LOCUS       NM_001401321            5555 bp    mRNA    linear   ROD 09-APR-2024
DEFINITION  Rattus norvegicus zinc finger, SWIM-type containing 5 (Zswim5),
            mRNA.
ACCESSION   NM_001401321 XM_039109995
VERSION     NM_001401321.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5555)
  AUTHORS   Bohm,D., Keller,K., Pieter,J., Boehm,N., Wolters,D., Siggelkow,W.,
            Lebrecht,A., Schmidt,M., Kolbl,H., Pfeiffer,N. and Grus,F.H.
  TITLE     Comparison of tear protein levels in breast cancer patients and
            healthy controls using a de novo proteomic approach
  JOURNAL   Oncol Rep 28 (2), 429-438 (2012)
   PUBMED   22664934
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Feb 8, 2022 this sequence version replaced XM_039109995.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643298.28527.1,
                                           SRR26643293.29469.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-642               JAXUCZ010000005.1  135583356-135583997
            643-999             JAXUCZ010000005.1  135664852-135665208
            1000-1148           JAXUCZ010000005.1  135670814-135670962
            1149-1299           JAXUCZ010000005.1  135673833-135673983
            1300-1479           JAXUCZ010000005.1  135675316-135675495
            1480-1656           JAXUCZ010000005.1  135683351-135683527
            1657-1803           JAXUCZ010000005.1  135686180-135686326
            1804-1941           JAXUCZ010000005.1  135686808-135686945
            1942-2202           JAXUCZ010000005.1  135690410-135690670
            2203-2338           JAXUCZ010000005.1  135690892-135691027
            2339-2496           JAXUCZ010000005.1  135691807-135691964
            2497-2660           JAXUCZ010000005.1  135695015-135695178
            2661-2742           JAXUCZ010000005.1  135696795-135696876
            2743-5555           JAXUCZ010000005.1  135697578-135700390
FEATURES             Location/Qualifiers
     source          1..5555
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..5555
                     /gene="Zswim5"
                     /note="zinc finger, SWIM-type containing 5"
                     /db_xref="GeneID:313524"
                     /db_xref="RGD:1310741"
     exon            1..642
                     /gene="Zswim5"
                     /inference="alignment:Splign:2.1.0"
     CDS             24..3605
                     /gene="Zswim5"
                     /note="zinc finger, SWIM domain containing 5"
                     /codon_start=1
                     /product="zinc finger SWIM domain-containing protein 5"
                     /protein_id="NP_001388250.1"
                     /db_xref="GeneID:313524"
                     /db_xref="RGD:1310741"
                     /translation="MAEGGEREELLSPPPISPAKRLCSWPSPQAHHPRGTPGAAGGGA
                     GGGGGSCLAPGARPHLQPESLLDCAAKTVAEKWAYERVEERFERIPEPVQRRIVYWSF
                     PRNEREICMYSSFQYRGGPGAGAAAGAAGASPVEEGPPPPPGAAAPAGSAPGAAGAGA
                     SPGLGAGTGAASGAGGGSGSGSGEGLPFRRGIRLLDSGSVENVLQVGFHLSGTVTEAA
                     TASEPAVTYKVAISFDRCKITSVSCGCGNKDIFYCAHVVALSLYRIRKPEQVKLRLPI
                     SETLFQMNRDQLQKFIQYLITAHHTEVLPTAQKLADEILSSNSEINQVNGAPDPTAGA
