LOCUS       XM_039100840            5791 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zinc finger protein 780B (Znf780b),
            transcript variant X2, mRNA.
ACCESSION   XM_039100840
VERSION     XM_039100840.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100840.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5791
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5791
                     /gene="Znf780b"
                     /note="zinc finger protein 780B; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 5
                     ESTs, 5 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 84 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:100910046"
                     /db_xref="RGD:6500398"
     CDS             209..2215
                     /gene="Znf780b"
                     /codon_start=1
                     /product="zinc finger protein 60 isoform X1"
                     /protein_id="XP_038956768.1"
                     /db_xref="GeneID:100910046"
                     /db_xref="RGD:6500398"
                     /translation="MASSSSQHTVCGSVTFRDVAVDFSQEEWACLDATQKVLYRDTML
                     ETYSHLVSVVGRCISKPHLITLLEQEKEPWMAVKEESDRPSPGVKTCFKAENVSDINV
                     NKQSIKHLSKTFDLKESTFSDGPNYRTLSGLQGCQGDADQKSNNKDGTPPYTCQALAH
                     NVERAYECKECGKAFRLPQQLTRHQKSHSGEKPFKCNECGKAFHLPGLLKYHKTIHTG
                     EKPFECEECGKSFNCVSHLVEHRTIHAGVKPYECNDCGKAFKRHSYLMQHQKIHSGDK
                     PFQCKECGKAFTVLPQLTQHQNTHTSEKFECKQCGKIFSGGFYLVRHQSIHTGEKPFE
                     CNVCGKAFRLQVYLNEHQKTHTDEKPFKCKLCESAFRRKYQLSEHQKIHTNVKPYQCK
                     DCGKFFRRRSNFTEHQSIHTGKKPFECKQCGKVFRLNIHLIRHQSFHSGKRPFECNEC
                     GKGFHFSSQLNYHKTIHTGQTPFECEKCGKSFKRVCSLLEHRVIHAAVKPYECSECGK
                     TFNRRSNLVQHQKIHSGERPFECKECGKGFTVLAQLTRHQTIHTGEKSFECEQCGSAF
                     RLQYQLTQHQRIHNDVKPFECKECGKGFVRGTALRIHERIHTGERPFQCKECGEGFQY
                     HYQFLGHSRTHTGKKPYECNECGKYFARDGDLKVHQRIHTGKKP"
ORIGIN      
        1 tgctgacgta ggtacggcag accgtcaggt gggagtaaga agtcactggt tggcgtaggt
       61 ctccacagag taaggcggag gacagctggc gggtgtgggt gtggacgggt tgtgcctaca
      121 ggacctgtgt gcaccctgcc agtaccttga gaggcctgaa gagggcgtca aatcccctga
      181 agctggaggg gacgaagcct gaagaagaat ggccagctcc agttctcaac acacggtctg
      241 tgggtcagtg acatttaggg atgtggctgt tgacttctct caggaggagt gggcctgcct
      301 ggatgctact cagaaggtct tatacaggga cacgatgttg gagacctaca gccacctcgt
      361 ctcagtggtg gggagatgca tttccaagcc acatctgatc accttactag agcaggagaa
      421 agagccctgg atggctgtga aggaagaatc agacaggccg agcccaggtg tgaagacatg
      481 ttttaaagct gaaaatgttt ctgatataaa cgtaaacaaa cagagcataa agcacttaag
      541 taaaactttt gacctcaaag agtctacttt tagtgatggc cccaactaca ggacactcag
      601 tggactacag ggttgtcaag gagatgctga tcaaaagagt aataacaagg acggaacgcc
      661 cccttacacc tgccaggctc ttgctcacaa tgtagaaaga gcctatgaat gtaaggagtg
      721 tgggaaggcc ttcagacttc cccaacagct tacaagacat cagaagtctc acagtggtga
      781 gaaacctttc aagtgcaatg agtgtggaaa ggcgtttcat cttcctggcc tgctcaagta
      841 ccataaaacc atccatacag gtgaaaaacc ttttgaatgt gaagaatgtg ggaagtcctt
