LOCUS       XM_008758843            7294 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zinc finger and SCAN domain containing
            18 (Zscan18), transcript variant X1, mRNA.
ACCESSION   XM_008758843
VERSION     XM_008758843.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 11, 2024 this sequence was replaced by
            NM_001427176.1.
            
            On Jan 21, 2021 this sequence version replaced XM_008758843.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7294
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7294
                     /gene="Zscan18"
                     /note="zinc finger and SCAN domain containing 18; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 12 ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 41 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:499083"
                     /db_xref="RGD:1560671"
     CDS             3529..6204
                     /gene="Zscan18"
                     /codon_start=1
                     /product="zinc finger and SCAN domain-containing protein
                     18 isoform X1"
                     /protein_id="XP_008757065.1"
                     /db_xref="GeneID:499083"
                     /db_xref="RGD:1560671"
                     /translation="MLPLERVLASPRSSPPQPEPSTLRSEDTAQQEEPSQQEECRRQD
                     ELIQKEEPIKLLEPSQRDEPNQGEEFSEQDDPPNQGEEFSEQDDPPNQGEEFSEQDDP
                     PNQREEFSEQDDPPNQREEFSEQDDPPNQGEEFSEQDDPPNQREEFSEQDDPPNQGEE
                     FSEQDDPPNQREEFSEQDDPPNQGEELSEQQEPSRRDEPNQEEESVQLQEPSQREEPD
                     EKDVPMQQEEPMQQDEPSQWEEPMQQDEPMQQTEPIEQHKPIQQEELIQQEGPIEQEK
                     PIQQEELIQQEGSIEEHKSIQQEELIQQEEPIEQEKPIQQEELIQQEEPIEQEKPIQQ
                     EELIQQEEPIEQEKPIQQEEPIEQEESIEQNAFIQKELIYQDEPIEQELVQQEEFIQQ
                     NKFIQKEEFIQQGEPIQQDASIQHELIHQVGPIHQDEPIQKELILQEDFIQQVGFSEQ
                     EELSQQEKPHQRKETETITERSAADLEFSRLRFREFVYQEAAGPHQTLARLHELCRQW
                     LRPEACSKEQILELLVLEQFLGILPDRVRPWVVAQYPENCKKAASLVEGISDILEESG
                     MMLCSPGGSSSSFSEGDYERCPEPLLLPCGLLSPSRNLRPREILVCRDTSPLLPAWPT
                     LESVHLDQEHTEGEKSEKANSATVELKEPLQSEWDHLDPTEDNLTSYSKLLLWGCQFS
                     QAGPSSMLETEKSCVVEELPGSSLPDSTGQQESNGNVCEEVSLGETLMESLSGDVPVS
                     PLIDTTLEEKQQPQKALDAEDEAEDSSPTSPQRQSVIQQSAQDKDRPHQGTGTKRPHP
                     DDEDEEDPECLSSTSSYQLPFDAGKVLHVDGDEPSGKDPGISAGGCSATDEFNASQGK
                     PYTCSECGEAFAWISNLMEHHKSHGSETCYVSQGY"
ORIGIN      
        1 taagagagag gagggagcaa gcagcccctt atatagtcaa gcacagctgg ctgttgcttg
       61 gcaactgtgg ggaagaatat acctggctgt tcggaggtag ctgtgggggg tggagcttag
      121 acagaatacc aacaataaca atctatccca ctcacaggtt ttattgtttc acacagaaag
      181 catttaacaa agccctttat gaaattagga gtaaagggga actttattta cttagaaagg
      241 acatagatgg ttagcacaat tgacgttgaa gatttgtttc tatctaatgg cagacagggc
      301 aaggatgtct cttgttccct tcactactga gtatcacact agaaactcca aatcactgta
