LOCUS       NM_001134549            6056 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus zinc finger, ZZ-type containing 3 (Zzz3), mRNA.
ACCESSION   NM_001134549 XM_001078082 XM_227809
VERSION     NM_001134549.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 6056)
  AUTHORS   Mi,W., Zhang,Y., Lyu,J., Wang,X., Tong,Q., Peng,D., Xue,Y.,
            Tencer,A.H., Wen,H., Li,W., Kutateladze,T.G. and Shi,X.
  TITLE     The ZZ-type zinc finger of ZZZ3 modulates the ATAC complex-mediated
            histone acetylation and gene activation
  JOURNAL   Nat Commun 9 (1), 3759 (2018)
   PUBMED   30217978
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6056)
  AUTHORS   Spedale,G., Timmers,H.T. and Pijnappel,W.W.
  TITLE     ATAC-king the complexity of SAGA during evolution
  JOURNAL   Genes Dev 26 (6), 527-541 (2012)
   PUBMED   22426530
  REMARK    Review article
REFERENCE   3  (bases 1 to 6056)
  AUTHORS   Orpinell,M., Fournier,M., Riss,A., Nagy,Z., Krebs,A.R., Frontini,M.
            and Tora,L.
  TITLE     The ATAC acetyl transferase complex controls mitotic progression by
            targeting non-histone substrates
  JOURNAL   EMBO J 29 (14), 2381-2394 (2010)
   PUBMED   20562830
REFERENCE   4  (bases 1 to 6056)
  AUTHORS   Krebs,A.R., Demmers,J., Karmodiya,K., Chang,N.C., Chang,A.C. and
            Tora,L.
  TITLE     ATAC and Mediator coactivators form a stable complex and regulate a
            set of non-coding RNA genes
  JOURNAL   EMBO Rep 11 (7), 541-547 (2010)
   PUBMED   20508642
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000002.1, FM103952.1 and FN806367.1.
            
            On Sep 15, 2012 this sequence version replaced NM_001134549.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on a combination of rat and
            orthologous mouse transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643292.11310.1,
                                           SRR26643297.10146.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1553              JAXUCZ010000002.1  244018893-244020445
            1554-1692           JAXUCZ010000002.1  244039237-244039375
            1693-1811           JAXUCZ010000002.1  244041253-244041371
            1812-2363           FM103952.1         1-552
            2364-2536           FN806367.1         527-699
            2537-2615           JAXUCZ010000002.1  244052346-244052424
            2616-6056           JAXUCZ010000002.1  244052678-244056118
FEATURES             Location/Qualifiers
     source          1..6056
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q45"
     gene            1..6056
                     /gene="Zzz3"
                     /gene_synonym="RGD1565468"
                     /note="zinc finger, ZZ-type containing 3"
                     /db_xref="GeneID:310958"
                     /db_xref="RGD:1565468"
     exon            1..1553
                     /gene="Zzz3"
                     /gene_synonym="RGD1565468"
                     /inference="alignment:Splign:2.1.0"
     CDS             31..2760
                     /gene="Zzz3"
                     /gene_synonym="RGD1565468"
                     /note="zinc finger, ZZ domain containing 3"
                     /codon_start=1
                     /product="ZZ-type zinc finger-containing protein 3"
                     /protein_id="NP_001128021.2"
                     /db_xref="GeneID:310958"
                     /db_xref="RGD:1565468"
                     /translation="MVGTCHSMAASRSTRVTRSTVGLNGLDESFCGRTLRNRSIAHPE
