LOCUS       XM_039092303            1055 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zona pellucida binding protein (Zpbp),
            transcript variant X4, mRNA.
ACCESSION   XM_039092303
VERSION     XM_039092303.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1055
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1055
                     /gene="Zpbp"
                     /note="zona pellucida binding protein; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 ESTs, and 82% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:498415"
                     /db_xref="RGD:1563985"
     CDS             74..1039
                     /gene="Zpbp"
                     /codon_start=1
                     /product="zona pellucida-binding protein 1 isoform X4"
                     /protein_id="XP_038948231.1"
                     /db_xref="GeneID:498415"
                     /db_xref="RGD:1563985"
                     /translation="MCTQEGSQARTPPADHPSGSGGVSVGPSFRPAVRQLPAAGGRAP
                     GNDLLRRGSAVGGVWMEALAPGPALRGRRRARASGSVLSALSLAAVVLSALLRAPPAV
                     GHLARVPRGFRLTQDTLKIVGSTHFPVSVYVMLHQKSPHVLCVTQRLRNTELVDPSFQ
                     WHGPKGKLVSENTTAQVTSTGSLIFQSFEETMSGVYTCFLEYKPTVEEPIKNLQLKYI
                     VYAYREPRFYYQFTARYHAAPCNSIYNISFEKKLLQILSKLVLDLSCEISLIKSECHR
                     VKMQRAGLQNELFFTFSVASIDTEKGSKPCTDHSCEASKRLSKPF"
ORIGIN      
        1 tggagggttt ccttagtggc gcggtggcct cgaagccaag ggatccccta gggggatcga
       61 cctcttgcct cccatgtgta cccaagaggg gtcccaagct aggacacctc ccgcagatca
      121 cccgagcgga agtggcggcg tgtccgtcgg tccgtccttc cggcccgccg tccgccaact
      181 tccggcggcg ggtgggcgcg cgccaggtaa cgaccttctg cgccgaggct cggccgtcgg
      241 cggcgtgtgg atggaggcct tggccccggg cccggctctg cggggccggc ggcgggccag
      301 ggcctcgggc tccgtgctct cggcgctgtc gctggccgcc gtcgtgctct ccgccttgtt
      361 gcgggcgccc cctgcagttg gacatttggc tcgagtgcca agaggttttc gcttgactca
      421 agatacgctg aaaatagtgg gatcaacaca ttttcctgtg agcgtatatg tcatgcttca
      481 tcaaaagagt ccacatgtgc tatgtgtaac ccagcgactg agaaatactg agttggtaga
      541 cccatcgttc caatggcatg ggccgaaggg aaaacttgtt tcagaaaata ccaccgcaca
      601 agtgacatcc acaggaagcc tcatatttca gagttttgaa gagaccatga gtggggttta
      661 tacatgtttt ctcgagtata aaccaactgt ggaggaacct attaaaaatc ttcaactgaa
      721 atacattgtt tatgcttatc gtgaacctcg tttttattac caattcacag cccgatacca
      781 tgcagctccc tgcaatagta tctataacat ttcttttgag aagaaacttc ttcagatttt
      841 aagtaaactg gttcttgacc tttcctgtga aatttccttg attaagtctg aatgccatcg
      901 tgttaaaatg caaagagctg gtttgcaaaa cgaattattc ttcacatttt cagttgcatc
      961 tatagacact gaaaaaggat ccaagccatg tacagaccat agttgtgaag cttccaaaag
     1021 attatctaag ccattctaac ttgagtgaaa tgaag
//
