LOCUS       XM_039096196            2416 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zinc finger and SCAN domain containing
            12 (Zscan12), transcript variant X1, mRNA.
ACCESSION   XM_039096196
VERSION     XM_039096196.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051352.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039096196.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2416
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2416
                     /gene="Zscan12"
                     /note="zinc finger and SCAN domain containing 12; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 5 ESTs, 3 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 101
                     samples with support for all annotated introns"
                     /db_xref="GeneID:266716"
                     /db_xref="RGD:628738"
     CDS             607..2118
                     /gene="Zscan12"
                     /codon_start=1
                     /product="zinc finger and SCAN domain-containing protein
                     12 isoform X1"
                     /protein_id="XP_038952124.1"
                     /db_xref="GeneID:266716"
                     /db_xref="RGD:628738"
                     /translation="MMASTNDTKICKNQDGLLEIKMEEECKYTTRQVRNLQKNTYNRD
                     VFRKYFRQFCYQETSGPREALSRLRELCHQWLRPDMHSKEQILELLVLEQFLTILPEE
                     LQAWVQEQNPESVEEVVTVLEDLERELDELGYRTSVQIEKQEMLLRETKPLAAEQKPS
                     VSLQFVKAKPGCELADGEAQEEQVSGIETGNESRNVTLKQGLWEGMEAEQNPSSRLAK
                     DTLKCEETRDPREESSGISREDSQPLRNENVVNLTENSNHAELQNICPGRKVHGCDEC
                     GKTFSQHSRLIEHRRIHTGDRPYRCEECGKTFRWRTVLIRHKVVHTGEKPYKCNECGR
                     AFGQWSALNQHQRLHSGEKHYHCNECGKAFCQKAGLFHHLKSHRRNRPYQCLQCNKSF
                     NRRSTLSQHQGVHTGTKPYECSDCGRAFVYNSSLATHQETHHKEKLFTQSGPSQQRKN
                     HTSEKSYKCSICGKTFVQKTSLIEHEQIHTEERPYKCAEGGKAFIQVSDLTEH"
ORIGIN      
        1 gtccgcgata gcttccggtt cctgggcgag ctgggttctc ttctcggcgc aggagctacg
       61 cggtgagcga gctcgtgctc caggctaggg gagaatgctc gctgctactt agactcgttc
      121 gtagaaagag gttggaagcc agggaaaggc caccagggcc gcagtgcggt cgcctacggg
      181 tacgcctggg gcgcagagcc ggtcgggacc taggcacgct gcagaacctg ttaggtttag
      241 aattacagaa gtggaggggc aggagaaaag cggtgacttc tccatctttt aacctttatg
      301 aatgattaag tctcagctaa agccagttcg cgagactgta ttgtgtatat atgatttgta
      361 tcaggtatgc agaaattttt caaaagcagc atggcaagag tagcctattc ttgtactctt
      421 cccgttatct tttgtggtat ctcacacggt aggcagcact tccccaacgc catccgctca
      481 ttctaaattt ttttgttttt atttcagtta gttgtggttt actttaggag ttagtggagg
      541 tctactcggt aagaaaattt accaaggagt tattacttga aacactgata aatcttttat
      601 atagctatga tggcatccac taacgatacc aagatctgta agaaccaaga tggacttttg
      661 gaaataaaaa tggaggaaga gtgtaagtat accaccagac aagttaggaa cctccaaaag
      721 aacacttata acagagacgt cttccgaaaa tacttcagac agttttgcta ccaggaaaca
      781 tctggacccc gggaggcttt gagccgactc cgggaacttt gccatcagtg gttgcgacca
      841 gacatgcaca gcaaggagca gatcctggag ctgctggtgc tggaacagtt cttgaccatc
      901 ctgcctgagg agctgcaggc ctgggtgcag gagcagaatc ctgagagtgt ggaggaggta
      961 gtgactgtgc tggaggattt agagagagaa ctagatgaac taggataccg gacctcagtc
     1021 caaattgaaa agcaggaaat gttgttacgg gagacgaagc ctttagcagc agagcagaaa
     1081 cccagtgtgt cccttcagtt tgtcaaagct aagccagggt gtgaacttgc agacggtgaa
     1141 gcccaggagg aacaagtttc aggtattgag actggaaatg aatccaggaa tgtaactcta
     1201 aagcaaggcc tctgggaagg aatggaagca gaacagaatc cctctagcag attagcaaag
     1261 gatacgctta agtgtgaaga aactcgtgac cctagagaag agtcttctgg tatttcccgt
     1321 gaagacagcc agccactgcg taatgaaaat gtggtaaatt tgactgagaa ctcaaaccac
     1381 gctgaactcc agaacatctg tccagggcga aaagtgcatg gatgtgatga gtgtggaaag
     1441 acttttagtc agcactcccg cctcatagag catagaagaa tccacactgg agacaggccc
     1501 tacagatgtg aagaatgtgg gaaaactttc cgatggagga ctgttcttat tcgacacaag
     1561 gtggtacaca ctggagagaa accatataaa tgtaatgaat gtggcagggc ttttggccag
     1621 tggtcagcgc ttaaccaaca tcagagactt cactcgggag aaaagcacta ccactgtaat
     1681 gaatgtggca aagccttttg ccagaaagca ggcctctttc accatctcaa gagccacagg
     1741 agaaacagac cttatcagtg tcttcagtgt aataaaagtt ttaatcgccg ttccacactt
     1801 tctcagcacc aaggagttca cactggtaca aaaccctatg aatgcagtga ttgtgggaga
     1861 gcttttgttt ataactcatc tcttgctacc catcaggaaa cccatcacaa ggagaaactc
     1921 ttcactcaaa gtggtcctag tcagcagcgg aagaaccaca ccagcgagaa gtcctataag
     1981 tgcagtatat gtggaaaaac atttgttcaa aaaacaagtc ttatagaaca tgagcaaatt
     2041 catactgaag agagaccata taaatgtgct gagggtggga aggcctttat tcaagtgtca
     2101 gatctcacag aacattaggg aacccacact gtgagaaagc cccacaaatg tgatgaatgt
     2161 gataatacct tcagacagga gtcagagcct agtaagcacc cgagaattca tagtagaagt
     2221 ggtccctaaa agtggggaat tgttcaccca caactcagct tttactcagc agactagtca
     2281 caaaaaagca agaactatgt gtgatgacta cagggaagcc atctcagtgt aggctgatga
     2341 gcaatattgt acttgtaatg ttttgtggca acacttcagc ctttgctgct ataaaactgt
     2401 aaatacttga tgagca
//
