LOCUS       XM_039087183            6942 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zinc finger protein 454 (Znf454),
            transcript variant X1, mRNA.
ACCESSION   XM_039087183
VERSION     XM_039087183.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039087183.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6942
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6942
                     /gene="Znf454"
                     /note="zinc finger protein 454; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 2 ESTs, 27 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     47 samples with support for all annotated introns"
                     /db_xref="GeneID:102555919"
                     /db_xref="RGD:7529496"
     CDS             3276..4841
                     /gene="Znf454"
                     /codon_start=1
                     /product="zinc finger protein 454 isoform X1"
                     /protein_id="XP_038943111.1"
                     /db_xref="GeneID:102555919"
                     /db_xref="RGD:7529496"
                     /translation="MAVSYFPALVQDLVTFKEVAVLFTQEEWGWLSSAQRDLYQDVML
                     ENYSNLVSLAGLLESLPDMFFPLEEVEERVSEEAPKGFVLGGMTMAVSKKFLQADIPE
                     KGSDQWITEQRATRETHWVCAEEGQEVKPKQAVLTHQDTPSKLSEQKVGESDKGCTAS
                     SSPIRSQRSQASQRAFECNRCGKVFSKGSILKKHQKLHIEKLNPSQKTLVKEKRYECR
                     ECGKTFHQSTHLIHHQRVHTGEKPYECKDCGKAFSVSSSLTYHQKIHTGEKPFECNIC
                     GKAFIRNIHLSHHHRIHTGEKPFQCNVCDKAFVCRAHLTKHQNIHSGKKPYKCSECGK
                     AFGQSTSFLQHQRIHTGEKPFECNECGKAFRVNSSLTEHQRIHTGEKPYQCIECGKAF
                     RDNSSFARHRKMHTGEKPYRCGLCEKAFRDQSALAQHQRTHTGEKPYTCNICEKAFSD
                     HSALTQHKRVHTREKPYKCKTCGKAFFRSTHLTQHQRIHTGEKPYKCNMCGKAFNQTA
                     NLIQHQRHHIGEW"
ORIGIN      
        1 caacagcaac aacaacagca acaacaacaa cagcaacaac aacaacaaca gcaacagcaa
       61 caacagcaac aacaacaaca gcaacaacaa cagcaacaac aacaacaatg gcaacaacaa
      121 accagtacat ctaggaaatt ctgggcgttc agttgtttga gagcagtcaa agtgacagga
      181 aatgtagcta aaagatgttg cgcctactgc aaaagtcaat ttgctaggct ctgcaacacc
      241 acgctaggaa ttaggaagaa gtagccagtc tccgagaagt cagattggtc cttcataaac
      301 tttaatttgc atatccataa ctcttaaggg cgaacagacg agaaaacagt tttggtgtct
      361 cccaacccct ttcttcctta gactggatcc taatgaaaga aattccacga gggaaatggg
      421 tgtggtctgc tgactgctgg gaacagtcag taaagctcat aatggaatcc tagctagagc
      481 catgtgagga caaaggtgtc cctgcagttt gttttaatct ttaagacggt cttcatccag
      541 gctcttgttg aactcaatgc tcgcacgcgc acacacatac acatgcacgc acacacacac
      601 atacacatac acacacatac atacacacac acacacacac acacacacac acacacacac
      661 acacacagaa ggctgtccat atgatattca ttccctcatg acttttcaca agctctggca
      721 gaaacgaatc agataaatgg aggtttcgca acttccatca gaaacgttgg aaggcatgtc
      781 tcctcctagc tagcctaggc ccacagtggg tgcctttgca ccttccttca ccaggagtga
      841 cagtcctggt cccacctgct tactggggcc ttgctcaaga tacttcatag tcagtgactg
      901 ttttcttcct tcctaatggt gtaaacctta gtgattttgg ttgatttaga tagtaaagcg
      961 cttaggacac tgcctaacac ggctactgct aaatgctatt taattgtcaa agatctggaa
     1021 actgatgtct aaatttacta gtttgccatc cagaacccac agctcctacg agaaccatta
     1081 gactccgaaa gcaaatgtct tagagtataa acaattggat ttactctaac tcaagagctg
     1141 ccatgaatga gccatggaga gcttttgtta attataaaag gtttagtcct tagtttcctt
     1201 gttcacaact aacttttata acttaaacta acccactcat aacttaaact aacctatgct
     1261 ctgccatgtg gctggttacc tctcctcagt tttatatgtc tgtcttcctc cttgtctgga
