LOCUS       NM_001007696            1470 bp    mRNA    linear   ROD 28-JAN-2025
DEFINITION  Rattus norvegicus mitochondrial ribosomal protein L9 (Mrpl9), mRNA.
ACCESSION   NM_001007696 XM_227455 XM_347210
VERSION     NM_001007696.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1470)
  AUTHORS   Brown,A., Rathore,S., Kimanius,D., Aibara,S., Bai,X.C., Rorbach,J.,
            Amunts,A. and Ramakrishnan,V.
  TITLE     Structures of the human mitochondrial ribosome in native states of
            assembly
  JOURNAL   Nat Struct Mol Biol 24 (10), 866-869 (2017)
   PUBMED   28892042
REFERENCE   2  (bases 1 to 1470)
  AUTHORS   Brown,A., Amunts,A., Bai,X.C., Sugimoto,Y., Edwards,P.C.,
            Murshudov,G., Scheres,S.H.W. and Ramakrishnan,V.
  TITLE     Structure of the large ribosomal subunit from human mitochondria
  JOURNAL   Science 346 (6210), 718-722 (2014)
   PUBMED   25278503
REFERENCE   3  (bases 1 to 1470)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   4  (bases 1 to 1470)
  AUTHORS   Mootha,V.K., Bunkenborg,J., Olsen,J.V., Hjerrild,M.,
            Wisniewski,J.R., Stahl,E., Bolouri,M.S., Ray,H.N., Sihag,S.,
            Kamal,M., Patterson,N., Lander,E.S. and Mann,M.
  TITLE     Integrated analysis of protein composition, tissue diversity, and
            gene regulation in mouse mitochondria
  JOURNAL   Cell 115 (5), 629-640 (2003)
   PUBMED   14651853
REFERENCE   5  (bases 1 to 1470)
  AUTHORS   Suzuki,T., Terasaki,M., Takemoto-Hori,C., Hanada,T., Ueda,T.,
            Wada,A. and Watanabe,K.
  TITLE     Structural compensation for the deficit of rRNA with proteins in
            the mammalian mitochondrial ribosome. Systematic analysis of
            protein components of the large ribosomal subunit from mammalian
            mitochondria
  JOURNAL   J Biol Chem 276 (24), 21724-21736 (2001)
   PUBMED   11279069
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC082085.1.
            
            On or before Nov 29, 2004 this sequence version replaced
            XM_227455.2, XM_347210.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC082085.1, CF109624.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on conservation,
                                                  expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1470
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q34"
     gene            1..1470
                     /gene="Mrpl9"
                     /note="mitochondrial ribosomal protein L9"
                     /db_xref="GeneID:310653"
                     /db_xref="RGD:1359171"
     exon            1..161
                     /gene="Mrpl9"
                     /inference="alignment:Splign:2.1.0"
     CDS             18..806
                     /gene="Mrpl9"
                     /note="39S ribosomal protein L9, mitochondrial; L9mt;
                     MRP-L9"
                     /codon_start=1
                     /product="large ribosomal subunit protein bL9m"
                     /protein_id="NP_001007697.1"
                     /db_xref="GeneID:310653"
                     /db_xref="RGD:1359171"
                     /translation="MAASMAPRCSSLLWAGAAWLRQRGIGELLQPRIERSTPGRDFSL
                     SHYQSTVIVERWWKVPLAGEGRKPRLHRRHRVYKLVEDTKHRPKDHLELILTQSVDEI
                     GVRGDLVSVKKSVGRNKLLPQGLAVYASPENRKLFEEEKLLRQEGKLEKIQTKAGEAT
                     VKFLRSCRLEVGMKNNVKWELNPEIVARHFFKNLGVVVAPHALRLPEDPITRWGEYWC
                     DVTVNGLDTVRVPMSVVLFRKPKTKRYKHWLAQQAAKITSPEAV"
     exon            162..318
                     /gene="Mrpl9"
                     /inference="alignment:Splign:2.1.0"
     exon            319..443
                     /gene="Mrpl9"
                     /inference="alignment:Splign:2.1.0"
     exon            444..494
                     /gene="Mrpl9"
                     /inference="alignment:Splign:2.1.0"
     exon            495..596
                     /gene="Mrpl9"
                     /inference="alignment:Splign:2.1.0"
     exon            597..680
                     /gene="Mrpl9"
                     /inference="alignment:Splign:2.1.0"
     exon            681..1421
                     /gene="Mrpl9"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctgtcctctt cgtggacatg gcggcctcta tggctccgcg atgtagttct ctgttgtggg
       61 caggcgctgc ttggctgcgt caaagaggca tcggggaatt actccagcca cgaattgaaa
      121 gaagcacccc gggccgtgac ttcagtctct ctcattatca gagcacggtc atcgtggagc
      181 gctggtggaa ggtgccgctc gccggggagg gccgtaagcc gcgcctgcac cggcgtcacc
      241 gcgtgtataa gttggtggag gacacgaaac accggcccaa agaccacctt gagctcatcc
      301 tcacgcagtc tgtggacgaa attggagtgc ggggtgatct ggtctcagtg aagaaatctg
      361 tgggtcgtaa caagctcctt cctcagggac tggctgtgta tgcatcccct gaaaatagga
      421 agctgtttga agaggagaaa ttgctgagac aagaaggaaa actggagaag atacagacaa
      481 aagcaggaga ggcgacagtg aagtttctga gaagctgtcg cctagaagtg ggcatgaaga
      541 acaatgtcaa atgggaactg aaccctgaaa tagtagcccg ccatttcttc aagaatcttg
      601 gtgttgtggt tgccccacat gctctgaggc tgccagagga ccctatcact cggtggggcg
      661 agtactggtg tgatgtgaca gtaaatggac tcgacactgt gagagttccc atgtctgtgg
      721 tgctctttcg gaagcccaag accaaaagat acaagcactg gttagcccag caagctgcca
      781 agatcaccag ccccgaggca gtctgaatgt cctccgtctc caaggccaca aagcagtcag
      841 gggagctttg gagcagcgtg ggccagcgct tggagctgtc ccatctctgc acacacgtgg
      901 atcacagaga acatgtggac tcagcacact gagctgcaca ctcgtgttgg gttctctgtg
      961 tctatcatca cctccttcag tggtcatcgg agccggctgt gctgccgcac cctgcagacg
     1021 gtagatttaa taagctaaac atcagtgacg aaacagtctt cctgctgctg agagtgcgtg
     1081 gacaggggca gggcccagcc actgctctga caattgcttt attctcagcc agcaagtgtc
     1141 ttgtgcagag ttaaagagct gcttaaagac ttgagtcgac tgtgggcagc gtgtccatag
     1201 tcttgagccg tggaggtctg atacaaagga ggacagtgta gctgttctct gtgtcccaca
     1261 gttgccatga gcagaccact ctgaatataa ccaattagtg ctcttagcac tttctctctc
     1321 tccatgtgag tgatacaggg gattccagta agatctgttt aaggcctaag gaggattgac
     1381 agagaaagtg aagctgggat taaagaagct taaaagaaaa aaaaaaaaaa aaaaaaaaaa
     1441 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//
