LOCUS       XM_039111244            8495 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zinc finger and SCAN domain containing
            20 (Zscan20), transcript variant X1, mRNA.
ACCESSION   XM_039111244
VERSION     XM_039111244.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8495
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..8495
                     /gene="Zscan20"
                     /note="zinc finger and SCAN domain containing 20; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 10 ESTs, 4 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     8 samples with support for all annotated introns"
                     /db_xref="GeneID:500549"
                     /db_xref="RGD:1562996"
     CDS             16..3402
                     /gene="Zscan20"
                     /codon_start=1
                     /product="zinc finger and SCAN domain-containing protein
                     20 isoform X1"
                     /protein_id="XP_038967172.1"
                     /db_xref="GeneID:500549"
                     /db_xref="RGD:1562996"
                     /translation="MPFGSCGLRGRVPGLAAPGLCVPAFPARAREHFRPVVKWVSLWV
                     SLGGGWGAAETQALGWRLWSLGEQSLPRSTHRQCRKPPDEDDPAKVEHPGQMMAVASP
                     PPEPEDLLIVKLEEDSWGSRSRPEESSHSSVPGPEVSRLCFRQFQYQDAAGPHEAFSQ
                     LWALCCRWLRPELRLKEQILELLVLEQFLSILPREVQTWVQARHPESGEEAVALVEDW
                     HREAWAAGQQGLELCTEDTRSFEAVQEFQRFQLQPVAHCSERQPQKQRVEKTHPGLSK
                     MPPESLKESAVFTPQAPSVPKMASAGDWEMAAKSQETLSPSRQAQEEPCQDPEGEDCG
                     NSACLGVPASKPSVASQHEQGAETLGLSLLNFGTGSAADGSVDSEQDKAARGAAQADA
                     RAWVEPCQWGTEDMKVSGVHWGYEETKAFLAILSESPFSEKLQTCHQNRQVYRAIAER
                     LRARGFLRTLEQCRYRVKNLLRNYRKAKNSRPPGTCPFYEELEALVRARTAIRRTTGG
                     PGEAVALARLGDSDTEMDDQDEGSWESEEATQDCSGSGLAAEESIHGPRIAGGPALLQ
                     SRIAGMHWGFEETKVFLAILSESPFSEKLRTCHQNSQIYRAIAERLRALGFLRTLEQC
                     RYRFKNLLRSYRKAKSSRPPGICPFYEEMDSLMRARTVIRAMETVGEAIGLPGPGQSG
                     TEADDQEAWGEMEDAGAIRLLTPDSQTPGTGFELKPEDEYQISERDDLGDSPGALSRY
                     TREAVCQPHGWREDHENGDEGEWRNTLPWDECSSEEDLEKLIDHQGLYLTEEPYRCDT
                     HVKSFSRKVHCFAPQRIHAGEKPYKCLDTGKSFSDHANLSTHQRIHVGEKPYRCLECG
                     KSFNDPSNLITHQRTHTGEKPYKYGVCWKSFTESSNRLKPQRIHLQGTPDQRNEPGED
                     FGQSPSFSAYWRDSTRERPKQPQNISMGADSPGACHPNSGEKLYPCPECGRCFSKNSA
                     LMSHQRIHTGEKPYECVECGRSFSKSSSLANHLRTHTGEKPHKCADCGKCFSERSKLI
                     THHRVHTGEKPYKCPECGKFFRDRSNLITHQRIHTGEKPYKCRECGKCFNQSSSLNIH
                     QRIHTGEKPYKCTECGKDFNNSSHFSAHRRTHTGGKAPPN"
ORIGIN      
