LOCUS       XM_002729395            4073 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ZXD family zinc finger C (Zxdc),
            transcript variant X1, mRNA.
ACCESSION   XM_002729395
VERSION     XM_002729395.6
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_002729395.7.
            
            On Jan 21, 2021 this sequence version replaced XM_002729395.5.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4073
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4073
                     /gene="Zxdc"
                     /note="ZXD family zinc finger C; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 18
                     ESTs, 1 long SRA read, 6 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 151 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:362399"
                     /db_xref="RGD:1561296"
     CDS             63..2699
                     /gene="Zxdc"
                     /codon_start=1
                     /product="zinc finger protein ZXDC isoform X1"
                     /protein_id="XP_002729441.4"
                     /db_xref="GeneID:362399"
                     /db_xref="RGD:1561296"
                     /translation="MPGRAGPLFSGGCGSDASAGPKMDLPAVLAAPATRGDQHGGGPS
                     RLRRGTGPSLGAGPGRRRLLLLRSPEDGGPGPRQEEAPGPSPPPPEDGGDSFVVLLEV
                     PRAADTHEQEETEPDSGASPTEQVPAAAPGAALAGTVTIHNQDLLVRFDRGVFTLAAA
                     PAPATQGLHPATTPGLEPSSAAASRRGPVAASAGSPAYRCPEPQCALSFAKKHQLKVH
                     LLTHGSLQGRRPFKCPLDGCGWAFTTSYKLKRHLQSHDKLRPFSCPVGGCGKKFTTVY
                     NLKAHMKGHEQESLFKCEVCAERFPTHAKLNSHQRSHFEPERPYKCDFPGCEKTFITV
                     SALFSHNRAHFREQELFSCSFPGCNKQYDKACRLKIHLRSHTGERPFICDSDSCGWTF
                     TSMSKLLRHKRKHDDDRRFTCPVEGCGKSFTRAEHLKGHSITHLGTKPFECPVEGCCA
                     RFSARSSLYIHSKKHLQDVGTPKSRCPVSSCNRLFTSKHSMKAHMVRQHSRRQDLVPQ
                     LEAPSSLTPSSELSSPGQSELTNIDLAALFSDTPANSSSSTAGSDEALNSGILTIDVT
                     SVSSSLGGNLPTNNNSLGPMDPLVLVAHSDMPPSLDSPLVLGTPATVLQPGSFSADDS
                     QAMSTGAVGCLVALPMRNLSQDSPALTPSNNLTALGTTPTSSDTTQETASVPDLLVPI
                     KVEQDLSPVPDVVQGQKESHGPSVLSSSAERLGAQKDSELSAGTGSLYLESGGSARTD
                     YRAIQLVKKKKQKGTGSDEGASDSAHRKIKGSTVSLPHVHSGQHSCFCGNPMAPSGSL
                     PVPAPAAATQCVQIPVLQDDPSGEGGLPLALSPQRSAFHPYFTVDLPVYVLQEVLPAP
                     GGFAGLEAAQVPGSTINLQDLQ"
ORIGIN      
        1 gctgtactct acgcttagct ttgacagaga ctcccggggg gcggacccta ggtgtcgcgc
       61 gcatgcctgg cagggctggg ccgctcttct ccggtggctg cggctcagac gcctcagctg
      121 ggcctaagat ggacctcccg gccgtgctcg ctgccccagc cacgcgcgga gaccaacatg
      181 gcggtggccc aagccgactt cgccgcggaa cggggccgtc cctcggtgct ggtcccgggc
      241 gccgccgcct gctgctgctg aggagcccgg aagatggcgg gcccgggccg cgtcaagagg
      301 aggccccggg gcccagcccg ccgcccccgg aagacggcgg cgactccttc gtggtactgc
      361 tggaagtgcc gcgcgcggcc gacacccatg aacaggagga gaccgagccc gactccggcg
      421 cgagccccac ggaacaggtc ccggccgccg cccccggcgc agctctggca ggcaccgtca
      481 ccatccacaa ccaggacctc ctggtgcgct tcgaccgcgg cgtcttcacg ctggccgccg
      541 cccccgcgcc agccacccag ggcctgcatc ccgcgaccac cccgggcctg gagccctcga
      601 gcgctgctgc gtcccgccgc gggccggtgg ccgccagcgc tggctctccg gcctaccgct
      661 gtcccgagcc gcagtgcgcg ctgagcttcg ccaagaagca ccagttgaag gtgcacctgc
      721 tgacgcacgg cagcctccag ggccggcgtc ccttcaagtg cccgctggat ggctgtggct
      781 gggccttcac cacctcctac aagctcaaac ggcacctgca gtcccatgac aagctgcgtc
      841 cttttagctg cccggtgggc ggctgcggca agaagttcac cacagtctac aacctcaagg
      901 cgcacatgaa gggccacgag caggagagtt tgttcaagtg cgaggtatgc gccgagcgct
      961 tccccacaca cgccaagctc aactcccacc agcgcagcca cttcgagccc gagcgaccct
     1021 acaagtgtga tttccctggc tgtgagaaga cattcatcac agtgagtgcc ctgttttccc
