LOCUS       NM_001271275            6026 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus zinc finger, SWIM-type containing 8 (Zswim8),
            mRNA.
ACCESSION   NM_001271275 XM_001057186 XM_002728151
VERSION     NM_001271275.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 6026)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000015.1.
            
            On or before Sep 13, 2012 this sequence version replaced
            XM_002728151.2, XM_001057186.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMEA5760383, SAMEA5760386
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on computational evidence
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-505               JAXUCZ010000015.1  3638237-3638741     c
            506-659             JAXUCZ010000015.1  3635436-3635589     c
            660-754             JAXUCZ010000015.1  3635097-3635191     c
            755-927             JAXUCZ010000015.1  3634621-3634793     c
            928-1035            JAXUCZ010000015.1  3634354-3634461     c
            1036-1117           JAXUCZ010000015.1  3634147-3634228     c
            1118-1238           JAXUCZ010000015.1  3633910-3634030     c
            1239-1440           JAXUCZ010000015.1  3633352-3633553     c
            1441-1616           JAXUCZ010000015.1  3633050-3633225     c
            1617-2299           JAXUCZ010000015.1  3632006-3632688     c
            2300-2496           JAXUCZ010000015.1  3631707-3631903     c
            2497-2628           JAXUCZ010000015.1  3630633-3630764     c
            2629-2808           JAXUCZ010000015.1  3630316-3630495     c
            2809-2992           JAXUCZ010000015.1  3630002-3630185     c
            2993-3091           JAXUCZ010000015.1  3629692-3629790     c
            3092-3216           JAXUCZ010000015.1  3628771-3628895     c
            3217-3457           JAXUCZ010000015.1  3628096-3628336     c
            3458-3616           JAXUCZ010000015.1  3627847-3628005     c
            3617-3845           JAXUCZ010000015.1  3627540-3627768     c
            3846-4138           JAXUCZ010000015.1  3627086-3627378     c
            4139-4362           JAXUCZ010000015.1  3626721-3626944     c
            4363-4851           JAXUCZ010000015.1  3625009-3625497     c
            4852-5011           JAXUCZ010000015.1  3624655-3624814     c
            5012-5188           JAXUCZ010000015.1  3624363-3624539     c
            5189-5308           JAXUCZ010000015.1  3624110-3624229     c
            5309-5487           JAXUCZ010000015.1  3623708-3623886     c
            5488-6026           JAXUCZ010000015.1  3623040-3623578     c
FEATURES             Location/Qualifiers
     source          1..6026
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /map="15p16"
     gene            1..6026
                     /gene="Zswim8"
                     /gene_synonym="RGD1309414"
                     /note="zinc finger, SWIM-type containing 8"
                     /db_xref="GeneID:361004"
                     /db_xref="RGD:1309414"
