LOCUS       NM_001400760            5388 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus zinc finger and SCAN domain containing 30
            (Zscan30), mRNA.
ACCESSION   NM_001400760 XM_006254480
VERSION     NM_001400760.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5388)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000018.1.
            
            On Jan 26, 2022 this sequence version replaced XM_006254480.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643295.55681.1,
                                           SRR26643429.53464.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840122 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-47                JAXUCZ010000018.1  15540907-15540953   c
            48-456              JAXUCZ010000018.1  15533937-15534345   c
            457-631             JAXUCZ010000018.1  15533473-15533647   c
            632-5388            JAXUCZ010000018.1  15524313-15529069   c
FEATURES             Location/Qualifiers
     source          1..5388
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /map="18p12"
     gene            1..5388
                     /gene="Zscan30"
                     /gene_synonym="AABR07031494.1; Zfp397os; Znf397; Znf397os;
                     Zpf397os"
                     /note="zinc finger and SCAN domain containing 30"
                     /db_xref="GeneID:364827"
                     /db_xref="RGD:1306095"
     exon            1..47
                     /gene="Zscan30"
                     /gene_synonym="AABR07031494.1; Zfp397os; Znf397; Znf397os;
                     Zpf397os"
                     /inference="alignment:Splign:2.1.0"
     exon            48..456
                     /gene="Zscan30"
                     /gene_synonym="AABR07031494.1; Zfp397os; Znf397; Znf397os;
                     Zpf397os"
                     /inference="alignment:Splign:2.1.0"
     CDS             49..1653
                     /gene="Zscan30"
                     /gene_synonym="AABR07031494.1; Zfp397os; Znf397; Znf397os;
                     Zpf397os"
                     /note="zinc finger protein 397 opposite strand"
                     /codon_start=1
                     /product="zinc finger and SCAN domain-containing protein
                     30"
                     /protein_id="NP_001387689.1"
                     /db_xref="GeneID:364827"
                     /db_xref="RGD:1306095"
                     /translation="MSRETAALACRAPKGQSGLSFVKTEEKDGVWKQDFGFQGHLQSQ
                     EVFRQQFRQFGYSDFTGPRQALNQLQKFCQQWLRPEEHSKEQILELLVLEQFLTILPM
                     ELKAWVQEHGPRNGEEAVTLLEELEREFDEPKHQNTAHGQEMICKETTLMGMSESLSS
                     PLQSLENHCKSELQEPQVFHERDKATLPFRVEDEDSKMATGKALTAKQEGIECVASVA
                     MESPGRLPRETSPVQRVEETMEFLDNEKQQGSDDTSNKTSPLSSQEGGFSLAPFSKKT
                     PTEQNIFEYNESEGILSQNLHGTTQPRTDTGKLLYACMDCGKAFCNRSKLIRHQRSHT
                     GERPYACKECGKAFGFRADLVRHQRIHSGEKPYKCCDCGKAFGNNTGLTRHRRIHTGE
                     KPYGCDECGRAFSQCSTLIQHKKIHSGEKPYSCEECGRAFVQSSALIQHKKIHSGDKG
                     FKCTECGKTFWTSYVLREHQRIHTGEKPYQCNECGKSFNRSTALTVHQRTHSGEKPYE
                     CNECRKTFRHRSGLVRHQRTHTRVKL"
     exon            457..631
                     /gene="Zscan30"
                     /gene_synonym="AABR07031494.1; Zfp397os; Znf397; Znf397os;
                     Zpf397os"
                     /inference="alignment:Splign:2.1.0"
     exon            632..5388
                     /gene="Zscan30"
