Rat
Myod1 - myogenic differentiation 1
Basic Information
Sequence Homology
Transcripts & Proteins
Gene Expression
Interactions
Related Mouse Models
References Literature
Enables E-box binding activity. Involved in response to muscle stretch; skeletal muscle atrophy; and skeletal muscle tissue regeneration. Located in nucleus. Used to study congestive heart failure. Biomarker of hypertension and obesity. Orthologous to human MYOD1 (myogenic differentiation 1). [provided by Alliance of Genome Resources, Apr 2022]
Basic Information
NCBI
Transcripts
Exons
Length
MW (kDa)
Related Mouse Models
Reference
1
3
2711 bp
34.36
15
4
Myod1 Genetics information (+)
mRatBN7.2
Chr 1: 96884864 - 96887574
Adjacent gene of Myod1:6
Sequence Homology
Gene Length
Human
Chr 11
2566 bp
Mouse
Chr 7
2619 bp
Rat
Chr 1
2711 bp
Exon Count
Human
NM_002478.5
3
Mouse
NM_010866.2
3
Rat
NM_176079.2
3
Transcript Length
Human
NM_002478.5
1803 bp
Mouse
NM_010866.2
1854 bp
Rat
NM_176079.2
1948 bp
homology
Sequence Alignment
Human
NM_002478.5
84.8%
Mouse
NM_010866.2
94.8%
Rat
NM_176079.2
100%
Protein Length
Human
NP_002469.2
320 aa
Mouse
NP_034996.2
318 aa
Rat
NP_788268.2
318 aa
Protein homology
Sequence Alignment
Human
NP_002469.2
87.2%
Mouse
NP_034996.2
94.0%
Rat
NP_788268.2
100%
Transcripts & Proteins
There are 1 transcripts and 1 protein isoforms for Myod1 gene.
Table View
Tile View
#
Transcript
Length(nt)
Exon Count
CDS(bp)
Protein
Length(aa)
1
1948
3
957
NP_788268.2
318
* This data comes from NCBI.
Gene Expression
Tissue-specific RNA expression
Organ
Abundance
Alphabetical
Nervous system
Endocrine & Immune system
Respiratory & Circulatory system
Digestive system
Urinary & Reproductive system
Other systems
Interactions
Dir./Indir.
Active/Passive
Mechanism
Species
Tissue
Cells
Acting
Regulation
Detail
Mechanism
Target
Residues
Reference
Score
图标
Activity
Binding
Myod1
0
1
0.802
图标
Activity
Binding
Myod1
0
1
0.718
图标
Activity
Binding
Myod1
0
1
0.718
图标
Unknown
Acetylation
Myod1
0
1
0.65
图标
Unknown
Binding
Myod1
0
1
0.65
图标
Unknown
Acetylation
Myod1
0
1
0.623
图标
Quantity (Exp.)
Transcriptional Regulation
Myod1
0
1
0.566
图标
Quantity (Des.)
Unknown
Myod1
0
1
0.566
图标
Quantity (Des.)
Binding
Myod1
0
1
0.546
图标
Quantity (Des.)
Ubiquitination
Myod1
0
1
0.546
72 Results, 10 per Page
1
2
3
4
5
6
7
8
Related Mouse Models
Type
Name
MGI
Strain of Origin
Publications
Gene editing
--
C57BL/6JCya
--
Gene editing
--
C57BL/6JCya
--
Gene editing
--
C57BL/6NCya
--
Gene editing
129S4/SvJae
82
Gene editing
(129S6/SvEvTac x C57BL/6J)F1
54
Gene editing
129/Sv
4
Gene editing
C57BL/6 x 129
2
Gene editing
129/Sv
1
Gene editing
129/Sv
1
Gene editing
129/Sv
1
15 Results, 10 per Page
1
2
References Literature
Numbers
Title
PMID
Journal
Year
IF
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
Genome research
2004
7
Gene and alternative splicing annotation with AIR.
Genome research
2005
7
Muscle LIM protein promotes myogenesis by enhancing the activity of MyoD.
Molecular and cellular biology
1997
5.3
Isolation and structural analysis of the rat MyoD gene.
Gene
1992
3.5
4 Results, 10 per Page
1
Wechat
Sequence
Comparison
Al agent
Sources
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