LOCUS       XM_006228322            3421 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus zinc finger SWIM-type containing 9
            (Zswim9), transcript variant X1, mRNA.
ACCESSION   XM_006228322
VERSION     XM_006228322.3
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086019) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_006228322.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3421
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..3421
                     /gene="Zswim9"
                     /note="zinc finger SWIM-type containing 9; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, 45 long SRA reads, 2 Proteins"
                     /db_xref="GeneID:308381"
                     /db_xref="RGD:1310257"
     CDS             50..2710
                     /gene="Zswim9"
                     /codon_start=1
                     /product="uncharacterized protein ZSWIM9 isoform X1"
                     /protein_id="XP_006228384.1"
                     /db_xref="GeneID:308381"
                     /db_xref="RGD:1310257"
                     /translation="MGQSKERRGAVPHSMLGSGPEPILPVDEPGPKMELTEPSPSPAV
                     QKEEQELLDRTFFSWAEFSRFFDKWCQQRLVVFSVKSSTRVARSPWANTPPLYRLIHV
                     LKYSYVLLVCKDVRMSNKSTAWPPQPSCPAFITVKLSPLRDRLVVTECQLTHSHPACP
                     REFAYHFRPGHLLANSCLPVRITNQISKQFVAPADVHRLLTHCKGPDHGVLDALQVLE
                     GLFRTDPEAKVKLVFVEDQAMVESVFLLTSRTRALLRRFPRILLVDRLPGLQGALDLM
                     AVLCVDSAGRARQAACCVARPGTPSLLRFMLVSLLQSAPDVKGRVRCLTAGPEVAGQL
                     RAVRQLLPCARVQICRAQGLETLFSKAQELGGASQEDPDLWPLLCRLADSKSYTAYSE
                     ALAELRSQAPTAFIRYFEHNWAPRHDMWVRFRAYEATRDLDACALVRGHRRRLLRRLN
                     PSHSVAQCLRDLVAMQWADATGEAASEGVNGDRVLLESEPRNRAQMEKEKVRGTEASN
                     WGRPDRESEKGRGLHLRDSQGVWLENQKVRGPEGTGAQLEKEHLREPEVRDWKGTQTE
                     NRRVKVLGPTDQRGNQVESEKAKSLEERPRREVQLQGERARALKPQDWKEPRFEIEKG
                     IDVRKWREVYVEKPLELVPENGDQRGPYLGADGQKGPDIAEERSGRFLVKRRRGLEDI
                     VVVHLEDARATGIVNGNGGGPQPVGFKNGGQQIEFGDPGGRLPGIGNGVPCTTPVQTV
                     LKGSPEWAVNRVKSLAAEDAVQGRDEEGPREPKRLCRPCRDEGVDCEPLAKFRAACGP
                     ELADLVAEELAFARQHGTRGFHWTGAGFALKDGISDFFLDGALTHCSCSIYAARHLPC
                     RHLFAARLLTGAALFHVDLLRDCWGRSQEP"
     polyA_site      3421
                     /gene="Zswim9"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 ccagaggctg ctgggagttg tagtctctag agcgtgaggc agtctggaaa tgggacagag
       61 taaggagagg aggggcgctg tcccgcatag catgctggga agcggcccgg agcctatcct
      121 ccccgtggat gagccgggtc ccaagatgga gctgacagag ccctcaccaa gcccagcagt
      181 gcagaaggag gaacaggaat tgttggatcg aaccttcttc tcttgggctg agttcagccg
      241 attcttcgac aagtggtgcc agcagcggct ggtagtcttc tccgtgaaga gctccacacg
      301 tgtggcacga agcccctggg ccaacacacc cccactctac aggcttatcc acgtgctcaa
      361 gtatagctac gtgctgctgg tgtgcaagga tgtacgcatg tccaacaagt ccacagcgtg
      421 gcctccccag cccagctgcc cggccttcat cactgtcaag ctgagccctt tgcgagatcg
      481 acttgtggtg actgagtgcc agctgaccca ctcacaccca gcctgcccac gcgagtttgc
      541 ctaccacttc cgcccaggcc acttgctagc caattcctgc ctgccagtcc gcatcaccaa
      601 ccagatctcc aagcagtttg tggcccctgc tgacgtgcac cgcctgctga cccattgcaa
      661 gggccccgac cacggggtcc tagatgccct gcaagtgctt gaggggctct tccgcacaga
      721 tccagaggcc aaggtgaagc tggtgttcgt ggaggaccaa gcaatggtag agagtgtgtt