     exon            1..505
                     /gene="Zswim8"
                     /gene_synonym="RGD1309414"
                     /inference="alignment:Splign:2.1.0"
     CDS             298..5691
                     /gene="Zswim8"
                     /gene_synonym="RGD1309414"
                     /note="zinc finger SWIM domain-containing protein 8-like"
                     /codon_start=1
                     /product="zinc finger SWIM domain-containing protein 8"
                     /protein_id="NP_001258204.1"
                     /db_xref="GeneID:361004"
                     /db_xref="RGD:1309414"
                     /translation="MELMFAEWEDGERFSFEDSDRFEEDSLCSFISEAESLCQNWRGW
                     RKQSAGPNSPTGGGGGGGSGGTRMRDGLVIPLVELSAKQVAFHIPFEVVEKVYPPVPE
                     QLQLRIAFWSFPENEEDIRLYSCLANGSADEFQRGDQLFRMRAVKDPLQIGFHLSATV
                     VPPQMVPPKGAYNVAVMFDRCRVTSCSCTCGAGAKWCTHVVALCLFRIHNASAVCLRA
                     PVSESLSRLQRDQLQKFAQYLISELPQQILPTAQRLLDELLSSQSTAINTVCGAPDPT
                     AGPSASDQSTWYLDESTLTDNIKKTLHKFCGPSPVVFSDVNSMYLSSTEPPAAAEWAC
                     LLRPLRGREPEGVWNLLSIVREMFKRRDSNAAPLLEILTDQCLTYEQITGWWYSVRTS
                     ASHSSASGHTGRSNGQSEVAAHACASMCDEMVTLWRLAVLDPALSPQRRRELCAQLRQ
                     WQLKVIENVKRGQHKKTLERLFPGFRPAVEACYFNWEEAYPLPGVTYSGTDRKLALCW
                     ARALPTRPGASRSGALEESRPRPLPTEPAVRPKEPGAKRKGLGEGVSSQRGPRRLSAE
                     GDKALHKMCPSGAKAKVLGGPGSGGKSSAGSGSKRRLSSEDSSLEPDLAEMSLDDSSL
                     ALGAEASTFGGFPESPPPCPPSAGSRGPSTFLPEPPDTYEEDADDSGSGLHKTKEAAP
                     AVGEEDDDYQAYYLSAQDGAGGEEEKAEGGTGEEHDLFAGLKPLEQESRMEVLFACAE
                     ALHAHGYSNEASRLTVELAQDLLANPPDLKVEPPPAKGKKNKVSTSRQTWVATNTLTK
                     AAFLLTVLSERPEHHNLAFRVGMFALELQRPPASTKALEVKLAYQESEVAALLKKIPR
                     GPSEMSTIRCRAEELREGTLCDYRPVLPLMLASFIFDVLCAPVVSLTGSRPPSRNWSN
                     EMPGDEELGFEAAVAALGMKTTVSEAEHPLLCEGTRREKGDLALALMITYKDDQAKLK
                     KILDKLLDRESQTHKPQTLSSFYSSSRPATANQRSPSKHGAPSAPGALQPLTSSSAGP
                     AQPGNVAGAGPAPTEGFTEKNVPESSPHSPCEGLPPEAALTPRPEGKVPSRLALGSRG
                     GYNGRGWGSPGRPKKKHTGMASIDSSAPETTSDSSPTLSRRPLRGGWAPASWGRGQDS
                     DSISSSSSDSLGSSSSSGSRRASASGGARAKTVEVGRCYKGRRPESHAPHVPNQPSEA
                     AAHFYFELAKTVLIKAGGNSSTSIFTHPSSSGGHQGPHRNLHLCAFEIGLYALGLHNF
                     VSPNWLSRTYSSHVSWITGQAMEIGSAALTILVECWDGHLTPPEVASLADRASRARDS
                     NMVRAAAELALSCLPHAHALNPNEIQRALVQCKEQDNLMLEKACMAVEEAAKGGGVYP
                     EVLFEVAHQWFWLYEETAGGSSTAREGAASCSGSGMRAAGEGGRGLPEGRGAPGTEPV
                     TVAAAAVTAAATVVPVISVGSSLYPGPGLGHGHSPGLHPYTALQPHLPCSPQYLTHPA
                     HPAHPMPHMPRPAVFPVPSSAYPQGVHPAFLGAQYPYSVTPPSLAATAVSFPVPSMAP
                     ITVHPYHTEPGLPLPTSVALSSVHPASTFPAIQGASLPALSTQPSPLVSGGFPPPEEE
                     THSQPVSPHSLHHLHAAYRVGMLALEMLGRRAHNDHPNNFSRSPPYTDDVKWLLGLAA
                     KLGVNYVHQFCVGAAKGVLSPFVLQEIVMETLQRLNPIHAHNHLRAPAFHQLVQRCQQ