        1 accggtgctc gcgcgatgcc ttttgggagt tgtggtctta gaggccgggt tcccgggctg
       61 gcggcgccag gactctgcgt cccagcattc cctgcaagag cccgggagca cttccgccct
      121 gttgtgaagt gggtgtctct gtgggtgagt ctgggtggcg gatggggtgc agctgagact
      181 caggcgctgg gctggaggct ttggagtctt ggggagcagt ccctcccaag aagtacacat
      241 cgtcaatgca ggaagccacc ggatgaggac gaccctgcta aagtggagca tccaggccag
      301 atgatggctg tggcctcgcc cccgcccgag ccggaagacc tccttatcgt gaagctggag
      361 gaggactcgt ggggatcacg ctccaggcct gaggagagca gccatagctc tgtccctggc
      421 cccgaagttt cccgcctgtg tttcaggcag ttccagtacc aggatgcggc tggaccccat
      481 gaggccttca gccagctctg ggctctctgc tgtcgttggc tgagacctga gcttcgcctg
      541 aaagaacaga ttctggagct gttggtgctg gagcagttcc tatctatctt acccagggag
      601 gtgcagacct gggtgcaggc acgacacccc gagagcggag aggaggcggt ggccctggtg
      661 gaggattggc accgagaggc ctgggctgct ggacagcagg gtctggagct gtgcactgaa
      721 gacaccaggt cctttgaagc agttcaggag ttccagaggt tccagctgca gccagtggcc
      781 cactgctctg agagacagcc ccagaaacag agggtggaga agacacatcc tggcctttcc
      841 aagatgccac ctgagtcctt gaaagagagt gctgtcttca caccccaagc cccaagtgtt
      901 ccaaagatgg cgagcgctgg agattgggag atggcagcca agtcccagga aaccctgagc
      961 cccagtagac aagcccagga ggagccctgc caggaccccg aaggagagga ttgtgggaac
     1021 agtgcatgcc tgggagttcc agcttcaaag ccaagtgtcg cctcccagca cgagcaagga
     1081 gcagagactt tgggtctgag ccttctaaat tttgggactg ggagcgccgc agatggtagc
     1141 gtggacagtg agcaagacaa ggcagcccgg ggagcagccc aggcagacgc aagggcctgg
     1201 gtcgagccat gccaatgggg cacggaggac atgaaggtgt caggtgtgca ctggggctat
     1261 gaggaaacca aggctttcct ggccatctta agtgagtccc ccttctctga gaagctccag
     1321 acttgtcacc agaaccgcca ggtataccgg gccattgccg agcggctgag agcacggggc
     1381 ttcctgcgga ctctggagca gtgccgctat agggtcaaaa acctgctacg gaattaccgg
     1441 aaggccaaga acagtcgtcc accagggacc tgccccttct acgaggagct ggaggccctg
     1501 gtgagggctc ggacagccat cagaagaacc acaggtgggc caggagaggc ggtagcactc
     1561 gccaggctgg gtgacagcga cactgagatg gatgaccaag acgaagggag ctgggagtct
     1621 gaggaggcaa cgcaggactg cagtggttct ggtctggccg ccgaggagtc cattcacggg
     1681 cccaggattg cagggggccc agctctgctc cagagccgta ttgcaggcat gcactggggc
     1741 ttcgaagaga ccaaggtctt tctggcaatc ctcagtgagt cccccttctc ggaaaagctt
     1801 cgtacctgtc accagaacag ccagatatac cgggccattg cggagcggct gcgggcactg
     1861 ggtttcctgc ggacactgga gcagtgccgc tacagattca aaaaccttct tcgaagctac
     1921 aggaaagcca agagcagtcg tccaccggga atctgccctt tctatgagga gatggactca
     1981 ctgatgaggg ctcggactgt gatcagggcc atggagacgg taggagaggc cataggtctt
     2041 cctggacctg ggcagagcgg tactgaggct gatgaccaag aggcctgggg cgagatggaa
     2101 gacgcgggtg ccattagact tctgactcca gattcccaga ctccaggtac aggttttgag
