LOCUS       XM_039087653             905 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zinc finger, HIT-type containing 3
            (Znhit3), transcript variant X2, mRNA.
ACCESSION   XM_039087653
VERSION     XM_039087653.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039087653.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..905
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..905
                     /gene="Znhit3"
                     /gene_synonym="Trip3"
                     /note="zinc finger, HIT-type containing 3; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 16 ESTs, 1 long SRA read, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 49 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:497975"
                     /db_xref="RGD:1598226"
     CDS             16..396
                     /gene="Znhit3"
                     /gene_synonym="Trip3"
                     /codon_start=1
                     /product="zinc finger HIT domain-containing protein 3
                     isoform X2"
                     /protein_id="XP_038943581.1"
                     /db_xref="GeneID:497975"
                     /db_xref="RGD:1598226"
                     /translation="MASLNTARSPVSRSTKCNSEARPVEKSPTVVPVRTEENKGDDSS
                     IADFLNSDEEDDRVSVQSLKNLGKSETLRSLLLNPHLRQLMISLDQGDNKAKLMKACM
                     QEPLFVEFADCCLRIVEPSQNKDS"
ORIGIN      
        1 gtcgtctggg aagtcatggc gtcgctaaat actgctcggt cgcctgtttc cagaagcaca
       61 aagtgcaact ctgaagcacg tcctgttgag aaaagcccaa cagtggttcc cgtaaggact
      121 gaggaaaaca aaggtgacga ctcctctata gctgatttcc tcaacagtga tgaggaagac
      181 gatagagtgt ctgtgcagag tttaaagaat ctaggtaaat cagaaacttt aagaagctta
      241 ctgctcaacc cgcacctgag gcagctgatg attagccttg atcagggcga caacaaggcg
      301 aagctgatga aagcctgcat gcaggagccc ctgttcgtgg agtttgcaga ctgctgttta
      361 agaattgtgg aaccatccca gaacaaagat tcttaaaact ggatatgctg tctgctcaag
      421 ccgcccgccc actgctccga ggaggaggtt ttcaggctgt ggtagcacgt gtgggtcttt
      481 tctatcacag cgctcgctgc agagcctttg tgaagaggaa acttgcagcc cggagagatg
      541 gctcagcagc taaagagcgc tgatgctttt ccagaggacc ccagcaccca cttgactact
      601 taacaactgt aattagctcc agaggattgg acaccctctt ctgacctctg caggtactgt
      661 atgcatgtgg tacacatcat atatacaggg aaactacata cataaagtac ttagagagtt
      721 ggctatttat atttagatgg tgggtctaaa ttttatttct tgtacagttc agagttacat
      781 cataaatacc aagtgtatcc atttgaatcg aaaactgata gtgttaagaa atttaaggtg
      841 tggttctctt gaccctgtat tgttcattgt ccttggtaac attaaataaa tcagtttatt
      901 aaata
//