                     AYMQYIHHRLIHLTPADYDDFVNAIRSARSAFCLTPMGVMQFNDILQNLKRSKQTKEL
                     WQRVSLEIATFSP"
     exon            506..659
                     /gene="Zswim8"
                     /gene_synonym="RGD1309414"
                     /inference="alignment:Splign:2.1.0"
     exon            660..754
                     /gene="Zswim8"
                     /gene_synonym="RGD1309414"
                     /inference="alignment:Splign:2.1.0"
     exon            755..927
                     /gene="Zswim8"
                     /gene_synonym="RGD1309414"
                     /inference="alignment:Splign:2.1.0"
     exon            928..1035
                     /gene="Zswim8"
                     /gene_synonym="RGD1309414"
                     /inference="alignment:Splign:2.1.0"
     exon            1036..1117
                     /gene="Zswim8"
                     /gene_synonym="RGD1309414"
                     /inference="alignment:Splign:2.1.0"
     exon            1118..1238
                     /gene="Zswim8"
                     /gene_synonym="RGD1309414"
                     /inference="alignment:Splign:2.1.0"
     exon            1239..1440
                     /gene="Zswim8"
                     /gene_synonym="RGD1309414"
                     /inference="alignment:Splign:2.1.0"
     exon            1441..1616
                     /gene="Zswim8"
                     /gene_synonym="RGD1309414"
                     /inference="alignment:Splign:2.1.0"
     exon            1617..2299
                     /gene="Zswim8"
                     /gene_synonym="RGD1309414"
                     /inference="alignment:Splign:2.1.0"
     exon            2300..2496
                     /gene="Zswim8"
                     /gene_synonym="RGD1309414"
                     /inference="alignment:Splign:2.1.0"
     exon            2497..2628
                     /gene="Zswim8"
                     /gene_synonym="RGD1309414"
                     /inference="alignment:Splign:2.1.0"
     exon            2629..2808
                     /gene="Zswim8"
                     /gene_synonym="RGD1309414"
                     /inference="alignment:Splign:2.1.0"
     exon            2809..2992
                     /gene="Zswim8"
                     /gene_synonym="RGD1309414"
                     /inference="alignment:Splign:2.1.0"
     exon            2993..3091
                     /gene="Zswim8"
                     /gene_synonym="RGD1309414"
                     /inference="alignment:Splign:2.1.0"
     exon            3092..3216
                     /gene="Zswim8"
                     /gene_synonym="RGD1309414"
                     /inference="alignment:Splign:2.1.0"
     exon            3217..3457
                     /gene="Zswim8"
                     /gene_synonym="RGD1309414"
                     /inference="alignment:Splign:2.1.0"
     exon            3458..3616
                     /gene="Zswim8"
                     /gene_synonym="RGD1309414"
                     /inference="alignment:Splign:2.1.0"
     exon            3617..3845
