LOCUS       XM_006230445            3490 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zinc finger RANBP2-type containing 1
            (Zranb1), transcript variant X1, mRNA.
ACCESSION   XM_006230445
VERSION     XM_006230445.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006230445.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006230445.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3490
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3490
                     /gene="Zranb1"
                     /note="zinc finger RANBP2-type containing 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 34 ESTs, 5 long SRA reads, 11 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 131 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100360606"
                     /db_xref="RGD:2321751"
     CDS             264..2468
                     /gene="Zranb1"
                     /codon_start=1
                     /product="ubiquitin thioesterase ZRANB1 isoform X1"
                     /protein_id="XP_006230507.1"
                     /db_xref="GeneID:100360606"
                     /db_xref="RGD:2321751"
                     /translation="MCKVEVIAWKLKSYFLPDITHFKKYTMSEHGIKWACEYCTYENW
                     PSAIKCTMCRAQRPSGTIITEDPFKSGSSDVGRDWDPSSTEGGSSPLICPDSSARPRV
                     KSSYSMENANKWSCHMCTYLNWPRAIRCTQCLSQRRTRSPTESPQSSGSGSRPVAFSV
                     DPCEEYNDRNKLNTRTQHWTCSVCTYENWAKAKKCVVCDHPRPNNIEAIELAETEEAS
                     SIINEQDRARWRGGCSSGNSQRRSPPTTKRDSEVKMDFQRIELAGAVGTKEELEVDFK
                     KLKQIKNRMKKTDWLFLNACVGVVEGDLAAIEAYKSSGGDIARQLTADEVRLLNRPSA
                     FDVGYTLVHLAIRFQRQDMLAILLTEVSQQAAKCIPAMVCPELTEQIRREIAASLHQR
                     KGDFACYFLTDLVTFTLPADIEDLPPTVQEKLFDEVLDRDVQKELEEESPIINWSLEL
                     ATRLDSRLYALWNRTAGDCLLDSVLQATWGIYDKDSVLRKALHDSLHDCSHWFYTRWK
                     DWESWYSQSFGLHFSLREEQWQEDWAFILSLASQPGASLEQTHIFVLAHILRRPIIVY
                     GVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWKSPIALGYTRGHFSALVAMENDGYG
                     NRGAGANLNTDDDVTITFLPLVDSERKLLHVHFLSAQELGNEEQQEKLLREWLDCCVT
                     EGGVLVAMQKSSRRRNHPLVTQMVEKWLDRYRQIRPCTSLSDGEEDEDDEDE"
ORIGIN      
        1 gggtgggcgg cggcgccgag ggaggcggag aggggccggg ctcggctcgt cgccgcgggc
       61 cgtgcgggag tcgccgccgc cgccgcggcc gcccggcgcc gcgcgtcaga cggggaggag
      121 gaggagtcgc ggccgccagg aatagctatt cacagtcaga cagaaccact tacacgtttt
      181 gcagtatctt ccgaggaagt cagaatctga gccagcatga agattgaatc ttgtctttgg
      241 tctgatttac ctttattgta accatgtgca aggtggaggt tatagcatgg aaactaaaat
      301 cttacttcct gcctgacata actcacttca agaagtacac aatgtcagaa catgggatta
      361 agtgggcctg tgaatattgt acgtatgaaa actggccgtc tgcaatcaag tgtactatgt
      421 gtcgtgccca gagacccagt ggaacaatta ttacagaaga tccatttaaa agtggttcaa
      481 gtgatgttgg tagagattgg gacccttcca gcactgaagg cggaagtagt cctttgatat
      541 gtccagactc tagtgcaaga ccaagggtta agtcttcata cagcatggag aatgcaaata
      601 agtggtcatg ccacatgtgt acatatttga actggccaag agcaatccga tgtacccagt
      661 gcttatccca acgtaggacc aggagtccca cagaatctcc tcaatcctca ggatctggtt
      721 caagaccagt tgctttttct gttgatcctt gtgaagaata caatgataga aataaactga
      781 atacaaggac ccagcattgg acttgttctg tttgcacata tgaaaactgg gctaaggcta
      841 aaaaatgtgt tgtttgtgat caccccagac ctaataacat tgaagcaata gagttggcag
