LOCUS       NM_001106203            1586 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus zinc finger, HIT-type containing 6 (Znhit6),
            mRNA.
ACCESSION   NM_001106203 XM_001079278 XM_217694
VERSION     NM_001106203.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1586)
  AUTHORS   Armour SM, Bennett EJ, Braun CR, Zhang XY, McMahon SB, Gygi SP,
            Harper JW and Sinclair DA.
  TITLE     A high-confidence interaction map identifies SIRT1 as a mediator of
            acetylation of USP22 and the SAGA coactivator complex
  JOURNAL   Mol Cell Biol 33 (8), 1487-1502 (2013)
   PUBMED   23382074
REFERENCE   2  (bases 1 to 1586)
  AUTHORS   Gonzales PA, Pisitkun T, Hoffert JD, Tchapyjnikov D, Star RA, Kleta
            R, Wang NS and Knepper MA.
  TITLE     Large-scale proteomics and phosphoproteomics of urinary exosomes
  JOURNAL   J Am Soc Nephrol 20 (2), 363-379 (2009)
   PUBMED   19056867
REFERENCE   3  (bases 1 to 1586)
  AUTHORS   McKeegan KS, Debieux CM, Boulon S, Bertrand E and Watkins NJ.
  TITLE     A dynamic scaffold of pre-snoRNP factors facilitates human box C/D
            snoRNP assembly
  JOURNAL   Mol Cell Biol 27 (19), 6782-6793 (2007)
   PUBMED   17636026
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC161957.1.
            
            On Apr 6, 2008 this sequence version replaced NM_001106203.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC161957.1, SRR8487226.70364.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1586
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q44"
     gene            1..1586
                     /gene="Znhit6"
                     /gene_synonym="RGD1308723"
                     /note="zinc finger, HIT-type containing 6"
                     /db_xref="GeneID:292160"
                     /db_xref="RGD:1308723"
     exon            1..662
                     /gene="Znhit6"
                     /gene_synonym="RGD1308723"
                     /inference="alignment:Splign:2.1.0"
     CDS             34..1419
                     /gene="Znhit6"
                     /gene_synonym="RGD1308723"
                     /note="zinc finger, HIT type 6"
                     /codon_start=1
                     /product="box C/D snoRNA protein 1"
                     /protein_id="NP_001099673.1"
                     /db_xref="GeneID:292160"
                     /db_xref="RGD:1308723"
                     /translation="MEFAAEKEGTPGGGPQRVAEGARPRPAAGGEGAGDLGGSPEADD
                     GEERNGLTGIKTTEDAEEIKMDLAVVKQEVVDWSDLDGDISDSHWVKQEVEGGPEVKA
                     EKDVLEVKQEADSSLVVKEEEVDEPEVKEEKVKVKEEVTDWEEAKEEDLNVKQELFVG
                     QNVKEEQVMDRVPVKEEDCFKREVTEDTKVKEEPQMNPRVGCKRKLAMSRCETCGTEE
                     AKYRCPRCMRYSCSLPCVKRHKAELMCSGVRDKTAYVSLQRFTEMNLLSDYRFLEDVA
                     RTADRVSRDIFLTRPKRKKYLLFLKNRARKQGVYLRLLPSGFSKRRENSTVFDHRNQQ
                     FCWHVKLQFPQSQAEYVEKRVPDDKTINEILKPYIDPEKSDPVIRQRLKAYTQSQTGV
                     QILMRVENMQQNLIRYYELDPSKSLVNNLRNKVIIEYPTLHVVLKGCSNDMQLLHQVK
                     SESAQKLGNGD"
     exon            663..728
                     /gene="Znhit6"
                     /gene_synonym="RGD1308723"
                     /inference="alignment:Splign:2.1.0"
     exon            729..835
                     /gene="Znhit6"