                     /gene="Zswim8"
                     /gene_synonym="RGD1309414"
                     /inference="alignment:Splign:2.1.0"
     exon            3846..4138
                     /gene="Zswim8"
                     /gene_synonym="RGD1309414"
                     /inference="alignment:Splign:2.1.0"
     exon            4139..4362
                     /gene="Zswim8"
                     /gene_synonym="RGD1309414"
                     /inference="alignment:Splign:2.1.0"
     exon            4363..4851
                     /gene="Zswim8"
                     /gene_synonym="RGD1309414"
                     /inference="alignment:Splign:2.1.0"
     exon            4852..5011
                     /gene="Zswim8"
                     /gene_synonym="RGD1309414"
                     /inference="alignment:Splign:2.1.0"
     exon            5012..5188
                     /gene="Zswim8"
                     /gene_synonym="RGD1309414"
                     /inference="alignment:Splign:2.1.0"
     exon            5189..5308
                     /gene="Zswim8"
                     /gene_synonym="RGD1309414"
                     /inference="alignment:Splign:2.1.0"
     exon            5309..5487
                     /gene="Zswim8"
                     /gene_synonym="RGD1309414"
                     /inference="alignment:Splign:2.1.0"
     exon            5488..6026
                     /gene="Zswim8"
                     /gene_synonym="RGD1309414"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agctgatggg ggaggcggcg ccgcagccgc ctagaggccc tggccgccca gcgcttcgtc
       61 ccggcctcga gtctcgcaga ctggccacaa tcccggctca cacctcgctg ttgggtgagg
      121 cccggcccag tgcccctctc aggcccgaga tcctcgcccg gcacggccgc cctgagcgcc
      181 ccggccaccc ccagccccgg ctcgcccctc aggccccggg cctcccctca gtccccggcc
      241 ggcggcccag gccccggatc cgcgggggga gacccggctc cggggggtgc gggccccatg
      301 gagctgatgt tcgcggagtg ggaggacggc gagcgcttct cgtttgagga ttccgaccgc
      361 tttgaggagg attcactctg ttcgttcatt tctgaggccg agagcctttg ccagaactgg
      421 cgaggatggc gcaaacagtc agcggggccc aattccccca ctggaggcgg tggcggaggt
      481 ggcagtggcg gtaccagaat gcgagatgga ttggtgatcc ctctggtgga gctgtcagcc
      541 aagcaggtgg cattccacat cccatttgag gtggtggaga aggtttaccc tccagtgcct
      601 gagcaactcc aactccgaat cgctttctgg agcttccctg agaacgaaga ggacatccgt
      661 ctgtattcat gcctagccaa tggcagtgcg gatgagttcc agcgagggga tcagctgttc
      721 cgaatgaggg ctgtgaaaga tcccctgcag atagggttcc atctgagcgc tacagtggta
      781 ccaccgcaga tggtccctcc caaaggggcc tacaatgtgg ctgtgatgtt tgaccgctgc
      841 cgggtcactt cctgtagctg tacctgtggg gctggggcca aatggtgcac ccatgtcgtg
      901 gcactctgtc tcttccgcat tcacaacgca tctgcagttt gcctgcgggc tcccgtctca
      961 gagtccctgt ctcggctaca aagggaccag cttcaaaaat ttgctcagta cctgatcagt
     1021 gagctccctc agcagattct ccccacggcc cagcgtcttc tagatgaact cctttcctcc
     1081 cagtcaacag ccatcaatac agtatgtgga gctccggacc ctacagcagg gccctcagct
     1141 tcagaccaga gcacttggta cttggatgag tcaacgctca ctgacaacat aaagaagacg