                     SIDDENCWHLDEEQVKEQVKLFLSQGGYYGSGKQLNSMFAKVREMLRMRDSNGARMLT
                     LITEQFMADPRLTLWRQQGTSMTDKCRQLWDELGALWVCIILNPHCKLEEKSCWLQQL
                     QKWSDLDICPLEDGNYGHELPSITNALSQSASHSPDSLSRPRRTVFTRAIEGRELHWQ
                     DSHLQRIISSDIYTAPACQRENERLLFNSHGQPLWLEHVPTACARVDALRSHGYPKEA
                     LRLTVAIINTLRLQQQRQLEIYKHQKKELLQRGTTTITNLEGWVGHPLDPIGCLFLTL
                     TEACRLNDDSYMEMSDVNESRVPVYQHVPVASGCPSSNESYLSLALEVALMGMGQQRV
                     MPEGLYAQDKVCRNEEQLLSQLQELQLDEELVQTLRKQCILLLEGGPFSGLGEVIHRE
                     SVPMHTFAKYLFSALLPHDPDLSYKLALRAMRLPVLENSSSASDPAHPHHRVSVVPSR
                     YPRWLTLGHLESQQCELASTMLTAAKGDTLRLRTILEAIQKHIHSSSLIFKLAQDAFK
                     IATPTDSSADSTLLNVALELGLQVMRMTLSTLNWRRREMVRWLVTCATEVGVRALVSI
                     LQSWYTLFTPTEATSIVAATAVSHTTILRLSLDYPQREELASCARTLALQCAMKDPQS
                     CALSALTLCEKDHIAFEAAYQIAIDAAAGGMTHSQLFTIARYMELRGYPLRAFKLASL
                     AMSHLNLAYNQDTHPAINDVLWACALSHSLGKNELAALIPLVVKSVHCATVLSDILRR
                     CTVTAPGLAGIPGRRSSGKLMSTDKAPLRQLLDATINAYINTTHSRLTHISPRHYGEF
                     IEFLSKARETFLLPQDGHLQFAQFIDNLKQIYKGKKKLMLLVRERFG"
     exon            643..999
                     /gene="Zswim5"
                     /inference="alignment:Splign:2.1.0"
     exon            1000..1148
                     /gene="Zswim5"
                     /inference="alignment:Splign:2.1.0"
     exon            1149..1299
                     /gene="Zswim5"
                     /inference="alignment:Splign:2.1.0"
     exon            1300..1479
                     /gene="Zswim5"
                     /inference="alignment:Splign:2.1.0"
     exon            1480..1656
                     /gene="Zswim5"
                     /inference="alignment:Splign:2.1.0"
     exon            1657..1803
                     /gene="Zswim5"
                     /inference="alignment:Splign:2.1.0"
     exon            1804..1941
                     /gene="Zswim5"
                     /inference="alignment:Splign:2.1.0"
     exon            1942..2202
                     /gene="Zswim5"
                     /inference="alignment:Splign:2.1.0"
     exon            2203..2338
                     /gene="Zswim5"
                     /inference="alignment:Splign:2.1.0"
     exon            2339..2496
                     /gene="Zswim5"
                     /inference="alignment:Splign:2.1.0"
     exon            2497..2660
                     /gene="Zswim5"
                     /inference="alignment:Splign:2.1.0"
     exon            2661..2742
                     /gene="Zswim5"
                     /inference="alignment:Splign:2.1.0"
     exon            2743..5555
                     /gene="Zswim5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agtcagtcag tcagtcccca gcaatggcgg aaggaggtga gcgagaggag ctgctttcgc
       61 cgccgccgat ctctccggcc aagaggctgt gctcttggcc cagcccgcaa gctcaccacc
      121 cccgcgggac tcccggggca gccggcggag gggcgggggg cggcggcggc agctgcctgg
      181 cccccggggc ccgcccccac ctgcagccgg agtccttgct ggactgcgcc gccaagacgg
      241 tggcggaaaa gtgggcgtac gagcgggtag aggagcgttt cgagcggatc ccagagccgg
      301 tgcagcgccg catcgtctac tggtccttcc cgcggaatga gcgggagatc tgcatgtact
      361 ccagcttcca gtaccggggc ggcccgggcg ccggcgcggc tgccggcgcg gcgggggctt
