LOCUS       XP_038956768             668 aa            linear   ROD 22-FEB-2024
DEFINITION  zinc finger protein 60 isoform X1 [Rattus norvegicus].
ACCESSION   XP_038956768
VERSION     XP_038956768.1
DBLINK      BioProject: PRJNA1074393
DBSOURCE    REFSEQ: accession XM_039100840.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086019) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Aug 2, 2024 this sequence was replaced by
            NP_001419672.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Rattus norvegicus"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     Protein         1..668
                     /product="zinc finger protein 60 isoform X1"
                     /calculated_mol_wt=76746
     Region          14..75
                     /region_name="KRAB"
                     /note="krueppel associated box; smart00349"
                     /db_xref="CDD:214630"
     Region          <168..323
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          168..188
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(173,175,177,179..180,183..184,187,201,203,207..208,
                     211..212,215,229,231,233,235..236,239..240,243)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          196..216
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          224..244
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          248..653
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          252..272
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          280..300
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          307..327
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(312,314,316,318..319,322..323,326,340,342,346..347,
                     350..351,354,368,370,372,374..375,378..379,382)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          335..355
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          363..383
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          391..411
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          419..439
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          447..467
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          475..495
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          503..523
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(508,510,512,514..515,518..519,522,536,538,542..543,
                     546..547,550,564,566,568,570..571,574..575,578)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          531..551
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          559..579
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          587..607
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(592,594,596,598..599,602..603,606,620,622,626..627,
                     630..631,634,648,650,652,654..655,658..659,662)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          615..635
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          643..663
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..668
                     /gene="Znf780b"
                     /coded_by="XM_039100840.2:195..2201"
                     /db_xref="GeneID:100910046"
                     /db_xref="RGD:6500398"
ORIGIN      
        1 massssqhtv cgsvtfrdva vdfsqeewac ldatqkvlyr dtmletyshl vsvvgrcisk
       61 phlitlleqe kepwmavkee sdrpspgvkt cfkaenvsdi nvnkqsikhl sktfdlkest
      121 fsdgpnyrtl sglqgcqgda dqksnnkdgt ppytcqalah nverayecke cgkafrlpqq
      181 ltrhqkshsg ekpfkcnecg kafhlpgllk yhktihtgek pfeceecgks fncvshlveh
      241 rtihagvkpy ecndcgkafk rhsylmqhqk ihsgdkpfqc kecgkaftvl pqltqhqnth
      301 tsekfeckqc gkifsggfyl vrhqsihtge kpfecnvcgk afrlqvylne hqkthtdekp
      361 fkcklcesaf rrkyqlsehq kihtnvkpyq ckdcgkffrr rsnftehqsi htgkkpfeck
      421 qcgkvfrlni hlirhqsfhs gkrpfecnec gkgfhfssql nyhktihtgq tpfecekcgk
      481 sfkrvcslle hrvihaavkp yecsecgktf nrrsnlvqhq kihsgerpfe ckecgkgftv
      541 laqltrhqti htgeksfece qcgsafrlqy qltqhqrihn dvkpfeckec gkgfvrgtal
      601 riherihtge rpfqckecge gfqyhyqflg hsrthtgkkp yecnecgkyf ardgdlkvhq
      661 rihtgkkp
//