     1201 ctgcacaagt tctgcggccc ctcccctgtg gtcttcagtg atgtgaactc tatgtacctc
     1261 tcctccacgg agcctcctgc tgcagctgag tgggcatgtc tgctgcgccc tctgaggggt
     1321 cgagagcctg agggcgtctg gaacctgctt agcattgttc gagagatgtt caagcggagg
     1381 gacagcaatg ctgccccctt gctagaaata ctcacggacc agtgcctcac ctacgaacag
     1441 atcacgggct ggtggtacag cgtgcgtacc tcagcttcac acagcagtgc cagtggtcac
     1501 acaggccgta gcaacggaca gtcagaggta gcagcccatg catgtgcaag tatgtgtgat
     1561 gagatggtta ccctctggag gctggctgtg ctggaccctg ccctcagccc tcagcgccgc
     1621 cgggaactgt gtgcgcagct gcgccagtgg caactgaagg tgattgagaa tgtcaagcgg
     1681 ggacagcaca agaagaccct cgagaggctt ttccctggct tccggccagc tgtggaggcc
     1741 tgctacttta actgggaaga ggcttatccc cttcctggcg ttacctacag tggcaccgac
     1801 cgaaagctag ccctgtgctg ggcccgggcc ctgcccacta ggccaggagc ctctagatct
     1861 ggggccctgg aagagtcccg gccacgtcct cttcctactg agccagctgt gaggcccaag
     1921 gaacctgggg ccaagcgcaa aggattgggt gagggggtct cttcacagcg gggtccccgc
     1981 cgcctctcgg ctgaaggaga taaggctctg cataaaatgt gcccaagtgg ggccaaagcc
     2041 aaggtactgg gtgggcctgg cagtgggggc aagagctcag caggcagtgg gagcaaacga
     2101 cggctaagca gtgaagacag ctccctggaa ccagacttgg cagagatgag cctggatgac
     2161 agcagcctgg ccctgggtgc agaggccagc acctttgggg gattccctga gagccctcca
     2221 ccctgtcctc cctcagctgg ctccagaggg ccttccacct ttcttccgga gcccccagac
     2281 acttatgagg aagatgctga cgacagtggc agtgggctac acaaaaccaa agaggcagct
     2341 cctgcagttg gagaggagga tgatgactac caagcgtatt acctgagtgc ccaggatggg
     2401 gctggaggcg aggaggagaa ggctgagggc gggactgggg aagagcatga cctgtttgct
     2461 ggtttgaagc cactggaaca ggagagcagg atggaggtgt tatttgcctg cgctgaggcc
     2521 ctgcatgccc atggctacag caatgaggcc tcccgcctca ctgtggagct tgcccaggac
     2581 ctgctagcca acccacctga cctcaaggta gagccgcccc ctgccaaggg caagaagaac
     2641 aaggtatcca caagccgtca gacctgggtg gctaccaaca ctctgaccaa agcagccttc
     2701 ctgttgacag tgctaagtga gcgccctgag caccacaacc tggccttccg agtcggcatg
     2761 tttgcactgg agctacagcg gcctcctgct tcaaccaagg ccttggaggt aaagttggca
     2821 tatcaggaat ctgaggtggc cgctctgctc aagaagatcc ctcggggtcc cagtgagatg
     2881 agcaccattc ggtgccgggc agaagaactt cgagagggca cactgtgtga ctaccgccct
     2941 gtcttgcccc tcatgttggc cagcttcatc ttcgatgttc tctgtgctcc agtggtttct
     3001 ctcacgggtt cccggccccc aagtcgaaac tggagtaacg agatgcctgg agatgaggag
     3061 ctagggtttg aagcagcagt tgctgccttg ggcatgaaga caacagtgag tgaggcagaa
     3121 caccccctcc tatgtgaagg cacacggcgg gagaagggtg acctggcctt agcactcatg
     3181 atcacttaca aggacgacca ggccaagctc aagaagatcc tagacaaact cttggaccga
     3241 gaaagccaga cccataagcc acagaccctg agttctttct actcatctag ccgtccagcc
     3301 acagccaacc agagatctcc ttcaaagcat ggggccccat ctgcccccgg ggccctgcag
     3361 ccactgactt caagctctgc agggcctgct cagccgggga atgtggcagg ggctgggcca
     3421 gctcccactg agggcttcac agagaagaac gtgcccgaaa gctccccaca ttccccctgt
     3481 gaaggtctcc cacctgaggc agctttgacc ccacggccgg aggggaaggt tcctagccga
     3541 ctagcacttg gcagtcgtgg aggctataat ggccgaggtt ggggctcccc agggaggccc
