LOCUS       NM_001006973             811 bp    mRNA    linear   ROD 28-JAN-2025
DEFINITION  Rattus norvegicus mitochondrial ribosomal protein L11 (Mrpl11),
            mRNA.
ACCESSION   NM_001006973 XM_006230739 XM_215146
VERSION     NM_001006973.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 811)
  AUTHORS   Brown,A., Rathore,S., Kimanius,D., Aibara,S., Bai,X.C., Rorbach,J.,
            Amunts,A. and Ramakrishnan,V.
  TITLE     Structures of the human mitochondrial ribosome in native states of
            assembly
  JOURNAL   Nat Struct Mol Biol 24 (10), 866-869 (2017)
   PUBMED   28892042
REFERENCE   2  (bases 1 to 811)
  AUTHORS   Brown,A., Amunts,A., Bai,X.C., Sugimoto,Y., Edwards,P.C.,
            Murshudov,G., Scheres,S.H.W. and Ramakrishnan,V.
  TITLE     Structure of the large ribosomal subunit from human mitochondria
  JOURNAL   Science 346 (6210), 718-722 (2014)
   PUBMED   25278503
REFERENCE   3  (bases 1 to 811)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   4  (bases 1 to 811)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   5  (bases 1 to 811)
  AUTHORS   Suzuki,T., Terasaki,M., Takemoto-Hori,C., Hanada,T., Ueda,T.,
            Wada,A. and Watanabe,K.
  TITLE     Structural compensation for the deficit of rRNA with proteins in
            the mammalian mitochondrial ribosome. Systematic analysis of
            protein components of the large ribosomal subunit from mammalian
            mitochondria
  JOURNAL   J Biol Chem 276 (24), 21724-21736 (2001)
   PUBMED   11279069
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            FM108602.1, FM109142.1, FM054141.1 and JAXUCZ010000001.1.
            
            On or before Dec 3, 2020 this sequence version replaced
            XM_006230739.3, NM_001006973.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ225172.1, BC083740.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on single
                                                  protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-12                FM108602.1         6-17
            13-31               FM109142.1         2-20
            32-653              FM054141.1         1-622
            654-811             JAXUCZ010000001.1  211696510-211696667
FEATURES             Location/Qualifiers
     source          1..811
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q43"
     gene            1..811
                     /gene="Mrpl11"
                     /note="mitochondrial ribosomal protein L11"
                     /db_xref="GeneID:293666"
                     /db_xref="RGD:1359665"
     exon            1..199
                     /gene="Mrpl11"
                     /inference="alignment:Splign:2.1.0"
     CDS             77..655
                     /gene="Mrpl11"
                     /note="39S ribosomal protein L11, mitochondrial; L11mt;
                     MRP-L11"
                     /codon_start=1
                     /product="large ribosomal subunit protein uL11m"
                     /protein_id="NP_001006974.2"
                     /db_xref="GeneID:293666"
                     /db_xref="RGD:1359665"
                     /translation="MSKLSRVTRTLKKPEAGGVIRSIVRAGQAIPGPPLGPILGQRGV
                     SINQFCKEFNEKTKDIKEGIPLPTKIFIKPDRTFELKIGQPTISYFLKAAAGIEKGAR
                     QTGKEVAGLVSLKHVYEIARVKAKDEAFAMQDVPLSSIVRSIIGSARSLGIRVVKDLS
                     VDELAAFQKERAVFLAAQKEADLAAQAEAAKK"
     exon            200..295
                     /gene="Mrpl11"
                     /inference="alignment:Splign:2.1.0"
     exon            296..389
                     /gene="Mrpl11"
                     /inference="alignment:Splign:2.1.0"
     exon            390..549
                     /gene="Mrpl11"
                     /inference="alignment:Splign:2.1.0"
     exon            550..811
                     /gene="Mrpl11"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctctgaccca aaatgacagc gctcagatcg tagttcttga cttctccgag gcggactaag
       61 gttaaaatcc tatatcatgt cgaagctaag ccgggtcact cggaccctca agaagcccga
      121 ggccggcggc gtgatccggt ccatcgtgcg agcaggccaa gctatccctg ggcctccatt
      181 aggtcccatt ttgggtcagc gaggtgtctc tatcaaccag ttctgcaaag agttcaatga
      241 aaaaacaaag gacatcaaag aaggcattcc cttgcctaca aaaattttta taaagcccga
      301 cagaacattt gagctcaaga ttgggcagcc cactatttcc tactttttga aggcagctgc
      361 tgggattgag aagggggccc ggcaaacagg gaaagaggtg gcaggtctgg tgagtttgaa
      421 gcacgtatac gagattgccc gtgtcaaagc taaggatgag gcttttgcca tgcaagatgt
      481 acccctgtct tctattgtcc gttccatcat tggctctgcc cgctccctgg gcattcgtgt
      541 ggtgaaagac ctcagtgtag acgaactggc agcttttcag aaggaacggg ccgtgttttt
      601 ggctgctcag aaagaggcgg atttggcagc tcaggcagaa gctgccaaaa agtgacccca
      661 accttctaca ctctgaagtg agagactgag aagggggccc accgaggaag ctgagccaaa
      721 ggactccatg gcaacccgat ttatagtttc ctgacttctg tacatatgct gtgccacagg
      781 atcgagcctg aataaacgtc ctttgtcata a
//
