LOCUS       NM_001408804            3447 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus zinc finger and SCAN domain containing 22
            (Zscan22), transcript variant 1, mRNA.
ACCESSION   NM_001408804 XM_039100796
VERSION     NM_001408804.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3447)
  AUTHORS   Jiao,K., Zhou,Y. and Hogan,B.L.
  TITLE     Identification of mZnf8, a mouse Kruppel-like transcriptional
            repressor, as a novel nuclear interaction partner of Smad1
  JOURNAL   Mol Cell Biol 22 (21), 7633-7644 (2002)
   PUBMED   12370310
REFERENCE   2  (bases 1 to 3447)
  AUTHORS   Mesa,K., Gebelein,B., Cook,T. and Urrutia,R.
  TITLE     Identification and characterization of zinc finger encoding genes
            from the tumoral exocrine pancreatic cell line AR42J
  JOURNAL   Cancer Lett 103 (2), 143-149 (1996)
   PUBMED   8635150
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Jun 27, 2022 this sequence version replaced XM_039100796.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360176.638545.1,
                                           SRR26643293.1477.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-192               JAXUCZ010000001.1  82588520-82588711
            193-674             JAXUCZ010000001.1  82594366-82594847
            675-3447            JAXUCZ010000001.1  82597180-82599952
FEATURES             Location/Qualifiers
     source          1..3447
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q21"
     gene            1..3447
                     /gene="Zscan22"
                     /gene_synonym="AZF4; Zfp128; Znf128"
                     /note="zinc finger and SCAN domain containing 22"
                     /db_xref="GeneID:102553002"
                     /db_xref="RGD:7606541"
     exon            1..192
                     /gene="Zscan22"
                     /gene_synonym="AZF4; Zfp128; Znf128"
                     /inference="alignment:Splign:2.1.0"
     exon            193..674
                     /gene="Zscan22"
                     /gene_synonym="AZF4; Zfp128; Znf128"
                     /inference="alignment:Splign:2.1.0"
     CDS             275..1762
                     /gene="Zscan22"
                     /gene_synonym="AZF4; Zfp128; Znf128"
                     /note="isoform a is encoded by transcript variant 1; zinc
                     finger protein 8-like; zinc finger protein 4; zinc finger
                     and SCAN domain-containing protein 22-like; zinc finger
                     protein 128"
                     /codon_start=1
                     /product="zinc finger and SCAN domain containing 22
                     isoform a"
                     /protein_id="NP_001395733.1"
                     /db_xref="GeneID:102553002"
                     /db_xref="RGD:7606541"
                     /translation="MAIPKSSLSPVLWEQDSFLQVKVKEEEASDSQSQESSPSFTAHP
                     EAARLRFRHFRYEEASSPHQALAQLRELCCQWLRPESSSKEQMLELLVLEQFLGALPP
                     EIQAWVGAQCPKSGKEAAVLVEDMTQLLDRRGWEPGMDREEASCKQSNTDELEPPEMA
                     TETIMGSVSPESTLAQTCKPENSSESQPELLGALWVKSTAQEVDLKKALEPRMDAPND
                     QPDHESDASGNDCSMLPKFPSEDKTSSEEKCGPLLDNETVPLDTCSEKKSSKDSECMR
                     TLQNTSAQETHQKNHSQKTPYTCIECGKVFSRSTHLVQHQVVHTGAKPHACKECGKAF
                     SRVAHLTQHQRIHTGEKPYKCEECGKTFSRSTHLTQHQRVHTGERPYECDTCGKAFSQ
                     STHLTQHQRIHTGEKPYRCEVCGKAFSDCSALVRHLRVHSGEKPYRCKDCPKAFAQSS
                     SLIEHQRTHTGEKPYKCSDCGKAFSRSSALMMHLKLHITVSRSTP"
     exon            675..3447
                     /gene="Zscan22"
                     /gene_synonym="AZF4; Zfp128; Znf128"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cacgaaggcg catgtgtata cgtcaccagg gcgccagaga agtgactgct gggagttccg
       61 gagacccggt gagcgcggga accctggcat ggaagggtga gagctgcgaa cgcccacgcc
      121 aaacctaacg gcctgtgagt acaggacaga gtgtgggacg gactgattga agtatgggac
      181 gactgacgga atatggtgat gaagctctaa catttcttca gacccaattc tgagacttga