     3601 aagaagaaac atacaggcat ggccagtatt gacagcagcg ccccagaaac cacatcggac
     3661 agctctccta ccttaagccg aaggccactt cgagggggct gggcccctgc ttcctggggc
     3721 cgaggacaag acagtgatag cattagcagc tcttcctcag actctctggg ctcctcatcc
     3781 tccagtggaa gccgccgggc tagtgccagt ggcggggccc gggcaaagac cgttgaagtt
     3841 ggcaggtgtt acaaaggccg ccgccctgag agtcatgccc cccacgtacc caatcagccg
     3901 tcagaggcag ctgcacactt ctattttgaa ttggcgaaga cagttctgat caaggcaggg
     3961 ggcaacagca gcacctccat tttcacacat ccatcttcct caggaggcca ccagggtcct
     4021 catcgcaacc tgcacctctg cgcctttgag attgggcttt atgccctagg cctgcataac
     4081 tttgtttctc ctaactggct ctctcgtacc tactcttccc atgtgtcctg gattacaggg
     4141 caggcgatgg agattggcag tgcagccttg actatactgg tggaatgctg ggatgggcac
     4201 ctgacacccc ctgaggtcgc atcgctggct gatagagcat cacgggcacg agactccaac
     4261 atggtgaggg cagcggcaga gctggccctc agctgcctgc ctcatgccca tgcactgaac
     4321 cccaatgaaa tccagcgagc cctggtgcag tgcaaggaac aggataatct gatgctggag
     4381 aaggcctgca tggcagtgga agaggccgcc aagggtgggg gcgtgtaccc cgaagtgctg
     4441 tttgaggtgg ctcaccagtg gttctggctt tatgaggaga cagcaggcgg ctcatccaca
     4501 gcccgtgaag gggctgcaag ctgtagtggc agtggcatga gggctgctgg ggagggtggg
     4561 cgaggactcc ctgagggtag gggcgcccca gggaccgaac ctgttacagt ggctgccgca
     4621 gcagtgacag cagccgccac agtggttcca gtcatctcag tggggtccag tttatatcca
     4681 ggtccaggac tggggcatgg tcattcccct ggcctgcacc cctacactgc tctccagccc
     4741 cacctcccct gcagccctca gtacctcacc cacccagctc accctgccca ccccatgcct
     4801 catatgcccc ggcctgccgt cttccctgtg cccagctctg catacccaca gggtgtgcat
     4861 cctgcattcc tgggggctca atacccttac tcagtgacgc ctccctcact tgctgccact
     4921 gctgtatctt tccctgtccc ttccatggct cccatcacag tccatcctta ccacacagag
     4981 ccagggctcc cactgcccac cagtgtggcc ttgagcagtg tccacccagc atccacattt
     5041 ccagccatcc agggtgcctc actgcctgct ctgagcacac agcccagccc tctggtaagc
     5101 ggaggtttcc caccacccga agaggagacg cacagtcagc ccgtcagtcc acacagcctg
     5161 caccacctgc atgctgccta ccgtgttggg atgctggcac tggagatgct aggtcgccgg
     5221 gcacataacg atcaccccaa caatttctcc cgctcccccc cttacactga tgatgtcaaa
     5281 tggttgctgg ggctggcagc aaagctggga gtgaactacg tgcaccagtt ctgtgtgggg
     5341 gcagccaagg gggtgctgag cccgtttgtg ctgcaggaga tcgtcatgga gacgctgcag
     5401 cggctgaacc ccattcatgc ccacaaccac cttcgagccc cggccttcca ccagctggtg
     5461 cagcgctgtc agcaggcgta catgcagtac atccaccacc gcttaattca cctgacccct
     5521 gccgactacg acgacttcgt gaatgcgatc cgcagcgccc gcagcgcctt ctgcctgacg
     5581 cccatgggcg tgatgcagtt caacgacatc ctgcagaacc tcaagcgcag caagcagacc
     5641 aaggagctgt ggcagcgggt ctccctggag atagccacct tctccccctg agcctggccg
     5701 ctgtggcagc gggtctccct ggagatggcc accttcttct ccccctgagc ctggccgctg
     5761 tagggcccta tctagggaca caggcctgtg accatggggg gccctcacac agagggccac
     5821 gtgactcctg gctggacaga tcatccccac tcaattccct tgtagctcag actggcagct
     5881 gctcttgggc tgtagcttgg ggccaagatg tctcagacct tagaagcctt gggctggggg
     5941 agacagcctt gtctgggaga gggcgttggg tggcctctgg tatttatttg gcatttataa
     6001 atatataaac tcctttttta ctctgt
//