     2161 ttgaagcctg aggatgaata ccagatttca gagcgggatg atttggggga ttcgcctgga
     2221 gccttgtcaa gatacaccag agaagctgtt tgccagcctc acggctggag ggaggaccat
     2281 gagaatggag acgaggggga gtggaggaac actctcccat gggacgagtg ctcttctgag
     2341 gaggacttag aaaaactcat tgaccaccaa ggcctatacc tcacagagga accctacaga
     2401 tgtgacacac atgtgaagag cttcagtcgg aaagtgcatt gctttgcccc ccaacggatc
     2461 catgcaggtg aaaagcccta caagtgtctg gacactggga agagttttag tgaccatgcc
     2521 aacctcagta cccaccagag aatccatgtt ggagagaagc cttacagatg cctggagtgt
     2581 gggaagagct tcaatgaccc ctctaacctc atcacccacc agagaacgca cacaggggaa
     2641 aagccctata aatatggggt gtgttggaaa agtttcaccg agagctcaaa ccgactgaaa
     2701 cctcagcgca tccacttgca aggaactcct gaccagcgaa atgagcctgg ggaggacttt
     2761 ggccaaagtc catcatttag tgcttactgg agagattcta cacgggagag acctaaacaa
     2821 cctcagaata tcagcatggg tgcagactct cctggagcct gtcaccccaa ctcaggggag
     2881 aagctgtacc cgtgccctga atgtggaagg tgcttctcta agaactctgc cctcatgagt
     2941 caccagagaa tccacacagg cgagaagcca tacgagtgtg tggagtgtgg gaggagcttc
     3001 agtaagagct ccagcctggc taaccaccta cgaactcaca ccggtgagaa gccacataag
     3061 tgtgcggact gtggaaagtg cttcagcgag cgttccaagc tcatcaccca ccatagggtc
     3121 cacacgggag agaagcccta caagtgcccg gagtgtggaa agttcttcag agaccggtcc
     3181 aacctcatca cccaccagag aattcacaca ggagagaagc cgtataagtg cagagagtgt
     3241 ggaaagtgct ttaaccagag ttccagtctc aatattcacc agaggatcca caccggggag
     3301 aaaccctaca agtgcacaga atgtggcaaa gacttcaaca acagctccca cttcagtgcc
     3361 caccgcagaa cccatacggg agggaaagct cctcccaact gaagagcaat aatatgtatc
     3421 tatacctccc atgtttctaa aacatgctaa aagaaacctt cctatgttta agcttggtgt
     3481 aaacttaaaa gatgccatct tggtaaaact ccagtaattt ggagatgaat tacaactact
     3541 aaggattgaa gtttgaaata cttctcaagt gtaatttggt ttgcacaccc tcaacacacc
     3601 tagaatcccc aggctgtcct tacatcggct gtcacttgag agcttagtca gtgaggcaga
     3661 tgggtgatgt gggggttaga gttgaaccca tggcccaacg tattgattcc agtttcttcc
     3721 tctgccttca ctgcccttcc tatggaaagc agttcttgtt cttggtagtt tgcagttggg
     3781 gcaaatcctc acagggaaac cttgactcct cacagtgaga ggaggtgtaa attgagaacc
     3841 agcaagtgag gaagcagtga catcatcaca gaataattat ttatagcaga aaaagctgtt
     3901 ttttggcagc cagtacgcca agtgccttat gtatcatctc atttaatcct caaagcagtc
     3961 ctacttccca gagtagaaaa ccgaggacta ggaaagtcag gagacctgca ttaataacac
     4021 atctgaaaat gggggaggca gaatttatca agactcctgt gccgcagggc ctaagtggtt
     4081 gtgttccccc aagtcctctt acatgggggc aggtaggtgg tactaggatc tcaaagtatg
     4141 atcatcaagg aactctccct ttcacaatgg aagttgagag ttcctgcaga tcagaggatt
     4201 tggtacgttc agaattggtg aggcactctg catgaggctg agttgttacc agagtgacga