      241 gtcatccctg tgactcactg aattcttctg cccaatggcc atccccaaga gctctctgag
      301 cccagtactc tgggaacagg atagcttcct gcaggtgaag gtgaaagagg aagaagctag
      361 cgactctcag agccaggaat ccagccctag ctttactgcc caccctgagg ctgcacgctt
      421 gcgcttcagg cacttccggt atgaggaggc atccagcccc catcaggcgc tagcccaact
      481 gcgagagcta tgctgccagt ggctgaggcc agagtcgtcc tccaaagaac agatgctgga
      541 gttgctggtg ctggaacagt tcctgggtgc gctgccccct gagatccagg cctgggtggg
      601 tgctcagtgc ccaaagagtg gaaaggaggc cgccgttctg gtggaggata tgactcaact
      661 gctggacagg agaggatggg agccaggaat ggaccgtgaa gaggcaagtt gcaaacagag
      721 caatacagat gaattggagc caccagaaat ggccactgaa accatcatgg gaagtgtttc
      781 cccagagtct acccttgccc agacttgtaa acctgagaac agctcagaga gccagccaga
      841 gctcctagga gcactctggg tgaagtctac tgcccaagag gtggatttaa aaaaagctct
      901 ggagcctcgc atggatgccc ccaatgacca gcctgaccat gagtctgatg cctcaggaaa
      961 cgattgcagt atgttgccca aattcccttc tgaagacaag acttcttcag aggagaaatg
     1021 tggcccgtta cttgataatg agacagtgcc tctagacaca tgttcagaga agaagtcctc
     1081 caaggatagt gaatgtatga gaacactcca gaacacgtca gcccaagaga cccaccagaa
     1141 gaaccactct cagaagacac cctatacctg tattgaatgt gggaaggtat tcagtcggag
     1201 cacccacctt gtccaacacc aggttgttca cacaggagca aagccccatg catgtaaaga
     1261 gtgtggtaaa gccttcagtc gagttgccca cctgacccag caccagagga ttcatactgg
     1321 ggagaaacct tataaatgtg aagaatgtgg aaaaaccttc agccgcagca cccacctcac
     1381 gcagcatcag cgggtacaca caggcgagcg gccctacgag tgtgatacat gcggcaaagc
     1441 ctttagccag agcacccacc tgacacagca ccagcgtatc cacactggag agaagcccta
     1501 caggtgtgaa gtgtgtggga aagccttcag tgactgttca gctctggtcc ggcacctgag
     1561 agtccactcc ggagagaagc cttatcggtg taaggactgc cccaaggcct tcgcacaaag
     1621 ctcctccctc attgagcacc agcgcactca cacgggtgaa aagccttata aatgcagtga
     1681 ctgtgggaaa gcttttagcc gcagctcagc tctcatgatg cacctaaagc tccacatcac
     1741 cgtgtctcga agcacccctt agagtacagc acagccccct gagaggtttg acatctaaga
     1801 aaccctgaat tccacaagag ccaaaaccac catgggctga cagttgtgct acctagtgtc
     1861 taaggacaga gtggggctat ctgggaacac ctctacattt gaggtcccag gggaagtccc
     1921 ctaatgaaca cagattcaga ccaattggtg aagcttccta ctgccctcca tatcccactc
     1981 aggctggtcc cagagagaag atactagtga actaatgatc tgcattgttt cttggaacca
     2041 gatcaagtaa agccaggtgt ctttccaggc tcagatggcc caagatcctc taggcaggaa
     2101 gacccaagct tcaggttctc acatggctac tgttcttgcc agttcatttg atggtcagcc
     2161 tagaatggcc cactctgtgc cttcatacct gcttccccac tgtattactt tatgactgac
     2221 tccaagacag acttgtgagg gtacctctcc aggccatccc tctcatgttc tccctgcttt
     2281 aatccatagt gatgcttaac acttgcccag catctgtctt ttcctcctac gtctcccttc
     2341 cacatctcac aggctccagc cctgtggatt cacctcaggc tcatctctaa cctagccact
     2401 cctccagcat catctcctgt gaccttaccc tgcctcccat tggattttta tcagggttct
     2461 cctttctcac ctctttattc ctggtccatc tctttttgct acccagatca cagtgagtca
     2521 ttccatgaca taatatgttg tcagtgagtc acctcttcaa caaacaagca tgccgggata
     2581 cgtgtcactt tgacccaagc aattactcta gttatcctca aatgtgtgta taaatgttgt
     2641 catatgtctt tgagcacagt gtgtgaaagt gatttcaaag tactggtctg cctattgggc
     2701 aaactactcc ttgtctgttg tcttctgttt gctctagtcc tggcctcctc ttgcctcttc
     2761 cactccttgt agcctcacct cccacatgcc ggccatactt tctcccacct gtgtgccttt
     2821 ctatctgccc ctggaatcct gaggcctttc ctctttgatg tctcagacac cattgaaaag
     2881 cttccccaaa cactttgacc tgaccttatc ttgcctgaga ctctcttgct gctagggtac
     2941 cccattatta atgtcttaaa cctcttacta tgttattgtg cttgtacttc ttacacaatg
     3001 cataggccag cgctcccaaa gtattttata ctgtggacat ggagcataag atgcagcaaa
     3061 accccttccc gatgtctcta ggatgtgtat aatcaatacc ttccttgggt agtcactgtc
     3121 ctccacccca tgttttcttc ataaagacat ttatggaaga gcccctgtgc ccatataagt
     3181 ccatctgtaa tggtcaaaat aaaacatggc tttactgagc cttccttgcc tccagtccta
     3241 aagtcctggg taccatagac ttaagggact ctgccaatcc taaaatcata acctgtttac
     3301 tttgcctgcc ttcctttccc tcagaaagat aatcccctgg ctcctgtacc tcctgactaa
     3361 tatgggtgat ttcacaaggt tctcagtcat ggatctacat aagctactgt atctacatcc
     3421 attagcataa tacattgttt tcctgaa
//