     1081 ataaccgagc ccacttcagg gaacaagagc tcttttcctg ctcctttcct ggatgcaata
     1141 aacaatatga caaagcctgc cgactgaaaa ttcacctgcg aagtcacaca ggtgagagac
     1201 catttatttg tgactcagac agttgtggct ggaccttcac cagtatgtcc aaacttctaa
     1261 gacacaaaag gaagcatgat gatgaccgga ggttcacttg ccctgttgaa ggctgtggca
     1321 agtcattcac tagagcagag catctgaagg gccacagtat cacccacctg ggaacaaagc
     1381 cattcgaatg ccctgtggaa ggatgctgtg ccaggttctc agctcgcagc agtctgtaca
     1441 ttcattctaa gaaacacctg caggatgtgg gtactccaaa aagccgctgc ccagtgtcca
     1501 gctgcaaccg actcttcacc tccaagcata gcatgaaggc tcacatggtg cggcagcata
     1561 gccggcgcca agatcttgta cctcagctgg aagctccaag ttctcttaca cccagcagtg
     1621 aactgagtag cccaggccaa agtgagctca ccaacataga tttagcagca cttttctctg
     1681 acacacctgc taatagcagc agttcaacag ctgggtcgga tgaagcactg aactctggga
     1741 tcctcaccat tgatgtcact tctgtgagct cttctctggg agggaatctc cctactaata
     1801 ataactcctt agggccaatg gaccccctcg ttctagtggc ccatagtgat atgcctccga
     1861 gtttggacag tcctcttgtt cttgggacac cagccacagt tctccaacca ggcagcttca
     1921 gtgcagatga ttcacaagcc atgagcacag gagcagtagg ctgtctggtg gctctgccta
     1981 tgaggaactt gagtcaagac tctccagctt tgacccccag caataacttg acagcacttg
     2041 gtaccacacc aacttcttca gacaccaccc aagaaactgc cagtgttcca gatctgctgg
     2101 ttccaataaa ggtggaacaa gacttgtctc ctgtcccaga tgtggtccag gggcaaaaag
     2161 aaagccatgg gccatctgtt ctatccagct ctgcagagag gctaggggct caaaaggact
     2221 cagagctcag tgctggcaca ggcagtctct acttggaaag tgggggctca gcaagaactg
     2281 attaccgagc cattcaacta gtcaagaaaa aaaagcagaa aggaactggg agcgatgaag
     2341 gagcctctga ctctgctcac aggaaaataa aaggaagcac agtcagcctt cctcatgtcc
     2401 actcaggaca acatagttgt ttttgtggaa atcccatggc acccagtgga agtctaccag
     2461 taccagcccc tgcagcggca acgcagtgtg tccagatccc tgttctgcag gatgacccct
     2521 caggtgaagg aggcttaccg ctggccctca gcccacagcg ctctgccttc cacccctact
     2581 tcaccgtgga tctgccagtc tacgtcctcc aggaggtgct tccagcaccc ggaggctttg
     2641 ctgggctaga ggctgcacag gtaccaggaa gcactatcaa cctgcaggac cttcagtgac
     2701 agcagcctga acaaatgagg actgccttcc aggcctgctt caagacctca gctggctggg
     2761 gagctggggc ttgggggtgg cagagagact catttgactt cctcagcact ccagcctggt
     2821 tctgtgagac tttagggtac atatattgaa agtacttaaa ctgcctccac aggttgccct
     2881 ctgagatagg cactgtgccc atgccgcgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg
     2941 tgtgtgtgtg tgtgtgcgcg cgcacgcgcg cgcctgtatg tgagtgtgca ttccagccct
     3001 tcccaggtcc ccttgggcct gaggtgggta gtacctttta cattaaaaga tccttgcagg
     3061 aagtgggtat agcatggctc cctactcagg aacatctctg tactgagtca gctgtagtgt
     3121 attagtattt tgtctgacac atcgagaaat ttggttcttt tctgagagct tgtatgacag
     3181 acagcttctc acctgtgaag atgatttggt gggtgtattg gtttcactgc actgtaagcc
     3241 atggtgaagc caaagtcagg ctgagctctg gcagggtacc caccagtggc ctgctagtag
     3301 aacctcttcc tagactgaca atgcagctca aagtttggga atgaagagtt caggctttta
     3361 aagtcatctt tctaaattct gtttctggga ttcatggtaa atagcaactt gtccatagtc
     3421 tctacagtga ggttctgaat gctatgttat atgtagggct ggaatgatag gcttgttttg
     3481 tggttaaggt tggagattgt gtggtttcac agagtgattc ggtcttccct gaggagacgg
     3541 ttagttgcct tgcacctatt tatttgttag tcaggactgg atacagggtc actgagaatg
     3601 catttttctt gggcttttgg agtgtgtgct tattcaaata ctattttggt cctgttctat
     3661 ctgagttgct ttgtttcttg gatttgggga gagccctgag gttgggcatt tgtcttctct
     3721 ggatggctct gtggtgccgt ctacttgggt gctgctccct acaaagagat tacaaatcct
     3781 acttgagaag actcctttcc acatgtctct cctgcatcat aggccaaagt ttaggggttg
     3841 aactaatcta cctactgtaa tcagcacccc catacacaat aggcagcctg gtatgactgt
     3901 caccctcctc aagagcccac cccacagaga aggttctttc tcccaaagcc tccagcgtgt
     3961 gtctacaagt gacaggatgg gctgtagtgc tctgagcact ggagcttccc gctgccaaag
     4021 gcccagtcct tagtgcaaat gaataaaaaa gtgtttgtat gttatgtgcc aaa
//