     4261 gaggagtcac catctttgga ggaatatggg tgagagaggt aggtagacag agcctggtat
     4321 atcttgcagc aaggtagtgc cctggctaca tagtgggttg aagagtcctt tctcagatca
     4381 gtcctgcttc tctacacatg gctgagcaca ggtgaacagg tcttaccaaa caggccttcc
     4441 tgtagccagt catgcctgcc ttttggtctc tctggctcat gtttttttca tttccaatcc
     4501 tggtgcctga ggtggaagga gttgacacat tgtcctctac tgagagggct tgaaagtggt
     4561 tccatattct atgttcatgg caccatttta acttgaaccc tctcgtctca agctgcccag
     4621 tgtggtctct cagaccagcc actcagatag acaggccata gcagggaggt ctatacacag
     4681 tgattttctt gcttgtagca ctttggcttc catagttttt tccttagggt ttaaaaataa
     4741 tgactaagga tgactttggc gttcctagat ttttaaagga aggcgacttc cttacatcta
     4801 catgtgacct tagaatgcca ctcgcatccc agttactcca gggctgtgtg gcaaatagtg
     4861 attggataat agctgggaag aactttggag aaagcatgtg agaaagcagg tagaaggtct
     4921 tgccaccccc tcgaaaggag gtcgctccct agccttcttg taccagaact cccttcccag
     4981 gagccagtcc acccgaggct actttcagcc aactctcttc agtttacctt tcctggctca
     5041 tcttatctct gaggatcagg ggtcatgggg tgagttctgg ctagagatca gcaaatgtct
     5101 gtggctacat cggaagatag atagaatacc ctgggtctga aaggaagggt ctggaagtag
     5161 agaagaacat tctagagaaa gttactgagg tacgaaggag catgggtcct aggtggaggt
     5221 agaggtccag gtttgtagtc tcgggtaagg gactgggatg gtgggagggt ggcatctggg
     5281 gttgcataag tgctgggtca aggtcattct aggtgcagca acatctccag ctctttcctt
     5341 tcacaagttg gaagtttagc caggtgggcc cttcatggtg ctaatctcta tcaatcccag
     5401 cctcacattc agcacatgcc ttagctgtaa ttaaattgcc tagtgctctt tttctctcca
     5461 aatggtacat tttgtgtttg tttctttctc atttgctgtt tttcattgca gccccacata
     5521 agagttattg gtactaacca tgccacagcc acaatgttat actgctttaa aatactcctt
     5581 aaaaaaaaaa aatcagttca ttacttttaa acttagcctt gggcaagttc ttagagcaca
     5641 ggcacaaggc agtcagatta tttgccagat tatcacagaa atggtctcat atcccagttc
     5701 ctgatagaga ctttgtttcc ttcagaatcc tcttgagctg ggcccccacc atctgcattt
     5761 ccatcagtac tgctattgtc ctgactctta ctatcatggc ccactaagct ttgcatacag
     5821 cattctaccc ccaaacacag agcagagaga acaaactgga actgagtgag attataagca
     5881 atcaaagccc ccccaagccc cagtggcata cctttccctg caaggctctg cctcctaaag
     5941 gttccatcca ctcccaaaca gcaccaccgt tgagggtcaa attcaagtac ctgaatctat
     6001 gggtaacatt tctcattcaa accaccacag tcatatggat ggaccttaga tggcacactc
     6061 agggtgatgt gttcagatgt gtgttgtcaa aatctaacaa ctgattggag ctcaaatgtg
     6121 ttgctgtctg gttgtatgga aatatcccag ttaaaaaagt taaaagggtt tgaatggttg
     6181 cagtggttct gttgagggag gagatatctt tctagggttt cagaagaaga cttaaggaga
     6241 gccgaggaaa gtgaagggtg tttgttgcct gaatggagca tccatggctc caaggggaca
     6301 aaatgtagac acaggaaagc agatgatgta agcttagtct gtgacattag gttcctaatg
