LOCUS       XM_006229465            2360 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zinc finger and SCAN domain containing
            2 (Zscan2), mRNA.
ACCESSION   XM_006229465
VERSION     XM_006229465.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 2, 2024 this sequence was replaced by
            NM_001427723.1.
            
            On Jan 21, 2021 this sequence version replaced XM_006229465.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-279               JACYVU010000040.1  2314312-2314590
            280-444             JACYVU010000040.1  2316744-2316908
            445-445             "N"                1-1
            446-784             JACYVU010000040.1  2316909-2317247
            785-2360            JACYVU010000040.1  2327993-2329568
FEATURES             Location/Qualifiers
     source          1..2360
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2360
                     /gene="Zscan2"
                     /note="zinc finger and SCAN domain containing 2; The
                     sequence of the model RefSeq transcript was modified
                     relative to its source genomic sequence to represent the
                     inferred CDS: inserted 1 base in 1 codon; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 ESTs, 174 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     108 samples with support for all annotated introns"
                     /db_xref="GeneID:683603"
                     /db_xref="RGD:1584548"
     CDS             382..2226
                     /gene="Zscan2"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: zinc finger and SCAN
                     domain-containing protein 2"
                     /protein_id="XP_006229527.2"
                     /db_xref="GeneID:683603"
                     /db_xref="RGD:1584548"
                     /translation="MAAEVPAVSTPLSPLAQVPQEXDEQAEVTTMILEDDSWVQEAVL
                     QEDGPESEPFPQSTGKGSPQEEGTAEGPRGALVRFRELCRRWLRPEVHTKEQMLTVLP
                     REIQAWLQEHRPESSEEAVALVEDLTQTFPHNDFEIQSENGENSNQDVFEDVESHETF
                     LKIPGGEGGQQSDGESDFERDCGSGGAQGNVPGEEHRDLPSEGREVGQLIGLQGTYLG
                     EKPYECPQCGKTFSRKSHLITHERTHTGEKYYKCEECGKSFSDGSNFSRHQTTHTGEK
                     PYKCRDCGKSFSRSANLITHQRIHTGEKPFQCAECGKSFSRSPNLIAHQRTHTGEKPY
                     SCPECGKSFGNRSSLNTHQGIHTGEKPYACKECGESFSYNSNLIRHQRIHTGEKPYKC
                     TECGQKFSQSSALITHRRTHTGEKPYQCSECGKSFSRSSNLATHRRTHLVEKPYKCGV
                     CGKSFSQSSSLIAHQGMHTGEKPYECLTCGESFSWSSNLIKHQRIHTGEKPYKCGDCG
                     KCFSQRSQLVVHQRTHTGEKPYQCLMCGKSFSRGSILVMHQRAHLGEKPYRCPECGKG
                     FSWNSVLIIHQRIHTGEKPYKCPECGKGFSNSSNFITHQRTHLKEKLY"
ORIGIN      
        1 actacatttc acacaatgca tcgggccgac ctacctccca cagcccagct ggacgctgtt
       61 ttcaccatag tagagtagaa tttgagaact gtcgtggata gccaatgaga gtggctgtgg
      121 gcgggcctct cctgtccatt gttctctgtg ccccttgggc ttgagctgag gtgaatccag
      181 aggggccgga ccgggtcggg ccagaccgag gggtgctttt gcgcgcagag agatagcggg
      241 atcaggactg gtccctggag aggcgagcgg gagaggcagc agtgtttctt gttaagattg
      301 gaggaaagac agccttctca gagagcctgg ctggagacag gtgtgagact tgaagcctct
      361 gtgatcatcc aggaagctgc aatggcagct gaagtgccag cagtgagcac tcccctcagc
      421 cctttggctc aggtgcctca agaanaagat gaacaggcag aggttaccac tatgatcctg
      481 gaggatgatt cgtgggtaca ggaagcagtg ctgcaggagg atggccccga gtctgagccc
      541 tttccccaga gtactggaaa aggcagccct caagaggagg gtacagctga gggacctcgg
      601 ggtgcgcttg tccgatttcg ggagctctgt cggcgctggc tgaggccaga ggtgcacact
      661 aaggaacaga tgctgactgt gcttccaaga gagattcagg cctggctgca agaacatcgt
      721 cctgagagca gcgaggaggc agtggccctg gtggaagact tgacccagac ttttccgcac
      781 aatgattttg agatacagag tgagaatggg gagaactcaa atcaagacgt gtttgaggat
      841 gtggaatcac acgagacgtt cttgaaaatc cctggagggg agggtggtca gcagtcggat
      901 ggggagagtg actttgagag agactgtggc tcaggaggcg cccagggaaa tgtcccaggt
      961 gaggagcaca gggacctgcc atcggaagga agggaagttg gccagctaat aggccttcag
     1021 ggcacctacc tgggtgagaa gccttatgag tgtccccagt gtgggaaaac tttcagccgg
     1081 aagtcccacc tcatcaccca tgaacggacg cacacaggag agaagtacta caaatgtgag
     1141 gagtgtggga agagctttag tgacggctcg aacttcagta gacaccaaac gactcacacc
     1201 ggagagaaac cgtacaaatg ccgggactgt gggaagagct ttagccggag cgcgaacctt
     1261 atcacgcacc agaggatcca cacaggcgag aagcctttcc agtgtgccga gtgtggcaag
     1321 agcttcagcc ggagccccaa cctcatcgct catcagcgca cgcacacagg tgaaaaaccg
     1381 tactcatgcc ctgagtgtgg gaagagcttt ggcaaccgat ccagccttaa tactcaccag
     1441 ggaattcaca ctggagaaaa accctatgcg tgtaaggaat gtggcgaaag cttcagttac
     1501 aactccaacc tgatcagaca ccagaggatc cacacgggag agaaaccata caaatgtacc
     1561 gagtgcggac agaagttcag ccagagctca gcgctcatta cccaccgaag aacacacacg
     1621 ggggagaagc cgtatcagtg cagcgagtgc ggcaaaagct tcagccgcag ctccaatctg
     1681 gccactcacc ggcgaaccca cctggtggag aagccctaca agtgtggggt gtgtggcaag
     1741 agcttcagcc agagctccag cctgatcgca caccagggca tgcacacggg ggagaagccc
     1801 tatgagtgcc ttacgtgcgg agagagcttc agctggagct ccaacctcat caagcaccag
     1861 aggatccaca ccggggagaa gccatacaaa tgcggcgact gtgggaaatg cttcagccag
     1921 cgctcgcagc tggtagtgca ccagcggact cacacggggg agaagcccta ccagtgcctc
     1981 atgtgtggga agagcttcag ccggggttcc attctggtaa tgcaccagcg cgcgcacttg
     2041 ggagagaagc cttacaggtg ccccgagtgt gggaaaggct tcagttggaa ctcagttctc
     2101 atcatacacc agcggattca tacgggagag aagccctaca agtgccccga gtgtggcaaa
     2161 ggcttcagca atagctccaa ctttatcacg caccagagga ctcacctgaa agagaaactt
     2221 tactgaagcg gctgtagaga gaagggaagt gcggagccga gctgactctg aagggagaat
     2281 tcccacagtg cccccccccc aatgttgtcc ctttcaaaga accagttttc ctaaatactc
     2341 tttgtgagtt tttgccagaa
//
