LOCUS       XM_006249701            4214 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zinc finger RANBP2-type containing 3
            (Zranb3), transcript variant X1, mRNA.
ACCESSION   XM_006249701
VERSION     XM_006249701.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051348.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006249701.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006249701.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4214
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4214
                     /gene="Zranb3"
                     /note="zinc finger RANBP2-type containing 3; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 7 ESTs, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 6 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:304761"
                     /db_xref="RGD:1564952"
     CDS             150..3401
                     /gene="Zranb3"
                     /codon_start=1
                     /product="DNA annealing helicase and endonuclease ZRANB3
                     isoform X1"
                     /protein_id="XP_006249763.1"
                     /db_xref="GeneID:304761"
                     /db_xref="RGD:1564952"
                     /translation="MIKLGGQPFCPLVKEPPFPTSRSLRLTMPTAGEKRKAPTPWTSY
                     LTNEASAQLDFLPDKLRAKLLPFQKDGIVFALRRGGRCMVADEMGLGKTIQAIAISYF
                     YKEEWPLLIVVPSSLRYPWIEELEKWIPELEPEEINVITNKTDTGRIATSRVTVLGYG
                     LLTTDAETLLEALDRQNFRVVIVDESHYMKSRTAARSKILLPMVQKAQRAILLTGTPA
                     LGRPEELFMQIEALFPQRFGTWVEYAKRYCNAHIRYFGKRRQWDCRGASNLSELHQLL
                     NDIMIRRLKSEVLSQLPPKVRQRIPFDLAPATVKELNASFEEWQKLMRAPDAGAMETV
                     MGLITRMFKQTAIAKAGAVKDYIKMLLQNDSLKFLVFAHHLSMLQACTEAVIESKARY
                     IRIDGSVPSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTAASHVVFAELFWDPGH
                     IKQAEDRAHRIGQCSSVNIHYLIANGTLDSLMWAMLNRKAQVTGSTLNGRKEKLQATE
                     DDKEKWGFLQFAEAWTPSDSFEELKDPVFTHFEKEKQHDIRSFFLPKPRKRPLETSGD
                     AAEAVKEKTTVASDPRNMATKEGTTDKNGVEPETKRLKSLSTRDHCSALEEKPSLQAK
                     ATSIDGVHEVKSPLASPALSEKRWQCGFCTFLNDPGLPYCEMCESPQGRAAGLNHRQD
                     NNKEEKEESQKSTSKNDQARLHCVKPCSEQPEVERLARNKEETSKEQLSNSDTPPVCE
                     TFMFCASKNTDRIHLYTKDGKPMNCNFIPLDIKLDLWEDLPAIFQLKQNRSLILRFVR
                     EWSGLTAMKQRVIRKSGQLFRSPVLALEEITKQQAKESSTRRYITKEDVATASMNKVK
                     NEGGHIRLITKGSLTQNPSTKKPDRARVPSPNPGPSGHTAEPSPSQGYLQAVDKEGRP
                     LCLRCQHPTCQPEQGSKASAWDSRFCSLNCQEEFWIRSNNSYLRAQVFATEHGVCQLC
                     GVNAQELFLRMRDAPKSQRKNLLDSAWTAKLPLEQLNEMLRSPGEGHFWQVDHIRPVY
                     EGGGQCSLDNLQTLCTVCHKERTARQAKERSQVRRRSLATKHGSDITRFLVKK"
ORIGIN      
        1 atccaatcat cgtttgaaaa cccactttcg ctccacccca ttatcactgc gggcagcggg
       61 agaacgggac taagtctatc tccacccaca gaagaaaaag aaccaatccc tggcaagttg
      121 tcgtccttga aggacgcaag agacaaccaa tgataaagct aggaggacag ccattttgcc
      181 cacttgtgaa agagccacct tttcccacga gtaggagcct gaggctcacc atgcctacag
      241 ccggtgagaa aaggaaggct cctacaccct ggacttccta tctgacaaac gaagcatctg
      301 cacagctgga ttttttacca gacaagctga gagcaaaact gctcccattc caaaaggatg
      361 gcatcgtgtt tgccctcaga agaggtggca ggtgtatggt ggcggatgaa atgggcctcg
      421 ggaagacgat ccaggcgatc gcaatttcgt acttctacaa agaggagtgg cccctgctga
      481 tagtcgtccc ctcatctcta agataccctt ggatagaaga gctagaaaaa tggatcccag
      541 agctagagcc agaggaaatc aatgtcatca cgaataaaac tgacactggg agaatagcga
      601 ccagcagagt gacagttctg ggctatggtc tcctaaccac agacgcagag actttgctgg
      661 aggcactgga caggcagaac ttcagggtcg tgatagtgga cgagtcacac tacatgaagt
      721 ccagaactgc tgcccgcagc aagattctcc tgcccatggt gcagaaggcc cagagagcca
      781 ttcttctaac aggaacccca gctctgggaa ggcctgagga gcttttcatg cagattgagg
      841 cccttttccc acaaaggttt ggaacctggg tggagtatgc taagagatac tgcaatgcac
      901 atatcagata cttcgggaaa aggcgtcagt gggattgtag aggggcttca aacctcagtg
      961 agcttcacca gctcctcaac gacataatga tcagaagact gaagagcgaa gttttaagcc
