LOCUS       NM_001008308            2016 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus zinc finger containing ubiquitin peptidase 1
            (Zup1), mRNA.
ACCESSION   NM_001008308 XM_215390
VERSION     NM_001008308.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2016)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2016)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   3  (bases 1 to 2016)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC085885.1.
            
            On Dec 16, 2004 this sequence version replaced XM_215390.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC085885.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2016
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20q11"
     gene            1..2016
                     /gene="Zup1"
                     /gene_synonym="DUB; RGD1307672; Zufsp"
                     /note="zinc finger containing ubiquitin peptidase 1"
                     /db_xref="GeneID:294390"
                     /db_xref="RGD:1307672"
     exon            1..74
                     /gene="Zup1"
                     /gene_synonym="DUB; RGD1307672; Zufsp"
                     /inference="alignment:Splign:2.1.0"
     exon            75..644
                     /gene="Zup1"
                     /gene_synonym="DUB; RGD1307672; Zufsp"
                     /inference="alignment:Splign:2.1.0"
     CDS             89..1822
                     /gene="Zup1"
                     /gene_synonym="DUB; RGD1307672; Zufsp"
                     /EC_number="3.4.19.12"
                     /note="zinc finger with UFM1-specific peptidase domain
                     protein; lys-63-specific deubiquitinase ZUFSP; ubiquitin
                     carboxyl-terminal hydrolase ZUFSP"
                     /codon_start=1
                     /product="zinc finger-containing ubiquitin peptidase 1"
                     /protein_id="NP_001008309.1"
                     /db_xref="GeneID:294390"
                     /db_xref="RGD:1307672"
                     /translation="MLSCDICGETVTSEPDRKAHLIVHMENEIICPFCKLSGINYNEM
                     CFHIETAHFEQTTPEKSFETLAAVQYENSDLGNTKLHSTVEVTSGIHSACASNFPKES
                     SESLSKDRTLKQEAFYTESVAESRKYQKSREKQSGLSEAQGSIYETTYSPPECPFCGR
                     IERYSQDMEIHVKTKHASLLESPLEDCHQPLYDCPMCGLVCTNYHILQEHVDLHLEES
                     SFQQGMDRVQCSSDRELAHQLQQEEERKRKSEESRQEREEFQKLQRQYGLDNSGGYKQ
                     QQLRHMELEVTRGRMHPSEFHSRKADMLESIAVGIDDGKTKTSGIIEALHRYYQNIAT
                     DVRCVWLSTVVDHFHSSFGDKGWGCGYRNFQMLLSSLLQNEVYSDCLKGMSVPCIPKI
                     QSMIEDAWNEGFDPQGASQLNNKLQGTKAWIGACEIYTLLTSLKVKCRIIDFHKSTGP
                     SGTHPRLFEWILNYYSSETEGAPKVVCTSKPPVYLQHQGHSRTVVGIEERKNRTLCLL
                     IFDPGCPSREMQKLLKQDMEAGSLRQLRKCVGNLKHKQYQIVAVEGILSPEERAARKQ
                     ASQVFTAEKIP"
     exon            645..755
                     /gene="Zup1"
                     /gene_synonym="DUB; RGD1307672; Zufsp"
                     /inference="alignment:Splign:2.1.0"
     exon            756..877
                     /gene="Zup1"
                     /gene_synonym="DUB; RGD1307672; Zufsp"
                     /inference="alignment:Splign:2.1.0"
     exon            878..1046
                     /gene="Zup1"
                     /gene_synonym="DUB; RGD1307672; Zufsp"
                     /inference="alignment:Splign:2.1.0"
     exon            1047..1235
