LOCUS       XM_039103499            5572 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zinc finger, SWIM-type containing 6
            (Zswim6), mRNA.
ACCESSION   XM_039103499
VERSION     XM_039103499.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039103499.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-209               JACYVU010000065.1  31883939-31884147   c
            210-211             "NN"               1-2
            212-777             JACYVU010000065.1  31883373-31883938   c
            778-1134            JACYVU010000065.1  31780857-31781213   c
            1135-1283           JACYVU010000065.1  31767217-31767365   c
            1284-1434           JACYVU010000065.1  31759397-31759547   c
            1435-1614           JACYVU010000065.1  31740287-31740466   c
            1615-1791           JACYVU010000065.1  31736034-31736210   c
            1792-1938           JACYVU010000065.1  31735610-31735756   c
            1939-2085           JACYVU010000065.1  31732445-31732591   c
            2086-2346           JACYVU010000065.1  31730581-31730841   c
            2347-2482           JACYVU010000065.1  31726010-31726145   c
            2483-2640           JACYVU010000065.1  31722797-31722954   c
            2641-2804           JACYVU010000065.1  31721986-31722149   c
            2805-2886           JACYVU010000065.1  31720329-31720410   c
            2887-5572           JACYVU010000065.1  31716401-31719086   c
FEATURES             Location/Qualifiers
     source          1..5572
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5572
                     /gene="Zswim6"
                     /note="zinc finger, SWIM-type containing 6; The sequence
                     of the model RefSeq transcript was modified relative to
                     its source genomic sequence to represent the inferred CDS:
                     inserted 2 bases in 1 codon; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     mRNAs, 27 ESTs, 2 long SRA reads, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 115 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:310062"
                     /db_xref="RGD:1306624"
     CDS             30..3749
                     /gene="Zswim6"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: zinc finger SWIM
                     domain-containing protein 6"
                     /protein_id="XP_038959427.1"
                     /db_xref="GeneID:310062"
                     /db_xref="RGD:1306624"
                     /translation="MAAWRRHGVCVSRFLVPFIGSRHFRCRVRSGAVMAERGQQPPPA
                     KRLCCRPGGGGGGGGGXGGSSGGGAGGGYSSACRPGPRAGGAAAAACGGGAALGLLPP
                     GKTQSPESLLDIAARRVAEKWPFQRVEERFERIPEPVQRRIVYWSFPRSEREICMYSS
                     FNTGGGSAGGPGDDSGGGGGTGGGAGGGGGGSSSSPAATSAAAAAVAAGTGTPSVGAS