                     /gene_synonym="AABR07031494.1; Zfp397os; Znf397; Znf397os;
                     Zpf397os"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtggctttcc ggcttcccag ggctgtgcag gtaacgtgcg gagcgaggat gtccagagaa
       61 acagcggcct tggcctgtcg tgctccaaaa ggacaaagtg ggctcagctt tgtgaaaact
      121 gaagagaaag atggtgtttg gaagcaggac tttggtttcc agggacacct ccagagccag
      181 gaggttttcc gtcagcagtt cagacagttt ggctactctg atttcactgg gccccggcag
      241 gctctgaacc aactgcagaa gttttgccag caatggctga ggccagagga gcactccaag
      301 gagcagatcc ttgagctgct ggtgctggag cagtttctga ccatcttgcc tatggagcta
      361 aaggcctggg tgcaagaaca cgggcccaga aatggagagg aggctgtgac tctgttggag
      421 gagctggaga gagaatttga tgaacccaag caccagaaca cagctcatgg tcaagaaatg
      481 atctgcaaag aaacgacact catgggaatg tcggagtctc tgagtagtcc actgcagtcc
      541 ttggaaaacc attgcaagag tgaacttcag gagccccagg ttttccatga gagagacaag
      601 gcgaccctac catttagggt tgaggatgaa gacagcaaga tggcaactgg gaaagcattg
      661 acagcaaagc aagaagggat tgaatgtgtt gcatcagtgg ccatggaatc tccaggaaga
      721 cttcctaggg aaacttctcc agtacagaga gttgaagaaa ctatggaatt tctggacaac
      781 gagaagcaac aaggaagtga tgatacaagc aacaaaacga gtccgctttc ttctcaggaa
      841 ggcggtttca gtttggcacc ctttagcaag aaaacgccta cagaacagaa catctttgag
      901 tataatgaaa gtgaagggat ccttagtcaa aacttacatg gtactacaca gcccagaact
      961 gacacaggga aactgctcta tgcatgcatg gattgtggga aagctttttg caataggtca
     1021 aagctgatta gacatcagag aagtcatact ggagagagac cttatgcatg taaagaatgt
     1081 ggaaaggcct ttggtttcag agcagacctt gttagacatc agagaattca cagtggtgaa
     1141 aaaccctata aatgctgtga ctgtggaaaa gcttttggga acaacacagg gcttactagg
     1201 cataggagaa ttcatactgg agagaaacct tatggttgtg atgagtgtgg gagagccttc
     1261 agtcagtgtt ctactcttat tcagcataag aagattcaca gtggagagaa accttacagt
     1321 tgtgaagaat gtggaagagc cttcgtccag agttctgctc ttattcagca taagaagatt
     1381 cacagtggag ataaaggctt taaatgcact gaatgtggga aaactttttg gacaagttat
     1441 gttcttaggg aacatcaaag aatccacact ggtgagaaac cttatcaatg taatgaatgt
     1501 ggaaagtcct ttaatagaag cacagcactc actgttcacc aaagaactca ctctggggag
     1561 aaaccttatg aatgtaatga atgtaggaaa acatttaggc ataggtcagg ccttgtgcga
     1621 catcagagaa cacacaccag agttaaactc tgagggtaag tggttgtaca actgtgaaat
     1681 gtaaggaatt ctctttgaag gcgagactcc acagaagata gagaagtttc ctaatggcag
     1741 gacttttgtc tttccagccc agttcttttc tgaaaaaaag agatccacac aaaatgcttg
     1801 catattgaaa gaagaatttt atccagaact tgtctacaaa gaatggtatt ttctaagggg
     1861 ggaaaagact gactcatttc tggatgagga ctctaaccca tctgttcttc atcccacttc
     1921 actgcagata gaactgccat tgagcacctt catgtaagtc catgactgag gcacagatcc
     1981 taagatctct ataagatctg tctagtgttt gtgcctgaca ggatatttta agaattactg
     2041 aaccctgaaa tgtttaattg aggctatgaa atgtcatgtc ctggatcagt ttcatatctg
     2101 aggaatggaa aagcaccctt gttagtgctt ttaaccctta gctttctgct gcagtctatt
     2161 tccttatttg gaaattgctg ggcttagcca ctggagaaca ggcttggtca ttgcactctc
     2221 caaattaaag gctaatagaa tatacatatt taagtgtgtg gcaataactg ccagataaat
     2281 tcagggttct gttggaagac atatcagaga tgttttctga tctatgagtt aactaaaaat
     2341 tccttggatg tgatattgag atgtaaaaat gtagaagcag cagcttggct aatggcagaa
     2401 cagaggcaga ggtcatagca tacatggcac gatgagaaga ggatatggag acattcctgt
     2461 attttgaccc tcgttcagaa gccagattgg tttcttctcc tgttggtaat agcctgagtt
     2521 ggataatgta tttcacatca taagtgacct acatgatcta gaagtattca gaattatgat
     2581 agaaaataaa actggtgttt ctaaagtcat gcctgtatac taaggaaaca gcaggcatgg