     1021 agctgccccc gaaagtcaga cagcgcattc cctttgacct tgcaccagcc actgtcaagg
     1081 aactcaatgc cagctttgaa gaatggcaga aattaatgag agctccagat gcaggtgcca
     1141 tggagacagt gatggggctg ataacgcgca tgtttaaaca gactgcaatt gccaaggcag
     1201 gtgcagtgaa ggactatatt aagatgttgc ttcagaatga ctcacttaaa tttctggtct
     1261 ttgctcacca tttaagtatg ctccaagctt gcacagaagc agtcatcgaa agcaaggctc
     1321 gctacatcag gatagatgga agtgttccgt cctcagaaag aatccatctg gtcaatcagt
     1381 ttcagaagga ccccgatact cgtgtggcta tcctgagcat tcaggctgct ggccagggtt
     1441 taacgtttac cgccgcgagt cacgttgtct ttgctgagtt gttctgggac cctggacata
     1501 tcaaacaggc tgaagaccgt gctcaccgaa ttgggcagtg cagttctgtg aatattcact
     1561 acctgattgc aaacggaact ctggacagcc taatgtgggc gatgctgaat cgaaaggctc
     1621 aggtcacagg gagcacactg aacggcagaa aggagaaact ccaggctaca gaagatgaca
     1681 aagaaaagtg gggttttctg cagtttgctg aagcatggac cccaagcgac agttttgaag
     1741 agctcaagga ccctgtgttt actcactttg aaaaagaaaa gcagcatgac attcgatcgt
     1801 tcttcttacc gaaaccgaga aagagaccgt tggaaacgtc cggtgatgca gcagaggcag
     1861 tcaaggagaa gaccacagtg gcctcagacc ctagaaacat ggccaccaag gagggtacga
     1921 ctgacaaaaa tggggttgaa cctgaaacta aaaggttgaa atccctgagc accagggacc
     1981 actgcagtgc cctggaggaa aagccgtcct tgcaagccaa ggccacgtcc atcgacggtg
     2041 ttcatgaggt caagtcccca ttggcctccc cagccctttc tgagaagagg tggcagtgtg
     2101 gcttctgcac attcctcaat gacccaggcc ttccgtactg tgagatgtgt gagagccctc
     2161 agggcagagc tgctggcctc aaccatagac aggataacaa caaagaggag aaagaggagt
     2221 ctcagaaaag cacctccaaa aatgatcaag ctcgtctgca ctgtgtaaaa ccgtgctccg
     2281 aacagcccga agtggagcgg ttggccagga acaaggaaga aacatcgaaa gagcagttaa
     2341 gtaattcaga cactccgcca gtgtgtgaga ctttcatgtt ttgtgcaagc aaaaacaccg
     2401 accggatcca cctctatacc aaggatggaa agccaatgaa ctgtaatttc attcctttgg
     2461 atataaaact agacctttgg gaagacttac cagcaatctt tcaactaaaa cagaatcgct
     2521 ctctgatcct gaggttcgtc cgagagtgga gcggtttgac cgccatgaag cagagagtca
     2581 tcaggaagag tgggcagctg ttccgcagcc cggtgctggc tttggaagag atcacaaagc
     2641 agcaagccaa ggagagtagt accagaagat acatcaccaa agaagatgtt gccacagcgt
     2701 ccatgaataa ggtgaaaaat gaggggggcc acatccgtct catcaccaag gggtccctga
     2761 cccagaaccc ttctacaaaa aaacctgaca gagcccgtgt cccatctccg aatcccggcc
     2821 ccagtggtca cactgctgag ccatccccat cccagggcta ccttcaggct gtggataagg
     2881 aaggaaggcc actctgcctc cgctgccagc atcccacctg ccagcccgag caaggatcca
     2941 aagccagcgc ctgggactca cggttctgct ccctgaactg tcaggaagaa ttctggatcc
     3001 ggtccaacaa cagttacctg agagcccagg tgtttgctac agaacatggc gtgtgtcagc
     3061 tgtgtggcgt gaatgcacag gagctctttc tgcggatgag agatgcccct aaaagtcaga
     3121 ggaagaatct tctcgactct gcctggactg caaagctccc actggagcag ctaaatgaga
     3181 tgctgagaag ccctggagaa ggccacttct ggcaggtgga ccacatcagg ccagtgtatg
     3241 agggaggcgg acagtgctcc ctggacaacc tgcagactct ctgcacagtg tgccacaagg
     3301 agagaactgc ccggcaagcc aaggaaagaa gtcaggtgag acgacgctct ctggcaacaa
     3361 agcacgggtc agacatcact cggtttctgg tgaagaagta aggcgagaca taaacagaag
     3421 caaaaggcct tcagatagga gttgtcacga tttttcttca tgtttatctg gtattttaag
     3481 aatggaaagt gtttaaacaa aagtcaatag tgaaatttag atttttgcta agcactctta
     3541 atgttacata ctgaacggaa actgagggat gatgggaagt ttctgctgtc ttactgactc
     3601 atgaagattg tcaattcaat tatgtttcag caagattttt gttccacttt ccccccttac
     3661 acacctcaat cagtgcattg cgcatagata gtgacagatg taccccgctt gcctgacagt
     3721 tccttcttga ttactgttgg ttctgactgt ataaatggtt ctaatataaa tggaacattc
     3781 cagaacaagc gaggacattt aggagacaag ccatcatcat taaggagttc tgggcagacc
     3841 gtgtacaaga gcctccagat caaggcttgg gtgcatgttt gagatgctgc ctccttgctt
     3901 gatttctggg ccaatcatct ttattgagaa gatgcatttg taaataaact gactataagc
     3961 attcgtggtg tctgtgtaga actcttatgt tctgggtaac cgtgagaaca agtgagaggc
     4021 catcaagtat aatgttgcgc aagcctccgt tctgtatttc tgcttgcttg cttgtttttg
     4081 tttttaatgt ataaaatcag gctaattgtc agaacagcct ttctctcctt gtcctcattt
     4141 cctggtttaa aaatcctggt agtattttgt tttgttctgt tctttaaata aaccttgttt
     4201 tgtttttttt ttaa
//