      781 ccttctgaca tcgcgcacca gggcactgct gcgacgcttc ccgcgcatcc tattggtgga
      841 ccggctgcct gggttgcagg gcgcgctgga cctgatggca gtgctgtgtg tggacagcgc
      901 tggacgtgca cgccaggctg cctgttgcgt ggcgcgtcct ggcaccccta gcctgctgcg
      961 attcatgctg gtctccctgc tgcaaagtgc tcctgacgtc aaagggcgag tgcgctgcct
     1021 cacagctgga ccagaggtgg ctggacaact gcgtgcagtt cggcaactgt tgccatgtgc
     1081 tcgtgttcag atctgtcgtg ctcagggtct ggagacgctc ttcagtaagg cacaggagtt
     1141 aggtggtgcc agccaggagg atccggacct gtggccactc ctctgccgcc tagcagattc
     1201 aaaatcctat acagcttaca gtgaggcact ggctgagttg cgttcccagg caccaactgc
     1261 cttcatcaga tattttgagc acaactgggc accccgccat gacatgtggg tacgtttccg
     1321 tgcctacgaa gcaacccgag accttgatgc ctgtgctcta gttcgaggcc atcgcaggcg
     1381 actcttgcga cgcctcaacc cctcccatag tgtagctcag tgccttcgtg acctagtggc
     1441 catgcaatgg gctgatgcaa ctggagaggc agcttcagaa ggtgttaatg gtgacagagt
     1501 gttgttggaa agtgaaccca ggaatagggc acagatggag aaagagaagg tgaggggcac
     1561 agaggccagc aactggggaa ggcctgatcg agagagtgag aaagggaggg gattgcactt
     1621 gagagatagt caaggagtct ggttagagaa tcagaaggtg agagggcctg aagggacagg
     1681 agcccagctg gaaaaagagc atctgagaga gccagaagtc agggactgga agggaaccca
     1741 gacagagaat agaagggtta aggtactggg gcccacagat cagagaggca accaggttga
     1801 gtctgagaag gccaagagtc ttgaagaaag gccccggagg gaggtacaat tacagggtga
     1861 gagggcacgt gcactgaaac cgcaagactg gaaagagcct cgttttgaaa tagagaaagg
     1921 gatcgatgtt agaaagtgga gagaggtcta tgtggagaag cccttagagt tagtccctga
     1981 gaatggagat cagaggggac catacttggg agctgatggg cagaaagggc cagatattgc
     2041 agaggagaga agtggaaggt ttctagtcaa aaggagacgg ggcctggagg acattgttgt
     2101 tgttcattta gaggatgcga gagctacagg catagtgaat ggaaatggcg gaggacccca
     2161 acctgtaggt ttcaagaatg gaggacagca gattgagttt ggggatcctg gggggaggct
     2221 tccaggaata gggaatggtg taccatgcac tacccctgtg cagactgtgc tgaagggcag
     2281 tccagaatgg gcagtgaaca gggttaagtc cctggctgcg gaagatgcag ttcagggaag
     2341 agatgaagaa ggccccaggg aaccaaagag gctctgccgt ccctgtaggg atgagggagt
     2401 ggactgtgag ccactagcca agttccgagc agcgtgtggg ccagagttgg ctgatctagt
     2461 ggcagaggag ctggccttcg ccaggcagca cgggacccga ggtttccact ggactggagc
     2521 tggctttgcc cttaaggacg gcatctcaga cttcttcctg gatggggccc tgacacactg
     2581 tagctgctcc atctatgctg ccagacacct gccctgcaga cacctttttg cagcacgcct
     2641 cctcacaggg gcagccttgt tccacgtgga cctacttaga gattgctggg ggagatctca
     2701 ggaaccctga ccctgtgtac tcctgcctac tgccctccac atggagggga agaacatatt
     2761 ctttgatccc aaagataata gggctcatgc ccagtgggcc accccagccc ttctaatcac
     2821 ctcctgagac atctaaggac ctctctacat cctaggggat gctggctatt atttctgaga
     2881 tcctggagcc acacctatgg gtgtgctaat ggccagggca cattgaaagg acattaccct
     2941 ggagaagaaa tacatgagaa gagatcatga gagacagggt cagacaagac aagacaagaa
     3001 agagatagag ctgaggcaga gggaggcaca gtggaggcca tggaaaggag ctaaggtata
     3061 gggaccttat cactgacagg agtaaagacc gagagcccta gggactataa ggttgaaatg
     3121 gcaaaagcga ggaaggatga gcaaaactga agaggagaaa atataggaag gaggcaagag
     3181 atggctgggg aagtaagcac gcaaggagag agggtgataa ggggtaagga tagtttttaa
     3241 aaggagatga caaagcatag gaagacaaaa gatgatagga tgacctgggg agttggccat
     3301 ttctcagggt agggcagagg agatggctct ctggtggaac aacctacgta ctgcctcaga
     3361 ggaaagggaa ctaagtgaac agctgtgctt tgagattgaa ataaacagca ttattttgtt
     3421 c
//