                     EISSHSQVRSRSPKKRPEPVPILKGNNNGRTSDVKQQSAREWVSPRKRRLSSSEKDDL
                     ERQALESCERRQAEPALPVLKNIKRCLRAEATNSSEEDSPVKPDKEPVEIRRTVVDHD
                     AEFQGAKRACRCLILDDCEKREVKKVNVSEEGPLNAAVLEEITGYLTVNGVDDSDSAV
                     INCDDCQPDRNTKQNSPGSCVLQEESVAGDGDSETQTSVFCGSGKEDSCIDHFVPCTK
                     SDVQVKLEDHKLVTACLPVERRSQLTAESASGPVSEVQSSLRDSEEEVDVVGDSSASK
                     EQCNENSSDPLDTGSECLPASGEPELSSMLDCVSAQMTSLSEPQEHRYTLRTSPRRAA
                     QTRGSPTKNTSPYRENGQFEENNLSPNETNTTASDNVSESPTNPVEISQDEKVLCCDS
                     ENYGSEGLSKPSSEARMNIGHLPSAKESASQHTAEEEDDDPDVYYFESDHVALKHNKD
                     YQRLLQTIAVLEAQRSQAVQDLESLGKHQREALKNPIGFVEKLQKKADIGLPYPQRVV
                     QLPEIVWDQYTSSLGNFEREFKHRKRHTRRVKLVFDKVGLPARPKSPLDPKKDGDSLS
                     YSMLPLSDGPEGSHHRPQMIRGRLCDDSKPETFNQLWTVEEQKKLEQLLLKYPPEEVE
                     SRRWQKIADELGNRTAKQVASRVQKYFIKLTKAGIPVPGRTPNLYIYSRKSSTSRRQH
                     PLNKHLFKPSTFMTSHEPPVYMDEDDERSCPHSHMSTAVEEASDEESIPVIYRSLPEY
                     KELLQFKKLKKQKLQQMQAESGFVQHVGFKCDNCGVEPIQGVRWHCQDCPPEMSLDFC
                     DSCSDCPHETDIHKEDHQLEPVYKSETFLDRDYCVSQGTSYSYLDPNYFPANR"
     exon            1554..1692
                     /gene="Zzz3"
                     /gene_synonym="RGD1565468"
                     /inference="alignment:Splign:2.1.0"
     exon            1693..1840
                     /gene="Zzz3"
                     /gene_synonym="RGD1565468"
                     /inference="alignment:Splign:2.1.0"
     exon            1841..1956
                     /gene="Zzz3"
                     /gene_synonym="RGD1565468"
                     /inference="alignment:Splign:2.1.0"
     exon            1957..2028
                     /gene="Zzz3"
                     /gene_synonym="RGD1565468"
                     /inference="alignment:Splign:2.1.0"
     exon            2029..2130
                     /gene="Zzz3"
                     /gene_synonym="RGD1565468"
                     /inference="alignment:Splign:2.1.0"
     exon            2131..2226
                     /gene="Zzz3"
                     /gene_synonym="RGD1565468"
                     /inference="alignment:Splign:2.1.0"
     exon            2227..2379
                     /gene="Zzz3"
                     /gene_synonym="RGD1565468"
                     /inference="alignment:Splign:2.1.0"
     exon            2380..2514
                     /gene="Zzz3"
                     /gene_synonym="RGD1565468"
                     /inference="alignment:Splign:2.1.0"
     exon            2515..2615
                     /gene="Zzz3"
                     /gene_synonym="RGD1565468"
                     /inference="alignment:Splign:2.1.0"
     exon            2616..6056
                     /gene="Zzz3"
                     /gene_synonym="RGD1565468"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtttcccaat gagtggatca tgatgaccgt atggtaggga cttgccatag tatggctgct
       61 tcccgatcta ctcgtgttac aagatcaaca gtggggttaa acggcttgga tgaatctttt
      121 tgtggtagaa ctttaaggaa tcgtagcatt gctcacccag aagaaatctc ttctcattct
      181 caagtgcgat caagatcacc aaagaagaga ccagagcctg tgccaattct gaaaggaaat
      241 aataacggaa gaacttctga tgtaaaacag cagagtgctc gagaatgggt aagccctagg
      301 aaaagaagac tttcttcttc ggaaaaggat gacctagaaa ggcaggccct agagagttgt
      361 gagagaaggc aggcagagcc agcactgcca gtcttaaaga acattaaacg ctgtcttaga
      421 gctgaagcca caaacagttc agaagaagat tcgcctgtaa aaccagacaa ggagccagta