      361 actaggcaga aagaagagtc atagtacaag tctctttaaa ttttcagaaa ggtagttttg
      421 tttttttgca tggctggttg gttgtgaggg tgtttgaagc aatctctgtt tgtaaccctc
      481 gctggctctg aactcaaaat gctgccccag gtccgaagtc tggggtagca ggcatgtgtt
      541 acaatgtctg gcccccacca actatttttt ttgtgcatgt agacaaactt attctaaagc
      601 tcttgtggta aagcaaaagg cttctctaaa actactttga aaaaaaatga gagaatgaac
      661 gctccccagt gttcttattc tgcagccgta atgatcagaa aagtgtggtg atggagcaga
      721 acagaggcag gaatagaccc acaaagatac tcccgacaga gattttttaa atgcagaagg
      781 ctatttaaca gagatgggct aacctcaaca aatgatgcta gagaagttta catctgtggt
      841 ataaaataca tttttgtttt gtccctggtt gctggcacag agctaacaat tttttggtaa
      901 gtgttattta ttcataagga acccctttca accacacttt atattgacaa atgataggat
      961 ccctagattc catcggtaaa gggccttgtc accagggaat taacagatga aaactgaagc
     1021 attttcagct aaaacaaaac aaaacaaaac atcctccaaa aaccttgttg gcttgacaag
     1081 tgtgtgcatg cgctgagaga gtggtccctc atcttctata ctcatacttc tccttaacca
     1141 ccatcttact tacccactct ccccctcaaa cattacccac cataccgctt ttattgctct
     1201 gttccttatt gtttccagga tatttcatag taaactggta aacagaggca aagtgtgttc
     1261 ctatgttctt tgagctgttc taggaaattg ggtgatggaa tggcgggcac catcagccca
     1321 acactgtgtg gtatcctgca gttggcgtct aaaatgagat caagtccttg gcctgttcaa
     1381 ttgcactcct tctgagtggt atactgagag aatgaatttg caaactgtat ctggcagctt
     1441 acaggtaaaa ataaataaag atctctttaa actcagcctt catttaaaac tagaaaatgg
     1501 gctgggtggt agtgtcacat gcctttagtc tcagcactga ggaagcagag gcaggcagat
     1561 ctctgtgagt ctgaggccag cctgctctac agagtgagtt ccaggacagc cagtgttaga
     1621 gaaaccctgg ctcaaacaaa aaacaacaac aacaacaaca aaaaaaaaat gaaaatgggt
     1681 gaaacaaatc aactgatact taagaggata cacagatgcc aaataaccat ggaaataggc
     1741 tcaacattac tggtcattag ggaaatggaa actaaaccac aatacaatca gtatacttag
     1801 aatgcctaaa agactgacaa ccaccaaaat gctggcaaga ctgtgaaaaa aatgatttca
     1861 tacatacact ggttggtggg cctgtaaaat ggcatagctc tagaaaaggg tatgggagtt
     1921 ttttcattgg tttagttttt aacattaagc atatacttac tttatgacat aactgtgtca
     1981 tgagtaatgt tcacacaaaa acttgatcat gaattttcat agcatctatt aaatatcaaa
     2041 aatttggaag caggcctaaa gtccaactgg tgaatgtgta aacttgtata ttatcgaatt
     2101 ttaagcagta acaaggaaca aacgcacact aatggattcc aaaggaatta cgtacagtga
     2161 aaaagtatct caaaaggcta tggggctata accccgtact atggggttat atttatatga
     2221 aatccacagg gacaaatctg cactgaggga ccacacatca ggggtcagag gtggtggtag
     2281 ggtgtgattg ttaaaaaagg agtagtgaaa ctgttatgat tgtggtatca gttaaaatta
     2341 tcagaacaga ataaagtgtt ttttgtttgt ataaataagg aataaaaacg tttttgatgg
     2401 taagtaagtc agctacacat tttaaaaaca aagctagacg gggctgggga tttagctcag
     2461 tggtagagcg cttacctagg aagcgcaagg ccctgggttc ggtccccagc tccgaaaaaa
     2521 aaaaagaacc aaaaaaaaaa aaaaaaccca aaaaacaaaa aacaaagcta gacaaccaaa
     2581 atgactttca aaggctctgc tgtggaaagc agccgccttc ccatctctgc agggtcgtcc