                     SAADGGDETRLPFRRGIALLESGCVDNVLQVGFHLSGTVTEPAIQSEPETVCNVAISF
                     DRCKITSVTCSCGNKDIFYCAHVVALSLYRIRKPDQVKLHLPISETLFQMNRDQLQKF
                     VQYLITVHHTEVLPTAQKLADEILSQNSEINQVHGAPDPTAGASIDDENCWHLDEEQV
                     QEQVKLFLSQGGYHGSGKQLNLLFAKVREMLKMRDSNGARMLTLITEQFMADPRLSLW
                     RQQGTAMTDKYRQLWDELGALWMCIVLNPHCKLEQKASWLKQLRKWNSVDVCPWEDGN
                     HGGELPNLTNALPQGANANPDSSNRPHRTVFTRAIEACDLHWQDSHLQHIISSDLYTN
                     YCYHDDTENSLFDSRGWPLWHEHVPTACARVDALRSHGYPREALRLAIAIVNTLRRQQ
                     QKQLEMFRTQKKELPHKSVTSVTNLEGWVGHPLDPVGTLFSSLMEACHTDDEAFSGFS
                     DCTDNVGQCKSLEYHHLPAHKFLEEGESYVTLAVEVALIGLGQQRIMPDGLYTQEKVC
                     RNEEQLISKLQEIELDDTLVKIFRKQAVFLLEAGPYSGLGEIIHRESVPMHTFAKYLF
                     TSLLPHDAELAYKIALRAMRLLVLESTAPTGDLSRPHHIASVVPNRYPRWFTLSHIES
                     QQCELASTMLTAAKGDVRRLETVLESIQKNIHSSSHIFKLAQDAFKIATLMDSLPDIT
                     LLKVSLELGLQVMRMTLSTLNWRRREMVRWLVTCATEVGVYALDSIMQSWFTLFTPTE
                     ATSIVATTVMSNSTIVRLHLDCHQQEKLASSARTLALQCAMKDPQNCALSALTLCEKD
                     HIAFETAYQIVLDAATTGMSYTQLFTIARYMEHRGYPMRAYKLATLAMTHLNLSYNQD
                     THPAINDVLWACALSHSLGKNELAAIIPLVVKSVKCATVLSDILRRCTLTTPGMVGLH
                     GRRNSGKLMSLDKAPLRQLLDATIGAYINTTHSRLTHISPRHYSEFIEFLSKARETFL
                     MAHDGHIQFTQFIDNLKQIYKGKKKLMMLVRERFG"
ORIGIN      
        1 gtgcccctac aaggagcggc gggccctaga tggcagcgtg gcgtcgccac ggcgtgtgcg
       61 tgtcgcgctt ccttgtgccg tttatagggt cccggcactt ccgctgtcgg gttagaagcg
      121 gcgcggtcat ggcggagcgc ggacagcagc ctcctcccgc gaaacggctc tgctgccggc
      181 cgggcggcgg cggcggcggc ggcggcggcn nggggggtag cagcggcggc ggcgcgggtg
      241 gcggctatag ctctgcctgt cggcccggcc cgcgggcggg cggtgcggcg gcggcggcgt
      301 gcgggggcgg cgcggcgctg ggactgctgc cgccgggcaa gacccagagc cccgagtctc
      361 tgctggacat cgcagcgcgc agggtggcgg agaagtggcc gttccagcgc gtggaggagc
      421 gcttcgagcg catcccggag ccggtgcagc gccgcatcgt ctactggtcc tttccccgca
      481 gtgagcggga gatctgcatg tactcgtcct tcaacaccgg tggcggctcc gcgggcggcc
      541 ccggcgacga cagcggcggc ggcggcggca cgggcggcgg cgcgggcggc ggcggcggcg
      601 gctcctcatc ctcgccggcc gccacctcag ccgccgccgc cgccgtcgcc gcgggcaccg
      661 ggaccccgtc ggtgggggcg tccagcgctg cggacggtgg cgacgagacg cggctgccct
      721 tccgccgggg tatcgcgctg ctggagagtg gctgcgtaga caacgtcctg caagtcggtt
      781 tccacttgag tggcacagtg acagaacctg caatacaatc ggagccagaa accgtttgca
      841 acgtggccat cagctttgat cgttgcaaga ttacctcagt gacctgcagc tgtggaaaca
      901 aggacatatt ttattgtgcc catgttgtgg cactgtcttt atatcgcatc cgcaagccag
      961 atcaggtcaa actgcatctt cccatttcag agactctctt tcagatgaac agagaccagc
     1021 ttcagaagtt tgttcagtat ttgatcacag tgcaccacac agaagtcttg ccaactgctc
     1081 agaagcttgc agatgaaatt ctctctcaga attcggaaat caaccaagtt catggtgctc