      481 gaaatcaggc ggacagtagt ggaccatgat gcagagtttc aaggggctaa acgagcttgt
      541 cgatgtctta tattggatga ttgtgagaaa agggaagtta aaaaggtgaa tgtcagtgag
      601 gaagggccac ttaatgctgc agtattagaa gaaatcacag gctatctgac tgtcaatggt
      661 gttgacgaca gtgactcagc tgttataaac tgtgatgact gtcagcctga caggaacact
      721 aaacaaaata gccctggttc ctgtgtgctg caggaagaat cagtagctgg agatggggat
      781 tcggaaaccc agacttcagt gttctgtggt agtgggaagg aggacagttg tatagaccat
      841 ttcgtgcctt gcacaaagtc agatgtgcag gtcaagttgg aggaccacaa actagtaact
      901 gcctgcctgc ctgtggaacg tcggagtcag ctgactgctg agtcagcttc aggccctgtt
      961 tctgaagttc agtcatcctt aagagattct gaggaagaag tagatgtggt gggagatagc
     1021 agtgcctcca aagagcagtg taatgagaac agcagtgacc ctctggacac ggggtctgag
     1081 tgcttgccag cctctggaga gcctgaactg tcctctatgc tagactgtgt ttcagctcaa
     1141 atgacatctt tgtcagaacc tcaagaacat cgatacaccc tgagaacttc acctcgaagg
     1201 gcggcccaaa ccagaggtag tcccactaaa aacacatctc cttacagaga aaatggacaa
     1261 tttgaggaga ataatctcag tcccaatgag acaaacacaa ctgctagtga taatgtaagt
     1321 gagtctccca caaatcctgt tgagatctct caagatgaaa aggttctatg ttgtgactct
     1381 gaaaactatg gaagtgaagg actaagtaag ccatcttcag aggccagaat gaatatcgga
     1441 catttgccat ctgccaaaga gagtgccagt cagcacactg cggaagagga agatgatgac
     1501 cctgatgttt attactttga atcagatcat gtggcactga aacacaacaa agattatcag
     1561 agacttctgc agaccattgc tgtacttgag gctcagcgtt ctcaagcagt gcaagacctg
     1621 gaaagtttag gcaaacacca gagagaagca ctaaaaaatc ctattggatt tgtggagaaa
     1681 cttcagaaga aggctgatat agggcttcca tatccacaga gagttgtgca gttgccggag
     1741 atcgtgtggg accagtacac cagtagcctt ggcaactttg aaagggagtt taaacatcgc
     1801 aaaagacaca ctaggagagt taagttagtt tttgataaag tagggttgcc tgctagacca
     1861 aaaagtcctt tagatcctaa gaaggatgga gactcccttt catattccat gttgcctttg
     1921 agtgatggcc cagaaggttc gcatcatcgt cctcagatga tcagaggtcg tctgtgtgat
     1981 gacagcaaac ctgagacctt caaccagctg tggactgttg aagagcagaa aaaacttgaa
     2041 cagctactcc tgaagtaccc tcctgaagaa gtagaatctc ggcggtggca gaagattgct
     2101 gatgaactgg gcaaccggac agccaaacag gttgccagtc gtgtacagaa gtatttcata
     2161 aagctaacta aagccggcat accagttcca ggcagaacac ctaacttata tatatactcc
     2221 aggaagtcct caacgagcag gcgacagcac ccccttaata agcacctctt taaaccctcc
     2281 actttcatga cttcacatga gccaccagtg tacatggatg aagatgatga gcggtcctgt
     2341 ccccatagcc acatgagcac tgctgtcgag gaggcctcag atgaagaaag cattcctgtc
     2401 atttatagga gtttacctga atataaagaa ctattacagt ttaaaaagtt aaaaaagcag
     2461 aaacttcaac aaatgcaagc agaaagtggg tttgtgcaac atgtgggctt taagtgtgat
     2521 aactgcggtg tagaacctat ccaaggtgtc cggtggcact gccaggattg tcctccagaa
     2581 atgtctttgg atttctgtga ctcttgttca gactgcccac atgaaacgga tattcacaag
     2641 gaagatcacc agttagaacc tgtttataag tcggagacgt tcttagacag agactactgt
     2701 gtgtcccagg gcaccagtta tagttatctt gaccccaact acttccccgc caacagatga
     2761 catggaagag tgttgcacta gtcctcgtca acacacagca gtggcatcat tattaatggt
     2821 gtgcacagtt tgcacactca cagcatgaga gctccccgag tgttctcgtc aagtacagct
     2881 ctgcactgtg tggctgtagg tccgcagctg aaccttcctg gtgagccgag aggttccttg
     2941 gtgaaatctt caccacaact taaagccttg taggtggtga tgctaaatgg gtgaggtgga
     3001 aacaagagca cacattaatg ccagagtcaa ttccaaaggt tttaaagacc tcggtcataa
     3061 atatgataat gaaagacaaa gtatttatat taaatcagtt tagtagcttt cagttttgtg
     3121 aagatagttt tcagcgcaga aacagacgta gagacgaagt tttaaccagt gatggtgttt
     3181 gcttctagga cgtgtactct aaaagaactc actgtctggt ggtcactgat cgcctgtagt
     3241 agactggagc tgcttaacgg tttgatacct aacttaatca cgatgaactg tccgtaccaa