     2641 tcctctttcc cctttttgtc ttgttgctca atcaaatcta ccaaagattt ggtaaggtgt
     2701 ttgaccagtt tactctctga aacctttaac tgttttcagc cagtctgttc agtgccttcg
     2761 tccctgtcta tctctggagc cttgcctcag ggtgtttctc tacagtgggt ttttagccct
     2821 gtttgcccac ggtggatctg cgcacttgtt tcttgactgt tcatggtctt gagtctccat
     2881 ttatgctggg tccccatttt ttgtgtctgt aggtttccat ctcctcagtt tctctgtctc
     2941 atctctggtc ttctagacca ggtcttcact gtcttcgggt ctcaaggtgc ctgtgagttc
     3001 ttgtttctaa agtctgtata taatccagtc tttgtctccg cctctcaggt tctggtggtc
     3061 ctaggctctt ttttggaaga gagagaggga gagagggaga gagggaggag agggagagag
     3121 ggagagaggg agaggaggag aggaggagag ggagagggag aggccgcacg atcgcttgtt
     3181 tactccgttg ccatggcatc ggaagtgacg cgagtgcacg tggaggcgaa gcggagccag
     3241 tcttctctga ttgactggcg gtgcggtcat agcagcttcg ccccgcccag gtctggcgaa
     3301 cagccccgca gctcgcttgg ggttcgcagt ttacggtgct tcaggccgcg cacgcgtagt
     3361 gcagtgggcc gccatcgccg ctcggtgttc gaggctgcgg gagcccgtgg ggcaacgctg
     3421 cgcagcaggt tctggtactg ctgacttctc ttggttaccc tgttatactt gccatctttg
     3481 ctgagttctt ggctagacac agttatattt ctgtggcagc ctgggaagat gctgcctttg
     3541 gagagggtat tagcctcccc tagaagctcc ccaccccaac cagaaccatc tactctgcgg
     3601 tcagaagata cagcccagca ggaagaacct agccagcagg aggaatgcag gaggcaggat
     3661 gaactcatcc agaaagagga acccatcaag ctgctggaac ctagtcagag ggatgagccc
     3721 aaccaggggg aagaattcag tgagcaggat gatcctccca accaggggga agaattcagt
     3781 gagcaggatg atcctcccaa ccagggggaa gaattcagtg agcaggatga tcctcccaac
     3841 cagagggaag aattcagtga gcaggatgat cctcccaacc agagggaaga attcagtgag
     3901 caggatgatc ctcccaacca gggggaagaa ttcagtgagc aggatgatcc tcccaaccag
     3961 agggaagaat tcagtgagca ggatgatcct cccaaccagg gggaagaatt cagtgagcag
     4021 gatgatcctc ccaaccagag ggaagaattc agtgagcagg atgatcctcc caaccagggg
     4081 gaagaactca gtgagcagca agaacctagt cggcgggatg agcccaatca agaggaagag
     4141 tctgtccaac tgcaggaacc cagccagagg gaagaacctg acgagaagga tgtacctatg
     4201 cagcaggaag aacccatgca gcaggatgag cccagccagt gggaagaacc catgcagcag
     4261 gatgaaccca tgcagcagac agagcccatt gagcagcata aacccatcca acaggaagaa
     4321 ctcatccagc aggagggacc cattgagcag gaaaagccca tccaacagga agaactcatc
     4381 cagcaggagg gatccattga ggagcataaa tccatccaac aggaagaact catccagcag
     4441 gaggaaccca ttgagcagga aaagcccatc caacaggaag aactcatcca gcaggaggaa
     4501 cccattgagc aggaaaagcc catccaacag gaagaactca tccagcagga ggaacccatt
     4561 gagcaggaaa agcccatcca acaggaggag cccattgagc aggaggagag cattgagcag
     4621 aatgctttca tccagaagga actcatctat caggatgagc ccatcgaaca agaactggtt
     4681 cagcaggagg agttcattca gcagaataag ttcatccaaa aggaagaatt cattcagcag
     4741 ggcgagccca ttcagcagga tgcttctatc caacatgaac tcattcatca agtggggccc
     4801 attcatcagg atgagcccat ccaaaaggaa ctgattctac aggaggactt cattcagcag
     4861 gtagggttca gtgaacagga ggagctcagc caacaggaaa agcctcatca gcggaaggaa
     4921 acagaaacca tcactgagag atctgctgct gaccttgagt tctcccgcct gcgcttccgg