     1141 ctgaccctac ggcgggtgct agtattgacg acgagaactg ctggcacttg gacgaagagc
     1201 aggtgcaaga acaggttaaa ctgttcctct cccagggagg gtaccatgga tcagggaagc
     1261 agcttaactt gctctttgca aaggtgcggg agatgttgaa gatgagggac tccaatgggg
     1321 cccgcatgct gaccttgatc acagagcagt tcatggctga ccctcgcctg tcactttgga
     1381 ggcagcaagg cactgcaatg actgacaaat ataggcagct ctgggatgag cttggtgctc
     1441 tgtggatgtg tatcgtgtta aacccccact gtaagttgga gcaaaaggcc agttggctga
     1501 aacagctgag aaaatggaac agtgttgatg tctgtccgtg ggaagatgga aatcatggtg
     1561 gtgaattgcc caacctaacc aatgctctgc ctcagggtgc aaatgccaac ccagattcat
     1621 cgaacaggcc tcatcggaca gtgttcacca gagccatcga ggcctgtgac ctccactggc
     1681 aggacagcca cttgcagcac attatcagca gtgacctgta caccaactac tgttaccatg
     1741 acgacactga aaactccctc tttgactccc gggggtggcc cctctggcat gaacacgttc
     1801 ctacagcctg tgcaagagtg gatgcattac gttctcacgg gtaccccaga gaagccctga
     1861 gactagcgat agctattgtg aacacattac gacgacagca gcagaagcag ttggaaatgt
     1921 tccggactca aaaaaaagag ctgccccata aaagcgtaac ctcagtaacc aatctggaag
     1981 gctgggttgg acaccccctt gaccccgtgg gcactctctt cagtagcctc atggaagctt
     2041 gccacactga cgatgaggcc ttctctgggt tctcagattg tacagacaac gtgggacagt
     2101 gcaaatccct ggagtaccac catctgcctg cacacaagtt cttagaagaa ggggagtcct
     2161 atgtaacact ggctgtagag gtagccctga taggcctggg gcagcagcga atcatgcctg
     2221 acgggctgta cacacaagag aaggtttgcc ggaatgagga gcagcttatt tctaagcttc
     2281 aggaaatcga attggatgac acactggtga agatttttcg caagcaagca gtcttcctat
     2341 tggaagctgg cccatacagt ggcttaggtg aaataatcca tcgggagagt gttccaatgc
     2401 acacatttgc caagtatctc ttcacctctc tcctacctca tgatgctgaa ttagcataca
     2461 aaattgcact gagagcaatg cggttactag tattggaatc tactgctccg acaggagacc
     2521 tctcccgccc ccaccacatt gcgtcagttg tccccaaccg ataccctcgt tggttcactt
     2581 taagccacat tgaatcccag cagtgtgagc tggcatccac catgctaact gcagccaaag
     2641 gcgatgttcg gaggctggag acagtattag aatccatcca gaaaaacatc cactcctcat
     2701 cacacatctt caagcttgcc caagatgcat ttaaaatagc aactctcatg gacagtctgc
     2761 cagacatcac tcttttgaaa gtgtctctgg agctgggcct gcaggttatg cgaatgacac
     2821 tgtcaaccct caattggcga cggcgagaaa tggtgcggtg gctggtgaca tgtgctactg
     2881 aagtaggcgt ttatgccctg gacagcatca tgcagagctg gtttacactg ttcactccca
     2941 ctgaggccac aagtattgtt gcaactactg tgatgtccaa cagcaccata gtccgcctcc
     3001 acctggactg ccaccagcag gagaagctgg ccagcagtgc ccggacgctg gcattgcagt
     3061 gcgccatgaa ggacccacag aactgcgccc tctctgcact gaccctctgt gaaaaggatc
     3121 acatagcttt tgagacggcg taccaaattg tccttgatgc tgctaccacc ggcatgagct
     3181 acacacagct ctttacaata gcacggtaca tggagcaccg tgggtacccc atgagggcct
     3241 acaagctggc gacgctggcc atgacccatc tcaacctgag ctataatcag gacacacacc
     3301 ctgccattaa cgacgtgctg tgggcctgtg cgcttagtca ctccctgggt aagaatgagc