      901 agactgaaga ggcttcttca ataataaatg agcaagacag agctcgatgg aggggaggct
      961 gcagtagtgg taatagccaa agaagatcac ctccaactac gaaacgggac tctgaagtga
     1021 aaatggattt tcagaggatt gaattggctg gtgctgttgg taccaaggag gaacttgaag
     1081 tggactttaa aaaactaaag cagattaaaa ataggatgaa aaagactgat tggttattcc
     1141 tcaatgcctg tgtgggggtt gtggaaggtg atttagcagc catagaagca tacaagtcat
     1201 caggaggaga catcgcacgc cagctcactg cagatgaagt gcgcttgctg aaccgtcctt
     1261 ctgcttttga tgttggctac actctggtcc acctggccat acgcttccag aggcaggaca
     1321 tgttagcaat actgcttaca gaggtgtctc aacaagcagc aaagtgtatt ccagccatgg
     1381 tgtgccctga actgacagaa caaatccgga gagaaatagc tgcttctctt caccagagaa
     1441 agggggattt tgcttgctat tttctgactg accttgtaac atttacatta ccagcagata
     1501 ttgaagattt gcctccaaca gttcaggaaa aattatttga tgaggtgctt gatagagatg
     1561 ttcaaaaaga gctagaggaa gaatctccaa ttataaactg gtctttggaa ttggctacac
     1621 gtttggacag tagactgtat gcactttgga accggactgc cggagattgt ttacttgact
     1681 cagtactaca agctacctgg ggcatttatg acaaagactc ggtgcttcgg aaagccctgc
     1741 atgacagcct gcatgactgt tcacattggt tttacacacg ctggaaagac tgggagtcgt
     1801 ggtattccca gagctttggt ttacattttt cactgaggga agaacaatgg caagaagact
     1861 gggcatttat actctctcta gctagtcagc ctggagcaag tttggaacag acacacattt
     1921 ttgtacttgc acatattctt agacgaccaa ttatagttta tggagtaaaa tattataaga
     1981 gtttccgagg agaaacatta ggatataccc ggtttcaagg agtttatctg cctttgttgt
     2041 gggaacagag tttttgttgg aaaagtccaa ttgctctggg ctatacaagg ggccacttct
     2101 ctgctttggt tgccatggag aatgatgggt atggcaaccg aggtgctggt gctaatctga
     2161 acactgatga tgatgtcacc atcacatttt tgcctctggt tgacagtgaa aggaagctcc
     2221 ttcatgtgca cttcctttct gctcaggagc taggtaatga ggagcagcaa gagaaactgc
     2281 tcagagagtg gctggactgc tgtgtgactg aagggggcgt tctagtggcc atgcagaaaa
     2341 gctctcggcg gagaaaccac cccttggtta cacaaatggt agaaaaatgg cttgaccgct
     2401 acagacagat ccggccgtgt acatccctgt ctgatggaga ggaagacgag gatgatgagg
     2461 atgaatgaaa caaacatcta aggagaaaaa aagaccaagg catcaggtct gagatggccc
     2521 caaagttagt gtggtatctt aagccgaata tgcagcatgg agcgagccat accctgccgg
     2581 atctgctccc aagttatctt tctgttccgc actcactaga gagaactgag tgaatctgca
     2641 tgaggagatg gagaactttg gttgaactac agtttgtaaa aaaaggaaaa aaaaaaaacc
     2701 ctaattttat tgcagaactt ttttctttcc aattgtaaat ctgtctatga atgtaaacgc
     2761 atgtggttgt ttaagaagtt gtgtactagg aaaagtgcac cagcatcttc atgttaccaa
     2821 gaccattttc ccagcatggg cactcacaaa aagcacatag cagacaaacc attgagatat
     2881 tctcattagc acctgacatc ctgctcccac cgtacaagac ccatatccca ctgtttcaga
     2941 gatttggaaa ctttgtacaa attatccacg gcaagataaa aataaacacg cctttatttt
     3001 attaataatt tagttcctgt tgtgcccaat aaaataaaat aaaaaaaaat caaaccctta
     3061 ggaacaaact gcaagaaaaa ctagcaagtg tttggagtga acttatcata aacattgtct
     3121 gttgtgtttg aagacggttt tagtttctgt tttcaagttt tctgatttgc ccctttcatt
     3181 atttagatat ttatttgttt ggaagagtgc cctgtaaaga gggttcttac tcaactctgg
     3241 gcaggtgcat ttgtgcactt atgccctgaa tggatagata gaaagggagc agctcacttg
     3301 tcactgggtg agttatgtga cagtcacttg tgactcaacc tgttctgttc ccaggtggcc
     3361 atgcagacag tcttcagatt cttcctgtct ttgtcacctc tgctctaagc agatcctgta
     3421 ttaagggcat acctttgctt aggctgattg ggaatacagt tcagtacaga ataaagactt
     3481 ttaaaatgca
//