     1321 tggagaacct tccctctccc aagactgact gaagaatctc tcctctggat ctcattgaca
     1381 aacctcactc ctcaggctct ttcccagagt tcctaactct gcctgaagtt ccacctatca
     1441 tatccttctt tgctataggc tgtccaactc tgtattaaac caaccagaag gtgttggagg
     1501 atgtttacaa aacaccaaga caggtgaggt ttaacaatac aaagtctgcc ctgtacacag
     1561 atctctgctg gtacagaaat tgccatttga ataatacaaa ggcaatattc atgcagtgca
     1621 caaaaaggtc accccaacac tacaagaagg tctagaggga gggcatgcca cataatgttg
     1681 cagaaagctc caggtccttc tccccctcaa ccatcccgtg gtctgggttt ttagtttatt
     1741 ttgctgttgt ctggggtcag atttcattgt taggaatcaa gccagcaggt gctgtcactg
     1801 tcctgtggcc attcctggct ctcaccctga attggtcctg cccagaacag accagagtgt
     1861 gtatagaaac attcgtctgt ccactttgag cttccattgc tttcctatca cacacacaaa
     1921 gtgaatccac attcctacca tggcagttag aacctcagag tcacacacac tgtcatcttg
     1981 agccctcttt tctttccttg tccctggtga agatgctggt cttgttaagc atcaaatacc
     2041 cgaagctaac tcctttgtgg gcagctcttc caggacagtc aaatctcccc ttctccctct
     2101 gtaaccccct aacacagctc tgctatgcag ccattcattc cctgctgaac attttctgtt
     2161 tgatggacca ccttctctag acacaccaac cctccagtgc agggttcact ctgtttctct
     2221 gccctctgca aactgcatgg acctataatc accctaagtg agagaatggc atctttaaag
     2281 cccaggatag agttactcac attgcatcct aaagggtggc ccgcaatccc agaagtgtca
     2341 atctcaaatc gtattttttt gacttgaatt tgtttcactt ttttttttaa ccaacaacaa
     2401 aggtactcca tgaatagtta ttacatattc aaaggcaact agatatcttc agggagaggt
     2461 tctggtatat ccctcaatac tcacaggccc cggaaaaata cagtcatcag aaatacatcc
     2521 aaacttctct atataccatc ccgtgcaacc agagagactt gtttactttg tagagacctc
     2581 cagagccttt gccctctttc cctgcaaccc tgctacccca accctcactg ctctcggact
     2641 accacacctc ccctgtccag ctccaacaga ggccgtagca cctgtggaga gagtgatcct
     2701 gactgtcttt ccagctgttt ctctgccgct aggtgctgtt acgaagttcc tggacgttcc
     2761 ctggctttgc ttgcagagcc cagggtctag ttcccttggt aacagcatcc tggaccttat
     2821 ttcacagcgg gtctccacag gactagacca cttgtctgcc cagggagtgc accgcatcgg
     2881 cttctgggaa ttgtagtttc gcccacaaag ccactcggca caggcgcact taatcacttt
     2941 ttgctcctcg gctccctctg agaaaaggag tccaaaaacc caagggctgc agcaaggaga
     3001 tttgtgggaa tttggcttcc gggcccctgg acgaacgcgc aggcgcggct ccgcgtccag
     3061 cagcaggatc ctgctcattg tgtcttgtct gcactgtcga ggctatgctg tgtcgcctcc
     3121 gcagtggaca atcttctaag ggaagtccca cagtgacctg cagtatccag agagcgaagg
     3181 tatgcagatg cttctagcca gaggaatccc acagctgtaa agctcctcgc ctgtctcctc
     3241 ctgctcagtg ttcctcagct caccaaagaa aaggaatggc tgtcagctac ttcccagccc
     3301 tggtccagga cttggtgacc ttcaaggagg tggccgtgct cttcacccag gaggagtggg
     3361 ggtggctgag ctctgcccag agggacttgt atcaggatgt gatgctagag aactacagta
     3421 acctggtctc gctggcaggt ctcttggaat ccctaccaga catgttcttt cccctggaag
     3481 aagtggaaga acgtgtgtca gaggaagctc ccaagggctt tgttctggga gggatgacta
     3541 tggccgtgag taagaaattc cttcaggcag atatccctga gaaaggatca gatcaatgga
     3601 ttacggagca gagagccacc agagagactc actgggtgtg tgctgaggaa ggtcaggagg
     3661 tcaagccgaa gcaagcagtc ctcacccatc aggacactcc atcaaagctg agtgagcaga
     3721 aagttgggga gtctgacaag ggctgcacag cgagctcctc acccattcga agtcagagat
     3781 ctcaagcaag ccaaagagct ttcgaatgca acagatgcgg aaaagtcttt tctaagggtt
     3841 ccatccttaa gaaacatcag aaacttcata ttgaaaaact caacccaagt cagaaaacac
     3901 tggtgaaaga aaaacggtat gaatgcagag aatgtgggaa aaccttccac cagagtacac
     3961 acctcatcca tcaccaaaga gttcacactg gtgagaaacc gtatgagtgt aaggactgcg
     4021 gcaaggcctt ctcagtgagc tcttcgctta cctaccacca gaaaatccac accggagaaa
     4081 agcctttcga atgtaatatt tgtggaaagg cctttatccg gaacatacat ctctcccacc