      421 cgccggtcga ggaggggccg ccgccacccc ccggggccgc cgctccggcc ggctccgccc
      481 ccggggccgc cggggcgggc gcgtcccccg ggctgggcgc tgggactggc gcggcgagcg
      541 gcgccggcgg cggcagcggc agcggcagcg gcgaggggct gccgttccgc cggggcatcc
      601 gtctgctgga cagcggctcc gtggagaacg tgctgcaagt cggcttccat ctgagtggca
      661 cagtgacgga agcagccact gcgtcggagc cagcagtcac ttacaaagtt gcaatcagtt
      721 ttgatcgatg caaaatcact tcggtgagct gcggctgtgg aaataaggac atattctact
      781 gtgctcatgt ggtagcactc tctctctaca ggatccggaa accagagcaa gtcaaacttc
      841 gtcttcctat ctcagaaacc cttttccaga tgaacaggga ccagcttcag aagtttattc
      901 aatacttaat cacagcacac cacactgaag ttcttcctac tgcacaaaag ctggcagacg
      961 aaattctgtc ctccaactca gaaatcaacc aagtgaatgg tgcccctgac cccacagctg
     1021 gggccagcat cgatgacgag aactgttggc acttggatga agaacaggtg aaagaacaag
     1081 tgaagctttt tctctcccag gggggctact atggctctgg gaagcagctc aattcaatgt
     1141 ttgccaaggt tcgagagatg cttcggatga gagattccaa cggagccagg atgctgacac
     1201 ttatcactga acaatttatg gctgatcccc gcctcacact ctggaggcag caaggaacaa
     1261 gcatgacaga caagtgtagg cagctctggg acgagctagg ggctttatgg gtgtgtataa
     1321 ttttaaaccc acactgcaaa ctggaagaaa aatcttgttg gcttcagcag ctgcagaagt
     1381 ggagcgacct ggatatctgt cccctggagg acgggaacta tgggcacgaa ctgcccagca
     1441 ttaccaatgc actttcccag agtgccagcc acagcccaga ctctttatcc agaccgagac
     1501 gaacagtctt cactagagcc attgaaggtc gtgagttaca ttggcaagac agccacctac
     1561 agcgaataat cagcagtgat atctatacag ctcctgcctg ccagcgggaa aatgagcggc
     1621 tactctttaa ttcccatggc cagccactgt ggctagagca tgtacctaca gcctgtgctc
     1681 gggttgatgc gctgcgatct catgggtatc caaaagaggc tctcagactc acggtggcca
     1741 tcattaatac tctgaggttg cagcagcagc ggcagctgga gatctacaaa catcagaaga
     1801 aagagttgtt gcagagagga acaacaacaa tcacaaacct ggagggctgg gtgggccatc
     1861 ccctggatcc cattggctgc ctgtttctca ctttgactga ggcctgccgc ctgaatgatg
     1921 acagctacat ggagatgtca gatgtgaatg aaagcagagt tcctgtctac cagcacgtcc
     1981 ctgtggcttc tggctgccca agtagcaatg agtcgtacct gtcattggcc ctggaagtcg
     2041 ccctcatggg catgggtcaa cagagggtga tgcctgaagg cctctatgca caggacaagg
     2101 tgtgccgtaa tgaggagcaa ctcctgagcc aactccagga gctgcagctg gatgaggagc
     2161 tagtgcagac cctgcggaaa cagtgcatct tactgctgga aggaggcccc ttcagcggtc
     2221 taggagaagt tatccaccgg gagagtgttc ccatgcacac ctttgcaaag tatttgttct
     2281 cagctctgct gcctcatgat ccagacctgt cttataagtt agccttacgt gccatgaggt
     2341 tacctgttct agaaaactcg tcttctgcaa gcgaccctgc ccacccccat cacagggtgt
     2401 cagtggtgcc cagccgctat cctcgctggc tcactctcgg gcacttggaa tcacagcagt
     2461 gtgaactggc ctccaccatg ctgactgctg ccaaagggga tacactgagg ctacgaacta
     2521 ttctggaagc aatacagaag cacatccatt cttcctccct catcttcaaa ctagctcaag
     2581 atgcattcaa gattgctact cccacagaca gcagtgcaga cagcactctg ctcaacgtag
     2641 ccctggagct ggggttacag gtgatgcgca tgaccttatc aacccttaat tggaggcgcc
     2701 gagagatggt tcgatggctg gttacttgtg ctacagaagt gggtgtgcgg gccctggtga
     2761 gcatcttgca gagctggtac acactcttca ccccgaccga ggctacaagt attgtggctg
     2821 ccacagctgt atcccatacc actatcctgc gcctcagtct tgactatcca cagcgggagg
     2881 aactggctag ctgtgctcgc acactggccc tacaatgtgc tatgaaggat ccacagagct
     2941 gtgccttatc agctcttaca ctttgtgaga aagaccacat tgcctttgag gcagcctacc
