LOCUS       NM_001398850             986 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus zinc finger, HIT-type containing 3 (Znhit3),
            mRNA.
ACCESSION   NM_001398850 XM_573169
VERSION     NM_001398850.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 986)
  AUTHORS   Anttonen,A.K., Laari,A., Kousi,M., Yang,Y.J., Jaaskelainen,T.,
            Somer,M., Siintola,E., Jakkula,E., Muona,M., Tegelberg,S.,
            Lonnqvist,T., Pihko,H., Valanne,L., Paetau,A., Lun,M.P.,
            Hastbacka,J., Kopra,O., Joensuu,T., Katsanis,N., Lehtinen,M.K.,
            Palvimo,J.J. and Lehesjoki,A.E.
  TITLE     ZNHIT3 is defective in PEHO syndrome, a severe encephalopathy with
            cerebellar granule neuron loss
  JOURNAL   Brain 140 (5), 1267-1279 (2017)
   PUBMED   28335020
REFERENCE   2  (bases 1 to 986)
  AUTHORS   Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
            Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
            Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Dec 27, 2021 this sequence version replaced XM_573169.8.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ231514.1, DV727624.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN12840109,
                                           SAMN12840110 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-104               JAXUCZ010000010.1  70287778-70287881   c
            105-136             JAXUCZ010000010.1  70287600-70287631   c
            137-211             JAXUCZ010000010.1  70285998-70286072   c
            212-292             JAXUCZ010000010.1  70284994-70285074   c
            293-986             JAXUCZ010000010.1  70279685-70280378   c
FEATURES             Location/Qualifiers
     source          1..986
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q26"
     gene            1..986
                     /gene="Znhit3"
                     /gene_synonym="Trip3"
                     /note="zinc finger, HIT-type containing 3"
                     /db_xref="GeneID:497975"
                     /db_xref="RGD:1598226"
     exon            1..104
                     /gene="Znhit3"
                     /gene_synonym="Trip3"
                     /inference="alignment:Splign:2.1.0"
     CDS             19..474
                     /gene="Znhit3"
                     /gene_synonym="Trip3"
                     /note="zinc finger, HIT type 3; thyroid hormone receptor
                     interactor 3"
                     /codon_start=1
                     /product="zinc finger HIT domain-containing protein 3"
                     /protein_id="NP_001385779.1"
                     /db_xref="GeneID:497975"
                     /db_xref="RGD:1598226"
                     /translation="MASLNSKTAICVICSEKPKYRCPACRVPYCSVACFQKHKEQCNS
                     EARPVEKSPTVVPVRTEENKGDDSSIADFLNSDEEDDRVSVQSLKNLGKSETLRSLLL
                     NPHLRQLMISLDQGDNKAKLMKACMQEPLFVEFADCCLRIVEPSQNKDS"
     exon            105..136
                     /gene="Znhit3"
                     /gene_synonym="Trip3"
                     /inference="alignment:Splign:2.1.0"
     exon            137..211
                     /gene="Znhit3"
                     /gene_synonym="Trip3"
                     /inference="alignment:Splign:2.1.0"
     exon            212..292
                     /gene="Znhit3"
                     /gene_synonym="Trip3"
                     /inference="alignment:Splign:2.1.0"
     exon            293..986
                     /gene="Znhit3"
                     /gene_synonym="Trip3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agagtcgtct gggaagtcat ggcgtcgcta aatagtaaga ctgcgatctg tgtgatctgc
       61 tcggagaagc cgaaataccg ctgcccagct tgccgcgtgc cctactgctc ggtcgcctgt
      121 ttccagaagc acaaagagca gtgcaactct gaagcacgtc ctgttgagaa aagcccaaca
      181 gtggttcccg taaggactga ggaaaacaaa ggtgacgact cctctatagc tgatttcctc
      241 aacagtgatg aggaagacga tagagtgtct gtgcagagtt taaagaatct aggtaaatca
      301 gaaactttaa gaagcttact gctcaacccg cacctgaggc agctgatgat tagccttgat
      361 cagggcgaca acaaggcgaa gctgatgaaa gcctgcatgc aggagcccct gttcgtggag
      421 tttgcagact gctgtttaag aattgtggaa ccatcccaga acaaagattc ttaaaactgg
      481 atatgctgtc tgctcaagcc gcccgcccac tgctccgagg aggaggtttt caggctgtgg
      541 tagcacgtgt gggtcttttc tatcacagcg ctcgctgcag agcctttgtg aagaggaaac
      601 ttgcagcccg gagagatggc tcagcagcta aagagcgctg atgcttttcc agaggacccc
      661 agcacccact tgactactta acaactgtaa ttagctccag aggattggac accctcttct
      721 gacctctgca ggtactgtat gcatgtggta cacatcatat atacagggaa actacataca
      781 taaagtactt agagagttgg ctatttatat ttagatggtg ggtctaaatt ttatttcttg
      841 tacagttcag agttacatca taaataccaa gtgtatccat ttgaatcgaa aactgatagt
      901 gttaagaaat ttaaggtgtg gttctcttga ccctgtattg ttcattgtcc ttggtaacat
      961 taaataaatc agtttattaa atatta
//