     3301 gagcagagcg agagatagct gtggctttgc ttctgtagcc agctcatggg gtgtgagtgt
     3361 catgaagttg tcacgcagat atatttttaa tgtcatgtta tatgagatga tcatgtgatg
     3421 tgtacagact atgttgagaa gtgccagtgg tagtaactgt aaagtctgac tcacaacatt
     3481 aaccctttaa agtacacagc cttctgcctc tgtgtggagt tgtcagtaca gctcgtcaga
     3541 gaaaactgcc taatataaaa atcatatata tggtgataat ttctccctct tttgtagtct
     3601 gcacaagatc cataaaagat tgtattttta ttactattta acgagtgatt aaatgtagtc
     3661 tgcacagtga gcaagagttc acaattcttt tatactgctg gattttgttg tgcatcattt
     3721 aaaacatttt gtatgtttct tacctgtgta tacagtatgt tcttgaataa tgttcatttg
     3781 tcaggagaac tgtgagaaat aaactatgtg gacatgtttg tttatattat agagagcttg
     3841 ttgtgaattc cttgggtcaa gtttcgattt tttttttttt ttaaacaagt gaaaaagtag
     3901 aatttgttat ttaaaagtct gcttttcggc tgtatttgcc ttctgttctt tacaaaggtg
     3961 aagctgtatt gtgctggtgt tctcatgtag cggctgagac actgcacagc gaggtgctga
     4021 ctaatgtcca ggtgtgggac ctgaatacaa gttaaagttt tattctcgta ggtttttctt
     4081 aataaaatta agttcccgtg tgttggatca agtggtttcc aaaaattatc aaagaaagaa
     4141 aagatagtat atattctatg gtagatggag tattaatact agttcttaac attgtttttt
     4201 cctgtttttt aagttcaggg aattctttaa aatactcagc aagttattaa aataccctga
     4261 attttttaat taagaaaaat acagaatttt aactatagaa aagagaaatt taaataatat
     4321 attgattatg tatcactggt catattgata cagtctattg tacccagaaa gaaaagctga
     4381 caggcttttg tctctgggct attagtgaag gagaggcagt ctgatgatgt ggatctctgc
     4441 tggatgctcc atgcgcatgc cgagggcttc ctcccctccc cctctgcagt gcgcagggca
     4501 gggcacctct ctgtatggaa gtcgtaccag gtagttgtgt agatccatcc agaagtccca
     4561 caggaagtac agtgtagaag ggggggagtg acaacagtgt aaggaccaca agagcagacg
     4621 aacctacctg agtatatttt aagactgagg tgataatgtg gggttttcct gtttgaacag
     4681 aaaatatttt tattttggat ttgtcagctc taagcacatt gtccccatgg cttgctgggg
     4741 acaattcctc gtgttttatt tgagagttga agaagtaggc aggctgttct ttgcaagtag
     4801 accgtctatc tctcttccaa ggaatattgg ctgcccacag ttggagttga gaagtggtgt
     4861 cttcaaggct cttagtatgt cagatttatt tcatggtgtg tgatgctcaa gttctttgct
     4921 actaactgga ggaacatttg ctaacaccgg aagcagttgc tgaggttagg gaacagtttc
     4981 ctttcatgtg atgcactgat agcacatgct gatttagcac tctctgtgca ctgtgcactg
     5041 tggcaactca ttgcattctc agcccaacaa agcaggttca aaagaagtta agtgactcac
     5101 ccagggtcat attggtaggg aagtgataag actttgtctt taaccacgat ggatcccttt
     5161 gtcattcttg gtttcccaag caagaacacc tccattgtca gatactctgc gtttttcatg
     5221 cctttttttc ctcatgcaat gctagaatac aagactgagc catgtccatg tttgtaatac
     5281 aagagagaga ggcccttgtg tggctggaca agtgccagta tatcccattg tgactgggag
     5341 cacacatgcc tctccatccc ctctcacccc gtcccgtggc tttccttgac tcctctcccc
     5401 cttcagttac attaactcac tgaacacagt tactgaggtg ttagggatgg agttgaaggg
     5461 ctggcagaaa atggcacatc actgtactag atgatcttct gtaagcagct gtgtgagatc
     5521 tactgtgtga gctttcgtac tctggagcgc ccggtttaaa cctatggtcg ggtgcactgg
     5581 aggaaaccag tggtttccag tgcatttccc tctttgaact tatagagtta agtgttcaga
     5641 ggaagggtta ctgctagtca tagatctcag aggacagcaa gcccgcttcc agggtttaag
     5701 catctgttaa gtggattgat ttctattctc tgacttttta atagattctc tataagtatt
     5761 tgttggttat gtgacccagt attcttcttt agagggtact ggagcccagt atatgaggtg
     5821 ctagtgactc ttgaaaagcc cgtcacaggg tacagggtcc cttgacctgc cctggaggac
     5881 agtctttgca tccagcttga caatgaaggg tgtgatcagt caatcagatc gtatatcttg
     5941 ggtgtatctc tgtcacattt gccatgacag tttgggtctt agtcaagtac ccttgattga
     6001 gttctaggaa ctagttactg acttgcagcc tttctaattg tatatgtggg aaaagt
//