     2641 gaagctgaag gacactggag tctggagcgt ccttggcatt aggtttgcag atgataagcc
     2701 acttgaggga aatacagagc cagtccttcg gattctacag aattcttcct tgagtttaat
     2761 ttggcagttt taattaatcc acaattgctg tgggtaattt ctacctagga gtgtacttta
     2821 aaaaaaaaac aaaacacttg gtaataatcg ctattgtgag taaatgaggt gacattggat
     2881 atggtacttc taaaggttgt gcaatttatc atttaagatc taccataaag ggatcattca
     2941 aatggacagt gaattgcctt ttcttatagg tgacaagtga atgagtcaat gttttaaata
     3001 tttatccttt ttctaattgt gaatgttgat aaatcaagtc atccataatc ccattaccca
     3061 tagcaaaatt aacttttgaa cttcctatta aagtttttcc ccaattctaa tagttttggt
     3121 aagaatctag tgtgactttg ctaaccttta acatttatat gttcagtttg cactccagct
     3181 gcttagtact gtcagcgtgt aatggtaatg tactgtaata aaactgaaat tttaaagttt
     3241 tgcttttaaa tcattccagt aaagaacaga acatgagtgg agttatgctg gagggtggaa
     3301 agggtagaaa agagaagtag cacacttaat ttctacttct tggattaaat aaatagcatc
     3361 aggaagctca gactttaagg ttgagttgtt gaagagaagg agaacaaatc cacctagata
     3421 tcctccttct tcaatactaa gaaagacctt tggaatcact actccagaat tatgtgtatg
     3481 tgaatgcaaa tgcctgcaga agccagaaga ggacacttga agtagagtta caggggtaca
     3541 ccacccaatg tgggttctgg gaatggaact ctgaccctct gtaagagtag tcctgctctt
     3601 aaccactgag ctctctctct agtcctatgt tttgagtaat tttgagacag ggtttcacat
     3661 aaaagcctag gctggcccaa gagatgtgac tttctccttg gcagttcaca aacaaaagta
     3721 ggttattagg ccattgtcaa atgtcttaaa gttcaagtct ctcagttttg gttgcgggca
     3781 gtggaaatga ggaagaaaaa gggtgactga tttaagagtc atgtaaggca agtgctgctt
     3841 tctagacttt ttagacagcc tctggagcaa aggggagaaa ggcatggagc agagaaaagg
     3901 gcattatttt ctttcagaaa aggttgttga gggctgaaga gatggctcag cggttaagag
     3961 cactgactgc tcttccagag gtcatgagtt caattcccag ccaccacatg gtggctcaca
     4021 accatctgta atgagatctg gtgccctctt ctggcctgca gtcacatatg caggcagagt
     4081 gctgtacata aaataaataa atctttaaaa aaaagaaaaa gaaaaggctg ttgaaagaca
     4141 aaacaacttt ttctttcagc tcatgttggt gtccactctg tttcataaag actgaaactt
     4201 aagatcatct tcagctcttt aacatgagaa tatagtcaag ataacttgtg tatgcctgct
     4261 gaattcatgg gaaagcacta atgaccaaag ctgttaacca cctacaagac tcgcttttct
     4321 cagccgtaga tctttaagca tgtgagttac ccacacagga gactggaagg ggactcttgt
     4381 acattatgga gcaggtaagt gtgcattgaa ctcatcacag tgacagacca gagctaagtc
     4441 tgttagagct aaggcagggg ttagaggaag cgagtactta ctcttactgc tgttttgggc
     4501 tgtttttgtt ccctaccagc cacacagggc tgggatcaag catgggcctt aaacacagtg
     4561 agctcatgat ttacaactga attattctct agcccctggc tctatacgca gtattagatt
     4621 ttgtagtaaa acctgaaata taaaaaagga cattacctgt agctttacca cccagaagta
     4681 actactgtaa catcttgaca ttgtatgttt ctattttaat gcatgtgttt tacatggggt
     4741 cactgttgta tagattatgt atttaatata ttatgaatct tcaacacatt ttaacagcta
     4801 agactgcatg gtcatggttt aaatatattt ctgggtagaa tttcaaagac aaaggcagtg
     4861 agtgcttaag gcttctgata ttgattggca gaaatatgca gtcacatcca tcagcaagag
     4921 agtcctaatt tgcctgaatc cttattaatt ttatatgaaa aacaagtatc actttcattc
     4981 ttgcgccaat atgatggtgt aagaccgaac ataaatggat tgttgagtgg cacttctggg
     5041 atctgttaaa atgttaacaa ttttttcatg gatagtgtta atgtgctccc agaaaagggt
     5101 tctgatttca aattctgacc ttgtaactac aagtctccat ttcctatgta caaaatatga
     5161 tttgtactaa tgactaacac atacacaaag cccttggcaa gcacctgtta catctctctc
     5221 tgatctatgt aagagctcca gaatatttcc cttttgtaaa cattatccta cttaacaact
     5281 acattaggca tttggcttgt tattcttact ggttagtaca tactcaccta taaatgtcca
     5341 agacaggatt acttttgtgt cctcataaaa attgtttttc tcttttta
//
