LOCUS       NM_001109537            1054 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus zinc ribbon domain containing 2 (Znrd2), mRNA.
ACCESSION   NM_001109537 XM_001073780
VERSION     NM_001109537.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1054)
  AUTHORS   Suzuki,H., Fukunishi,Y., Kagawa,I., Saito,R., Oda,H., Endo,T.,
            Kondo,S., Bono,H., Okazaki,Y. and Hayashizaki,Y.
  TITLE     Protein-protein interaction panel using mouse full-length cDNAs
  JOURNAL   Genome Res 11 (10), 1758-1765 (2001)
   PUBMED   11591653
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Oct 23, 2007 this sequence version replaced NM_001109537.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ123618.1, FQ086830.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840129 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-116               JAXUCZ010000001.1  212448678-212448793 c
            117-268             JAXUCZ010000001.1  212448445-212448596 c
            269-353             JAXUCZ010000001.1  212448242-212448326 c
            354-1054            JAXUCZ010000001.1  212447010-212447710 c
FEATURES             Location/Qualifiers
     source          1..1054
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q43"
     gene            1..1054
                     /gene="Znrd2"
                     /gene_synonym="Sssca1"
                     /note="zinc ribbon domain containing 2"
                     /db_xref="GeneID:689397"
                     /db_xref="RGD:1593467"
     exon            1..116
                     /gene="Znrd2"
                     /gene_synonym="Sssca1"
                     /inference="alignment:Splign:2.1.0"
     CDS             98..697
                     /gene="Znrd2"
                     /gene_synonym="Sssca1"
                     /note="Sjogren's syndrome/scleroderma autoantigen 1
                     homolog; Sjogren syndrome/scleroderma autoantigen 1
                     homolog; Sjoegren syndrome/scleroderma autoantigen 1"
                     /codon_start=1
                     /product="protein ZNRD2"
                     /protein_id="NP_001103007.1"
                     /db_xref="GeneID:689397"
                     /db_xref="RGD:1593467"
                     /translation="MALNGADVDDFTWEPPTEAETKVLQARRERQDRISRLMGDYLLR
                     GYRMLGDTCADCGTILLQDKQRKIYCVACQELDSDVDKDNPALNAQAALSQAREHQLA
                     STTEPASSSRPPSQPPVPRPEHCEGAAAGLKAAQGPPLPAAPPNADVVASTQTALLQK
                     LTWASVELGSSASLETSIQLCGLIRACAEALGSLKQLEH"
     exon            117..268
                     /gene="Znrd2"
                     /gene_synonym="Sssca1"
                     /inference="alignment:Splign:2.1.0"
     exon            269..353
                     /gene="Znrd2"
                     /gene_synonym="Sssca1"
                     /inference="alignment:Splign:2.1.0"
     exon            354..1054
                     /gene="Znrd2"
                     /gene_synonym="Sssca1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ttccgccttc agtttgctac atgagggagg cggagccgca gtgggggcgc gccttatttg
       61 catcatttcc ggtgagccca gcagtgacca cggcaacatg gccttgaacg gtgcagatgt
      121 cgatgatttc acctgggagc ctccgactga agctgagacg aaggtgctgc aggcgcgacg
      181 ggagcggcag gatcgcatct ctcgtctcat gggcgactac ctgctccgtg gttaccgcat
      241 gctaggcgac acgtgcgcgg actgcgggac gatcctcctc caagataaac agcggaaaat
      301 ctactgcgtg gcttgtcagg agctcgactc agacgtggat aaagataacc cggctctgaa
      361 tgcacaggca gccctctctc aagctcggga acaccagctg gcctctacta cagagcctgc
      421 ctccagctct cggcccccat cccagccacc agtaccccgt ccagagcact gtgagggagc
      481 tgcagcaggg ctcaaggcag cccaggggcc tcctcttcct gctgcacctc caaatgcaga
      541 cgtggtggct tccacacaga cagccctcct acagaagcta acctgggcgt cagtcgagct
      601 gggctctagc gcttccttgg agactagtat ccaactttgt gggcttatca gggcttgtgc
      661 tgaggccctg ggcagcctga agcagctgga gcactgaggc ctctaccctc acccctgttc
      721 cccctgagaa aaaccctcta gaaaaacagc ttttcctccg tgtggtctgt tcctttcttg
      781 cctctgagtg tgcatgcaag cccagctctg ctcgacgttt tttcttattt ttggtatctc
      841 acctttccat ggtctttttc tacctgaatg gagaggttct acattcagga caagatgtaa
      901 atgataggga taaatgacac cttattttaa ggagtgacct cagtcccctc aaaagttggg
      961 tcactatcat tgtctctgat cctatacccc cttcatccac cttttggacc tgattgccat
     1021 ttgaagttta gtccccttgg tggtttcctt tcct
//