                     /gene="Zup1"
                     /gene_synonym="DUB; RGD1307672; Zufsp"
                     /inference="alignment:Splign:2.1.0"
     exon            1236..1401
                     /gene="Zup1"
                     /gene_synonym="DUB; RGD1307672; Zufsp"
                     /inference="alignment:Splign:2.1.0"
     exon            1402..1553
                     /gene="Zup1"
                     /gene_synonym="DUB; RGD1307672; Zufsp"
                     /inference="alignment:Splign:2.1.0"
     exon            1554..1774
                     /gene="Zup1"
                     /gene_synonym="DUB; RGD1307672; Zufsp"
                     /inference="alignment:Splign:2.1.0"
     exon            1775..1992
                     /gene="Zup1"
                     /gene_synonym="DUB; RGD1307672; Zufsp"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtgaggaaga gctgttgtga ctgcggtact gcggagggct ctcggcggcc cgcgacaagg
       61 ctgagtcccg ggaggtccat gccccaccat gctttcctgt gacatctgtg gtgaaactgt
      121 aacctcagaa ccagatagga aggctcacct aattgttcac atggaaaatg aaattatctg
      181 tccgttttgc aagctgtcgg gtataaatta caatgaaatg tgttttcata ttgaaaccgc
      241 tcattttgaa cagactacgc cagaaaaaag cttcgagacg ctagccgcag tgcaatatga
      301 aaattcagac ctcggtaata ccaagctgca cagtacagtg gaagttacct caggcatcca
      361 ttcagcttgt gcatcgaact ttccaaagga gtcgtccgaa agcctttcta aagataggac
      421 tttaaaacaa gaagcttttt atacagagag cgtagctgaa tctagaaagt accagaaaag
      481 cagagaaaag cagtccggat tgtctgaggc ccaaggatca atttatgaaa caacatacag
      541 tccccccgaa tgtccgttct gtgggagaat tgagaggtac agtcaagata tggaaattca
      601 tgtgaaaaca aagcatgcca gccttctaga aagtccgtta gaagactgtc atcaaccact
      661 ctatgactgt cccatgtgtg ggcttgtctg tacaaattat cacattctcc aagaacatgt
      721 ggacttgcat ttagaagaaa gcagctttca acaaggcatg gacagagtcc agtgttctag
      781 tgacagagaa ttagctcacc agcttcagca agaagaagag agaaagagga aatctgaaga
      841 atcaagacaa gaaagggaag agtttcagaa attgcagcgg cagtacggct tagataattc
      901 tggaggatac aaacaacagc agctgcgaca catggagcta gaagtaacga ggggacgaat
      961 gcatccatct gagttccaca gcagaaaagc tgacatgttg gaatcaatcg ctgttggtat
     1021 tgatgatgga aaaacaaaaa cttctggaat tattgaagcc ctccacaggt attatcagaa
     1081 cattgccaca gatgtaaggt gtgtgtggct gtctacagtg gtggatcact ttcattcatc
     1141 ttttggggac aaaggttggg gttgcggtta tagaaatttc cagatgctgc tttcatcatt
     1201 actgcagaat gaagtgtaca gtgactgctt gaaaggtatg tcagttcctt gtattccaaa
     1261 aattcagtcc atgattgaag atgcgtggaa tgaaggtttt gatcctcagg gggcctctca
     1321 acttaataac aagttgcagg ggaccaaggc ctggattgga gcatgtgaga tctatacact
     1381 tctgacctca ctgaaagtca agtgccgcat tattgatttt cacaagtcaa ctggtccttc
     1441 aggcacacac cctcgcttat tcgagtggat actgaactat tattcctcag agacggaagg
     1501 ggcgccaaag gtcgtgtgta catccaaacc tcctgtctat ctccagcatc agggtcacag
     1561 tcgaacagtt gttgggattg aagagagaaa aaaccgaaca ttatgtttgc taatatttga
     1621 tcctggatgt ccttctcgag aaatgcagaa gctgttaaag caagacatgg aggctggtag
     1681 tctcaggcag ctccggaaat gtgtgggaaa tctgaagcat aagcagtacc agatagtagc
     1741 agtggagggt atcctgtccc cagaggagag agctgccagg aaacaagctt ctcaagtgtt
     1801 tacagcggag aagattcctt gacccagata ttttgtaatt atcctttttg tttccgatat
     1861 tgaactctga tacagttgaa gaatttgact tcactgaagt cggtgataaa ttatttaagt
     1921 tataaatgcc tgttgtactc cttagcattt cgttgtctgg taatcagttg aataaattcc
     1981 ttgtttacat taaaaaaaaa aaaaaaaaaa aaaaaa
//