     3361 ttgcagctat aatacctctg gtggtcaaga gtgtcaagtg cgcaacggta ctgtcagaca
     3421 ttttgcgcag gtgcactctg accactcctg gcatggtggg acttcatgga aggaggaact
     3481 ctggcaagct catgtcactg gacaaagccc ccttgcggca gctcttggat gccacgatcg
     3541 gggcctatat caacacgacg cactcccgac tcacacacat cagtcctcgg cactacagcg
     3601 agtttataga gttcctcagc aaggcccgag agaccttcct gatggcacat gatggacaca
     3661 ttcagtttac acagtttatt gacaacctga aacaaatcta caaaggcaaa aagaaactga
     3721 tgatgttggt tcgggagagg tttggttgat agaacctgta tgaatgggga gggggtgggg
     3781 gcgggaggga tggtttgttt ttacttgagc ctgcctttgt acccttttta acttaaagaa
     3841 cagagccaca ccggtattat atgtgtatag ttatattgcg tttgcagact aaattgtcat
     3901 gttgtgaaag tttgtgtgtt tttaaatttt tcccttttcc tttctttggt ttttaattct
     3961 ttttttttta ttattattat tggtttgtgt gagagaggtt gagaaggttt ggtttacact
     4021 gagtatatgt tgtcaagtgg ccaaagtcca catagctctc ctgttttctg tatacgttca
     4081 cagcctcaaa aaaaaaaaaa ataattgaaa tggctttaaa aaccgaacag aacacctcca
     4141 tcctgcgata agtacctcga atggattcag ctttacccct ctgtgactca tcctcacatt
     4201 ctcagcatat ttaacagacc aacaaaacca agtactagta gtgaggggct gacccacgtg
     4261 gctttgcagt gctcttcgtc cagaagcatg gcacacgatg cttgtgcatg tggaaactta
     4321 gcgactgtca acatacattc tcagggattt atccaaaaaa attaaaaaaa aaaaagaatg
     4381 agagcattta ttgtactgta tatatattat agtatatgtc tgaatattga aaatataaca
     4441 ttaactaatt tataaaaaat attctatgta atgcaaaaat acttgaagct gcagtagctt
     4501 ggttttaaac aaaaacaaaa aaatggagag aaaaacctat cagaaggact agaagtgcgc
     4561 cttgcttcgg ggtgggctca gtcagtgaac ttcatgctgg gcgttaacgc agagccacct
     4621 accgcctgcg tagttggact gagatctatc gggaagattc tatacgtata tatatctata
     4681 cagcttctgt atacgtatgt atatgtatac acacagacac caacaaccac tacaccacac
     4741 atgcttgtaa caggcactgg aataaagagg ggcaacacac agccggagca gccagcctta
     4801 gcactaagaa catgcagtac gccagaactg gggttcgtgc ctcccagcct aggaaactca
     4861 aatatccttt tgacacaaaa cgcaaaatgt tttccagaac aattgacatg atacattacg
     4921 cctttgcagt gagctaataa gctaacgttt gtgcacagat aacattatat atattatata
     4981 tctattctgc ataggtattt tgactttgtg caggacagaa agttgtgtag gtatgactgt
     5041 tctacttttc agttctctct ctcttttttt taatatattt tattttctct agaattactc
     5101 aaaacaaaag cagccttcta tcttgccttg tcttaatgct ttaaaataac caaactggag
     5161 atctaactac caaactgttc attatattat taaaatacca accttggtta cagtgtagtg
     5221 tctttacttt agctgatggt tctgtaacct tgtgcttttt aaagcaactt tatgttttgg
     5281 tgcaaaagtt gtcccgtgtc tcttgttccc ttcattagaa aacatgctag aggtatgttt
     5341 gtaggtattt ttgtttagaa gaactatttc atgcgctcca ttttatttat tataataggt
     5401 aaaaagaaaa aaaaaggtcg tacttcttca ctcatgtaaa catgctcatg aagttgaaag
     5461 taagatttga tacactgata tcaatttatt tatgtaacta aatcactgtt ttataaactt
     5521 gttaatgatc aacaattttt gttttgatta aaattagttt tttgaaagtt ga
//