     6361 ggtctttgag taacaattca tttgtatgtt tgagcctgaa gttgggggag agaatatatc
     6421 tagagagtta tatatgtggg tatggaggta aattcacaag gaagggatta tattcaaaag
     6481 tagtattgtt cttaagatag aaccgaagaa gcaccaaaat gtgaagggag atgcccctca
     6541 aggcaatgtg gaccactccc caccttactc tcataatctt ttggacactg ccacccttgc
     6601 ttgttgaacc ctggcttctt gtatagcctt gggctttctg gaagcttcac tgtggaggac
     6661 tgagcttgct gaggaagtga aatggcttcc tggaccttgt cctttctttt gctgtgggac
     6721 tgtgttagtg tctcttattt gcagtgatgg ttattgggac tgtgctagtg tctcttgctt
     6781 tcagtcatgg cttgttggga ctatgctagt gtctcttgtt tgcagtgatg actgttgcga
     6841 ctgtgctagt gtctcttgtt tgctgtggtg gctgttggga ctgtgctaat gtttcttgtt
     6901 tgcagtgatg gccgttggga ctgtgctagt gtctcttgtt tgcagtgatg gctgttggga
     6961 ctgtggtagt atctcttgct ttcagtcctg gcttctgctg cccttattat cttttgctat
     7021 tatttgctct tcagccacca aagcagggta gcaggggcca ggagaactgt ctactcaagt
     7081 ttttgagaaa tcactcaaga gatgtctgtt ttagacctac ccctccacct tgcctgtatc
     7141 cccaggcatc cttcagaagg acttttctgc ttgagtaaat tggtatctgg gttttacctt
     7201 attcttcttg gtaggtagat tcactttaca cagtggtgga cacaattcct tagccctagt
     7261 tctggaaacc agagtggtgc ttactgcctt aggagagttt tatgtttggc taggagtagg
     7321 ctaaaggcct cccctttcac aggcttggga cagagcaaca gacttaaagg taaggaaggt
     7381 aagggaaaca tgggcgagct tctctggagc ctaaagcagt ttctcttagc actgaactca
     7441 aagtttatat atgactgcct ttcctgaccc ctctccaaag cagagcgaag cagatgagag
     7501 ttctggcccc agtgcagcta gctctgttat aggctacaga ggagagctgg tatttactga
     7561 ctcttgggtc atggagcaag tctaaaaaca aataatttta ttgccttatt aggggctggg
     7621 gagattgatt catacctata aaagtctgtt ttctccctcc accacatgga tcaaacttgg
     7681 gtcaccagac ttggtggcaa gtgcctttac ctgctgagtc acctccctga cccagggacc
     7741 cagcagcttt tgagaaatga atactacagt gtttggagtg aaagtgggca tggcgggcat
     7801 cctttgtgtt ccagggtgct gcgaagtctg ctagccccaa cacttcccat tttccctccc
     7861 ctttccactt cttctgcatg ggtgctgatg acttggctct gtctcctttc caggtctctt
     7921 gtgagctggc tgtctgccat ccagccctgc ttgtggtgac ttctgggcca cctgtaccat
     7981 ctccaggttc ttcgcctatg cagtcgtcac atatatgccc actcggcagc cctcatgtag
     8041 ccccggggag ctctacacac tcatcccagc cttagactca gcccctcaga catgatttct
     8101 cctcaggtgt tccagattgg gttgggttcc ctagctgctg gaccaggcag ttcctaaagt
     8161 taaaacgaat cgcacaaagt ccagttttta cctcagttag atcccttcct tgcattggat
     8221 gtcccttaca ctctccagtt tgcagtaaac accattctta cctcctatcc cagtttgctc
     8281 cgagaggtct atgcagcctg ctgggtgggg tagggcaggg tttgaagaag agctgggcct
     8341 gctgggaagg agtggcaatg tggttattca tccttatcac cccctcccct cacgaggtct
     8401 tagccaatgt agtggtgact cacttctcga gaaagagaaa gaggaggagg aaaaagaaga
     8461 agaagcagca gcagagggtg ttagaccccc ccccc
//