     4981 gagtttgtct accaggaggc agctgggcct caccagactt tggccaggct tcatgagcta
     5041 tgccgtcagt ggctgaggcc ggaggcctgc tccaaagagc agatcctgga gctgctggtt
     5101 ctggagcagt tcctgggcat cttgccagac agggtccgtc cctgggtggt agcccagtat
     5161 cctgagaatt gcaagaaagc tgcctccctg gtggagggta tctctgacat cctggaggag
     5221 tcaggaatga tgttgtgttc cccgggtggg tcatcatcgt cattcagcga gggagactat
     5281 gagaggtgtc ctgagcccct gctgctacca tgtgggttgc taagtcccag cagaaactta
     5341 agacccaggg agatcctggt atgccgagat acttctcccc tccttccagc ctggcctacg
     5401 ctggaatctg tgcatttgga tcaagagcat acagagggag aaaagagtga aaaggccaac
     5461 tctgccactg ttgagctgaa ggagcctcta cagtcggaat gggaccacct ggatcccaca
     5521 gaggataacc tgaccagtta cagcaaactg ctcctgtggg ggtgtcagtt ttcccaggct
     5581 ggtccatctt ccatgctgga gacagagaaa tcttgtgtgg tggaagaact gccagggagc
     5641 agcctcccag acagcaccgg gcagcaggaa agcaacggaa atgtgtgtga agaagtctct
     5701 ttgggggaga cactgatgga gagtctttca ggggatgttc ctgttagccc tttgatagat
     5761 actaccctgg aggagaaaca gcaacctcag aaggctttgg atgctgagga tgaggctgag
     5821 gattcaagcc ctaccagtcc ccagaggcaa tcagtcattc agcagtcagc ccaggacaag
     5881 gataggccac atcaaggcac tgggacaaag aggccccatc cagatgatga ggatgaagag
     5941 gaccctgagt gtctttccag caccagcagc tatcagctac catttgatgc agggaaggtg
     6001 cttcatgtgg atggtgatga accatctggg aaggacccag gaatttctgc tgggggatgc
     6061 tctgcaactg atgaatttaa tgcatctcaa gggaagccct atacatgcag tgaatgtgga
     6121 gaggcctttg catggatctc gaaccttatg gagcatcaca agagtcatgg cagtgagaca
     6181 tgctatgtga gccagggcta ctaggaaccc ttacagttca gcttagttgt ggtcaagcac
     6241 cccaagaatc acatacaaaa caacaaaaga aagccacacc tagagccctt ctctgccaca
     6301 agcaaaactc attgatggga agattggcag cttctagtgt gtgggtggtt ttccttatac
     6361 aacttgaggt gtaaggcaaa gcaactctgc tatgactgtc ccataacatg acagttgtaa
     6421 cctgagtgat cctaagattc gtgtagtagt ggattcttgt atttctacag gcatatctgt
     6481 gcttattttc tggatgctaa cgtgctcatc atcttagaaa cacactttgg tctgatgtta
     6541 tatcctgtaa actatcagat gtgttggaag actccatttc tgcagtactt taataccatt
     6601 cgtactctgg tcatttgaca ttgtacaaag tgttgagttg ccttaaagta tgtgatctgt
     6661 tggcgctttc ttgagccctt cttgcctcag ttgcttctcg agctccttgt ttgttcacat
     6721 ataattcttg ccatctattt tggccttttt gtaagtatgt gatgtcaggt ttacttctga
     6781 atccttaaga gcaaatgctg tttcttagtt caagtcacat atgtggagtg gcttgcaaag
     6841 atcacaaaat atgctgattt cagactgggt ttgagcccat ttgtgagttg tgaagtccgg
     6901 tcagtggatg gccactgata ctacaaaaca atgaagtaga atgaaaggtc agaatgcatc
     6961 atgtagtaaa agcaagtatt gttttgtgaa acttctcagc tgagtatctg agagctggca
     7021 accacattaa atatatttgt taaggggtac aagcatacag gttgaagaaa tgatctgtat
     7081 ctgagctgag agaaccaaat gtggcctaca taggtgatct tgtggttttg cttttaactt
     7141 cagattacaa cattgtttct attgcctgac cataaatgta attgctccgc agatacagaa
     7201 agggtgtctt tttctgtcag tgtttgagca ggcaatttgt gtaaccccca aatcagaggc
     7261 ttaccataat aaagtattta tttcttcatt cata
//