      901 caattgtgtc tcccacctcg ttgaacacag gaccattcat gctggtgtga aaccctatga
      961 gtgtaatgac tgtgggaaag cctttaaacg tcactcatac cttatgcagc atcagaaaat
     1021 tcattctggt gacaaaccct ttcagtgtaa ggagtgtggg aaggccttca ccgttctgcc
     1081 acagctcact caacaccaga acactcatac ttcagagaaa tttgaatgta agcagtgtgg
     1141 gaagatattt agtggtggtt tttaccttgt acgacaccag agcattcaca ctggtgagaa
     1201 gcccttcgaa tgtaatgtat gtgggaaggc ctttaggctt caagtatacc ttaatgagca
     1261 tcagaaaact cacaccgatg agaagccctt caagtgtaag ctctgtgagt cggccttcag
     1321 acgtaagtac cagctcagtg aacatcagaa aattcatacc aatgtgaaac cctatcagtg
     1381 caaggattgt gggaaattct ttcgccggcg ttcgaatttt actgagcatc agagtattca
     1441 caccggaaag aaacccttcg agtgtaagca gtgtgggaag gtctttaggc ttaatataca
     1501 tctcattcgt catcagagtt ttcatagtgg taagagacct tttgaatgca atgaatgtgg
     1561 aaagggtttt catttttcca gccagcttaa ttaccataaa accattcata caggtcagac
     1621 accttttgaa tgtgaaaaat gtgggaagtc cttcaagcgc gtctgcagcc ttttggagca
     1681 tagggttatt catgctgctg tgaaaccgta tgagtgtagt gagtgtggga aaacttttaa
     1741 tcgtcgctca aacctcgtgc aacatcagaa aattcattct ggtgagagac cctttgagtg
     1801 taaggagtgt gggaagggct tcactgtgct ggctcagctc acacgacacc agacaattca
     1861 tactggagag aaatcatttg aatgtgagca gtgtgggtca gccttcagac tccagtacca
     1921 acttactcaa catcagagaa ttcataatga tgtgaaacca tttgagtgca aggaatgtgg
     1981 aaagggcttt gttcgtggta cagctcttag aatccatgaa agaatccata ctggtgagag
     2041 gccctttcag tgtaaggaat gtggagaagg ttttcaatat cattatcaat ttcttggaca
     2101 ttctagaact catactggca agaagcctta tgaatgtaat gaatgtggga agtactttgc
     2161 tcgtgatgga gaccttaaag tacatcaaag aattcacact ggtaagaaac catagactag
     2221 tgttaagaat gtggggaggc ctttaattga aaatcaagct tggtttgaca cgctaaaatt
     2281 catattaata agaagcctta tgatgtaagg tatctggaaa gaccttcagt aattctaagc
     2341 tagctgtatg taaaagaatt catactgata agaaaatgtt aatgtcactg gtggtggaga
     2401 gagaaccacc acaccacagt ttaaagccaa atttgaagta agctttaagt aaatactagc
     2461 caggttatgg actctctggc caggtccagc tttgggtttc cagaaataac catgaatcct
     2521 ctgttgcagg ggcttagaaa ggcaatccca caatgccacg tatttcccac caggtacaag
     2581 caaggccaag catataatct gacttatttc ctgcctatgt acctcctgcc tgcatgtcaa
     2641 atcagcagcc agggtgcatc ctgatatatt tccttctcat gtacttcctc tccaacttgt
     2701 gatcaagcac atctggtgta tttggggcaa acaaatttac taaggagaat gaaaccatgt
     2761 gactggttat tgcccataaa caatagcctc cagcatttca ggaagtattt gatcttgggc
     2821 aaggggctta caggttaaca gcattttgtt tcatgtgtct ttgaggcaca gtaattaaaa
     2881 cttgaaatgt aactttggct ctcagaaaac cctgtgaagg taagaaatgt ggaaaaatat
     2941 gtagatttag tttagtcttt actacacatt ggagaattca tactggtatg aaacccttat
     3001 cactgtaaat agtgtggaaa gacctttaat tagacctcag gtcttcttca taataaaata
     3061 atccatgctg gtgtcaaaca ctatgactgc aatggaatgt ggcaacattt atagaattag
     3121 ctcagttctc aaagctcatc agaaagtata tatatatata tatatatata tatatatata
     3181 tttgaaaaaa atatatatat atttgaaacc ccatgtattt aaagactgtg gaaaagcctt
     3241 tattgtaaat agtcagctta cacaagatca gaaaatccat gctcatcaga agtcctatgc
     3301 atgtaagaaa tgtggacaaa cctttggaaa ttttactgat catcagagaa ctcataagtc