     4141 atcatagaat acataccgga gagaaacctt tccagtgcaa cgtttgtgac aaagcttttg
     4201 tttgcagagc acatcttacc aaacaccaga acatccacag tggcaagaag ccctataaat
     4261 gtagtgagtg tgggaaagcc ttcggtcaga gtacaagttt cctgcagcat cagaggatcc
     4321 acactggaga gaagcccttt gaatgcaatg agtgtggcaa ggccttcagg gtgaactctt
     4381 cccttactga gcaccagaga atccacactg gggagaaacc gtatcaatgt attgaatgtg
     4441 gcaaagcatt cagggataat tcatcctttg ctcgacatcg gaaaatgcac accggagaga
     4501 agccttacag atgtggtttg tgtgagaaag ctttcaggga ccagtcagcc ctagcacagc
     4561 accagagaac tcataccggg gaaaagcctt acacgtgtaa catatgtgag aaagccttca
     4621 gtgaccattc agcccttacc caacataaga gagttcacac gagagaaaaa ccgtacaaat
     4681 gtaaaacctg tgggaaagct tttttccgaa gcacacacct cactcaacac cagaggattc
     4741 acacggggga gaaaccttac aaatgtaaca tgtgcgggaa agccttcaac cagactgcaa
     4801 acctcattca gcatcagagg catcacattg gagaatggtg ataggaaggc agttcataag
     4861 tgctgtggga atgatgtcat tagttattga atagaagaga ggccacaatc acaatggagt
     4921 cttttatcag gatggttgta tttactggca gtcggtttca taatgcctcg ggtcttgaga
     4981 atcttagtgg tgaacgcacc ttgctcttca gtctgcctcg tttagatagc agtgcctttt
     5041 tattgccctg aattactgac tattagaacc aacatgaaac ttcattaaaa gcataaatgt
     5101 cagcttgtca aattcgcaac tggttaagat aactacaggg gctggggatg tagctcagta
     5161 gtagagcgct tgcctagcaa gcgcaaggcc ctgggttcgg tccccagctc cggaaaaaaa
     5221 aaaaaaagat aactacaaaa ttatgaaact taagattgag aagcaaagga acaaaatact
     5281 aaagggaatg gtctatacgc atcttctcac gtgagcaagt agcctgctgg ctttaataga
     5341 accctttgtc tcccctcatc catatccctg atgcctggta tacagcaggt gccatcagta
     5401 agtcaagcac cagccaagaa tcagtgactt tgtgcctctc aggctcctgc ttgtttcagc
     5461 taccctctgt caaatctcct gggtctgcct gcccactttc ttcttaggaa gttctaggaa
     5521 ggttcatttg aattgcgtga ccatcttctg acttagtttc aacttttacc accattttcc
     5581 ttgttatcac caccctggac ctcattcata gtgcaaatca gaagtgcaaa atcagcagga
     5641 tccatgagtc tagattttgt acccaaatcc agctttcaga actcaaggtc tctttctgga
     5701 ggcaaaagtc atcaaaggta ctgtgccacc cagttgtacc tacctcggct aactatgatc
     5761 ctggtatgat tcctaggtaa gggctttcca tgatagccat taccctctcg ccagtccaaa
     5821 ccatagtaaa gtcacagtgt ccacaggagt aagaggcctg ctcaatttca agcgggatgt
     5881 ggttgtggct cctatccact tccacttttg tgactcgcca tctcctccat atacagttga
     5941 cctgagatga gggatctaag cccagttctc agatgctctg acccatttcc tgttcctggt
     6001 cagtgctctg tggctactgc cttagagtgt atctgccact cccgtattat tgaactgtgt
     6061 gtccgggtct tcacctagct tttcattgga tttctgaagg ttttaattct gtgttctata
     6121 aaaagcacta tgctaataat ttctgcctat atatttgaaa gttcctttct tttcgtccat
     6181 ggggcatcct accacttaaa gtctctactg ttctgacagg ggtgaacaac atatcgaaca
     6241 gttccatagg tcccgagatg aaggagggta ccgttgacat tctctgacta tggccagacc
     6301 caggcccaaa agactgtgac aagctagacc tgcaggcagg tcttctgtca ttgatccctc
     6361 aatacctttt gtagaaatca cattcacaac caggcatctt catgtatgca gtccctgtag
     6421 acgctctctt ctacaccaca aggaacagaa ggagtccgta ccagtgcgag gcggtacgtg
     6481 tttcacagtg agaatggaag aaccaataaa atcattccag gaggctggtt cctggttcct
     6541 ggtttgtaga agtaccgtta atgaaatcag atgctcttgt cccctgaagt taaagaaaag
     6601 gacattctgt attgtgtcac actctgttgg cccacacctg gaagttttgg gcaccttcaa
     6661 agcctaaatt gagttttcag caaacaaagc ccacctgtgc aggcaagcct cccctgttaa
     6721 gggactgaaa actcacgtct tcactcacgc atgtaaaggg tatttcaaga ggttacctgg
     6781 cacttccggg gtggtgtact cacatccatt gcagtctcac ctggctagac ctgcagagtg
     6841 cattaacctg ccgcgacctg cttcctgtta ctgacgtctc ttttctgtac tatccatacg
     6901 acctaccctg tcctttctca gataaaccct tcttggtctt ta
//