                     /gene_synonym="RGD1308723"
                     /inference="alignment:Splign:2.1.0"
     exon            836..921
                     /gene="Znhit6"
                     /gene_synonym="RGD1308723"
                     /inference="alignment:Splign:2.1.0"
     exon            922..1025
                     /gene="Znhit6"
                     /gene_synonym="RGD1308723"
                     /inference="alignment:Splign:2.1.0"
     exon            1026..1094
                     /gene="Znhit6"
                     /gene_synonym="RGD1308723"
                     /inference="alignment:Splign:2.1.0"
     exon            1095..1175
                     /gene="Znhit6"
                     /gene_synonym="RGD1308723"
                     /inference="alignment:Splign:2.1.0"
     exon            1176..1253
                     /gene="Znhit6"
                     /gene_synonym="RGD1308723"
                     /inference="alignment:Splign:2.1.0"
     exon            1254..1378
                     /gene="Znhit6"
                     /gene_synonym="RGD1308723"
                     /inference="alignment:Splign:2.1.0"
     exon            1379..1562
                     /gene="Znhit6"
                     /gene_synonym="RGD1308723"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggagtggcag cttcggccta ggctcgtgag ctgatggagt ttgcagctga gaaagaaggg
       61 actccgggag gaggtcccca gagggtagct gagggggcgc ggccgaggcc tgcggctggt
      121 ggggagggag ccggggactt aggtgggagc cccgaagctg acgatggaga ggagaggaac
      181 ggactgacag gaattaagac cacagaggat gcggaggaga taaagatgga cttagctgtg
      241 gtgaagcagg aagtagtgga ctggtcggat ttagacggtg atatttcgga tagccactgg
      301 gtaaagcagg aggtggaggg cgggcctgag gtgaaggctg agaaagacgt gttggaggtg
      361 aagcaggagg cggatagtag cctggtggtg aaagaagagg aggtggatga gccagaagta
      421 aaggaagaga aagtgaaggt gaaggaggag gtaacggact gggaagaagc gaaggaggag
      481 gacttgaacg taaaacagga gttgtttgtt ggtcagaacg taaaggagga gcaggtgatg
      541 gatagagtgc ccgtaaaaga agaggattgc ttcaagagag aagtgacgga agacacgaag
      601 gtgaaggaag agccgcagat gaatccccga gtgggctgca agaggaaatt ggccatgtcg
      661 aggtgtgaga cttgtggcac ggaagaagca aagtacagat gtccacgctg catgcggtac
      721 tcctgcagtt tgccctgtgt gaagagacac aaagcagagc tgatgtgcag cggcgtgcgg
      781 gataagactg cctatgtctc tctgcagcgc tttactgaga tgaacctcct gagcgactat
      841 cggtttttgg aagacgtggc gaggacagca gaccgggtgt caagagatat tttcttgaca
      901 agaccaaagc gcaagaaata tctgctcttt ttgaagaatc gtgcccggaa gcaaggtgtt
      961 tacttgaggc tgctacccag tgggttcagc aagaggagag agaactcgac ggtttttgac
     1021 cataggaatc agcagttttg ttggcacgta aagctccagt tccctcagag ccaggcggag
     1081 tatgtagaga aaagagtacc agatgataaa accattaatg aaattctaaa accttacatc
     1141 gatcccgaaa agtctgatcc tgtgattcgt cagagattga aagcctacac acagtcccag
     1201 actggggtcc aaattttaat gagggtcgaa aatatgcaac aaaatttgat aaggtattat
     1261 gaactggatc cttccaaaag tcttgtaaac aacttgagga acaaagtgat cattgagtat
     1321 ccgactctgc atgtggtatt gaaaggctgc agtaatgaca tgcagcttct tcaccaagtg
     1381 aaaagtgagt ctgcccagaa gcttggcaat ggagattaag ccctgtggaa gaaggtggaa
     1441 gtccgtcccc cggggtcaag aagattgtgt atgctggact gcgggcgact gggtctgtca
     1501 ggagctcgga gtctgttgtt tgtctgaaaa gtaattaaat agcattactt ttttggagag
     1561 gaaaaaaaaa aaaaaaaaaa aaaaaa
//