     3001 agattgccat agatgctgct gccggtggca tgactcattc acagctgttc accattgccc
     3061 gctacatgga gctccgtggc tacccgctac gtgccttcaa gctggcctca ctggccatga
     3121 gccatcttaa cctggcctac aaccaggaca cccatccagc catcaatgat gtgctctggg
     3181 cttgtgctct cagccactct ctgggcaaga atgaactagc agctctcatc cccctggtgg
     3241 tgaaaagtgt gcactgcgct acagtgcttt ctgatattct gcgtcggtgc acagtgactg
     3301 caccaggcct ggcaggcatc ccaggccggc gcagctctgg aaagctcatg tcaacagaca
     3361 aagctccact gcgccagcta ctggatgcaa ccatcaatgc ctacatcaat accacacatt
     3421 cccgtctgac acacatcagt ccccgccact atggagagtt cattgagttt ctgagcaagg
     3481 ctcgtgaaac cttcctactg ccccaggatg gtcacttgca atttgcccaa ttcattgaca
     3541 acctcaaaca gatatacaaa ggcaagaaga agctgatgct gctggttcgg gagcgcttcg
     3601 gctgagaaag tggatagctt gctgctaggg cagcctgggc tcccaggtca ggacaaggac
     3661 tctgaaacat ctgtctaccc tgagaggact cagtacttgt ggctgagcca aaagtaccac
     3721 agacctaagg atggggagag tccaacttta gccagtattc ccgccttggc aagcttctca
     3781 ctccagccct actgttcctg gaggagctgg accctgcaga ccggtcgaag cccccacaac
     3841 atgtcacctc acgcccctat atcctgcgtg tcctggccat tggccccact cccttggcaa
     3901 acacagaaca ctgttccgtc tcagggattg cttaaccaga gaaaacagaa gcatttatgg
     3961 tactgtaaat actatagtat atgtgttgtc aagcattgta aagctgtaac tatttataat
     4021 tccgactctg atttgacggg cacttaaagt agctgtgggt gggaggagag gcttgttttc
     4081 tgaggagact cacaaccatt tctcaggttt cccatacaga gtatatgctg ttggcagtgg
     4141 ataagtgggg gcggcaggga gaaaaataga cagttgaaat ccaagtcttg tctgtgcaga
     4201 aaactgtggc ctgaagatag gacaactagc ctagtggtca ttacggggca gaggtcaaga
     4261 gtgggcttag atatttgcct cacaaagttg tgagcactga agctcctgcc tctgcctcac
     4321 acactccagg agcctgagga acacctgagt agcaagtgcc aggagaagac aaaggtccag
     4381 gaagccactg agcttagaag atacatctgc tctggtcacc cttgttagag aatctgcgtt
     4441 catctccagt ctgtatgtgt gtatatctgt atgaacatgt gtctgtgtac acatacacgt
     4501 gtgcatgcct gtgtcacttc tgttgtgtga catgcgttag gctgggtttc atttgtgtgt
     4561 gataatgcat acctacgtgt taagtatacc catgtcttca tgtttagtgt atgtgcgtat
     4621 ctaggctcac acgggtacct gtgtataaac atgtttgtct cttgagtgta tgcctgctga
     4681 ccatgatgtg tctttatgtg agcggtctct ccatgtagtc tgtcagtgtc ttcacacttg
     4741 aggatctgca tgagtgtgcc ttctttctgc caactctctc ttgcccatcc attccttagt
     4801 ctcctgctag ccaagcattg ttacacatct ctatgcctcc tgtttacctt ctctcagcaa
     4861 acacgtttct aagcacgtgt ccccctgctc ttaagactgg ccactttcgc tccatggttc
     4921 tttttttaca caaacatgtt ttcttcctcc aactctctac ctcagacttc ctctgcctac
     4981 tttcatcata atcccattgg tagctcattt ggaggctaag gctggtattc ctttagcctt
     5041 gccctcttaa tttctagttc tagcggataa gccccatctt agcccatgct gatctccaca
     5101 gtgtatcata ttcgtactac ttcatgaccc ctctgcttag cctggaattg taggaggtag
     5161 caagggcatt cagaagactc agttggaaac agttgtcttc ggcgtttact gttgtgtctt
     5221 agttccaggg ttgggtgggg tttgataggg agggagtagc tagagtatga actaaggacc
     5281 tttctgtctg atttacttta tttttctctt tgaaaactac ttgtcatctt tttaattcca
     5341 agctgaccag taagttgtat ccactgttcg tggctactaa tgtgttactg tccagccaag
     5401 ggcccacact gtctcagccc aatgggttgg cagacaaagg ggaagccact tccatttccc
     5461 ccatcatgat tgcccttttt tagcaagtat gtgaactcag tgcttttcta tgaataaatc
     5521 atggatcaca gaaaagattt ttctaaaagc agaaa
//