     3361 aagattgtga cttaaaagaa tgtaagaagg actttaattt gccctagatt tcggtcaaca
     3421 tctgaatatt tatatattct tgatgccaag aaaccatttg agaattgaga gtgcagggag
     3481 tctattgttc agagaagata ctccgtcaac agtgttctta atttactctt atcgtgttag
     3541 ttctacaaac ttaaccaaac gctactcagt caatttagaa agagcagtta ttagaactag
     3601 aactatctgt ggtatcttct ttgtcaccat taacatccca gtgttcctga gatggtagac
     3661 tggatgttta tttctgcata gtttgttaat ggtaagcaca gaactagcca aacttatgga
     3721 aacagggttg tgatagatta aaatccttga gactatttgg gtcatgttct gtaaagtagc
     3781 gttacagtat tcttgctttc attggcatta tgcaactgat atgaaaggca agtggtattg
     3841 cagatagttt tttaaaaagc ctcatgtagt cctccaatat taaattccga atacttcctt
     3901 atggataaaa tctaatggat gaaaacatac atgaatacat cttcattcct aatccattcc
     3961 ttaagctttt gtgcagagat ttcaaaaaca cacctgttgg cgaataagta ctctttaaag
     4021 gagctaaaca aatgtaactt tcaaaaggta aagtcctgta atttatgctt tctgccaaaa
     4081 cattaagata aaatacatct gtgacagggc tagacagtac ggtctcttcc atctcatatg
     4141 tttgtggaaa actctggtct atgaaccaga agtcaagatg cccttgctaa tttatcttgg
     4201 cttttgtcaa actgcctgca tgtgcaaacc tctcctttca gttagcctct tgtcttggct
     4261 tctgtcaaac agcctgctta tgtaaaagct tccctgcggc tgttgagcaa aataacagaa
     4321 tgtaggggtt ttttgtttgt ttgtttgttt gtttttgctt ttaatagccc cttactctaa
     4381 atacttggga gctatactta gattgcaaat acctgagtat agtcccagac aactggaata
     4441 aagtctttca gttggttaaa actgtgtctg agtgatcttc tctggtagac tcacaatgaa
     4501 acattaacaa aaatagccaa aattgaaact acctataaaa atacatgtga gaaatttttc
     4561 atacatagtt ggaagaatca aaagtacacg tatgtgtcct cacctggact caaaattgat
     4621 aacaatttac taggttgata tatatatgat atcatatata tatatatgag atggctcagc
     4681 agttaataat actgtctatt ttcccagaag acaaggagat aaggaaataa tccagaattt
     4741 tacaactttc agaaatattt cattggcttc caaactgtca tttttacaaa tgtatatatt
     4801 cttcaggtgg ggtggtgcat gcctttaatt ccagcacttt ggagatagag gaaggcagct
     4861 ctttgagttt aaggccagcc tggtttatag agtgagttcc aggacagcca gggctacatg
     4921 gagaagccat ctctataagc aaagcaaaaa ctaaaacaaa tgtatatatc ttaaggagaa
     4981 gccagtgtgg atatagattt ggccatttct attcaaacca caagtgtctt gcctacatgt
     5041 gcgctttctt tgtgcctggt gcctgagggg tctagaagag ggtaccagat atccctggct
     5101 gtagtccagc tagtccaaca atggctagtt gtggatggaa agttaagaat ctagtacttg
     5161 ctcagtccca taaggctgga tgtctcagct ggtcttcagt atacgctgga atgtcaaaga
     5221 catagtgtcc gatgctggtt taacacggat gtggcagcaa ggtgaaggca agcaggcaaa
     5281 gagcagaagc ttcctttttc tctgtccttg tatagatttc cagcagaagc tatgacccag
     5341 attaaaggtg tgccttctac ctcaagatct gggataaaag tgtgtgtctt tccccttcga
     5401 tatcctaatt aaagctgtga gtctttcagc ctcaagatcc agatcaaatg tgtttgtctt
     5461 ccaacctcaa agatttggac tagaagtaca ttcacttaga tcaaaatcaa gcagaaaatc
     5521 tctcacaagt gtgcccttga tttctgtgtt gtagttcatt actgatatag tcaagttgac
     5581 aaccatgaat cacaccactg aaaataagtt aactggaagg aagatgccta tcaccttgta
     5641 agatactgta tggtcatgct tctgtctcat agaagcacag gtgaacatgt gtgcatgttt
     5701 caggatgctg agtggtgaag tgtgtgcaac gttgaaagag atggatgtgt gtttcttcaa
     5761 tgtcagtaac tgaataaaca ataaatttac a
//
