LOCUS       XM_003749532            3368 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zinc finger protein 408 (Znf408),
            mRNA.
ACCESSION   XM_003749532
VERSION     XM_003749532.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_003749532.5.
            
            On Jan 21, 2021 this sequence version replaced XM_003749532.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 3 indels
            internal stop codons :: corrected 1 genomic stop codons
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-134               JACYVU010000118.1  1488257-1488390     c
            135-316             JACYVU010000118.1  1487803-1487984     c
            317-317             "N"                1-1
            318-400             JACYVU010000118.1  1487720-1487802     c
            401-462             JACYVU010000118.1  1486795-1486856     c
            463-719             JACYVU010000118.1  1486381-1486637     c
            720-1006            JACYVU010000118.1  1485019-1485305     c
            1007-1007           "N"                1-1
            1008-1963           JACYVU010000118.1  1484063-1485018     c
            1964-1965           "NN"               1-2
            1966-3368           JACYVU010000118.1  1482660-1484062     c
FEATURES             Location/Qualifiers
     source          1..3368
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3368
                     /gene="Znf408"
                     /note="zinc finger protein 408; The sequence of the model
                     RefSeq transcript was modified relative to its source
                     genomic sequence to represent the inferred CDS: inserted 4
                     bases in 3 codons; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 ESTs, 3 Proteins, and
                     95% coverage of the annotated genomic feature by RNAseq
                     alignments, including 23 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100362202"
                     /db_xref="RGD:2318583"
     CDS             89..2155
                     /gene="Znf408"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 4 bases in 3 codons;
                     substituted 1 base at 1 genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:437..439,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: zinc finger protein 408"
                     /protein_id="XP_003749580.1"
                     /db_xref="GeneID:100362202"
                     /db_xref="RGD:2318583"
                     /translation="MKEVEKVYLGKTLTYSPDPRLGQDSEWSPPGKGFAQGLKGYTSP
                     AILALRSLPQGLAMGPSRSRKQHLGVWCVGAPXQPGLHWGPLEEEAVLEKGEGMKTSH
                     EEDFSLAPCGAICTXKQSSSWTSLVQPGRLQSDGNVSLVWVSEKLHLQVSQTGLPGVE
                     LLLRPQPPPKSLNVLHPKLEEVAAIMVAEEESAAREEAASPQEDSAESCTDPGHESPQ
                     SIQGDNKLVSESVAQTEDQPFKGSQDDSMDKPCLPQTAPEPQSNPAAQQSLESLLPPE
                     GAQLQTCPAKKLEVPSSQCLAAAQISEPSSXDMLVLLCSPPDPVGSSSKQGRRYRCGE
                     CGKAFLQLCHLKKHEFVHTDHKPFLCTECGRSYSSEESFRAHVLGHRGVRPFPCSQCD
                     KAYGTRRDLREHQVVHSGARPFVCEQCGKTFARRPSLRLHRKTHQVPDAPSSCPCPVC
                     GRLLATQGSLRNHMRLHTGEKPYLCPHCGQAFRQRGNLPGHLRLHTGERPYQCPHCAN
                     TFPQLPELRRHLISHTGEAYLCPVCGKALRDPHTLRAHERLHSGERPFRCPQCGRAYT
                     LATKLRRHLKSHMTDKPYRCPICGMGYALPQSLKRHQLSHQCGVSSSPSLTPAASEPP
                     MXLDTCSQQEAPRGEGIVEVTICESQEKCFIVPEEPAPSPSLVLIRKDMGFSGWTKVV
                     EVEAGT"
ORIGIN      
        1 gaaaaaaaaa accaaaacca aaacaaacaa acaaaaaaaa aaactcactt ccggtagagg
       61 ggagtggcgg gagcatctct gttccaggat gaaggaggtg gagaaggtgt acttggggaa
      121 gacactgacg tactccccgg atccacgcct gggccaggac tcagaatgga gccctcccgg
      181 aaaaggcttt gctcagggcc tcaaaggcta cacgagccct gccatccttg ctctaaggag
      241 cctcccccag ggcttggcca tgggaccctc gagatccagg aaacagcact tgggggtctg
      301 gtgtgtcgga gcacccnctc aacctggact gcactgggga cctctggaag aagaggccgt
      361 cttggagaag ggcgagggaa tgaagacatc gcacgaggag gacttctcgt tagccccgtg
      421 cggagccata tgtacctgaa agcagagctc atcttggacc agtctggtgc agccaggaag
      481 actgcagagt gatggaaatg tgtccttggt ttgggtcagt gagaagcttc acctgcaggt
      541 gagccaaacc gggctgccag gtgttgagtt gctgctgcgc ccacagcctc ccccaaaaag
      601 tctaaatgtc ctgcacccca agctagaaga agtagcagcc ataatggtgg cagaagagga
      661 gtctgccgca cgggaggaag cagcctcccc tcaagaggat tcagcagagt cttgcacaga
      721 tcctggtcac gagtcacccc agagcatcca aggagataat aaactagtct ctgaatctgt
      781 ggcccaaacc gaagatcaac ctttcaaggg tagccaagat gacagcatgg ataaaccatg
      841 cctaccacag acagcacctg agcctcagag caacccagct gcccagcaga gcctagagag
      901 tttattacct cctgagggtg cccagctgca aacctgccca gccaagaagt tagaagtccc
      961 cagcagtcag tgcctggctg cagcacagat ctcagagccc agctccnctg acatgcttgt
     1021 actgctctgc agccctccag acccagtagg aagctcctca aagcagggcc gacgatacag
     1081 gtgtggggag tgtggcaagg cattcctgca actatgccat cttaagaagc atgagtttgt
     1141 gcacacggac cacaagccct ttctgtgcac cgagtgtggc agaagctaca gctctgagga
     1201 aagcttcaga gctcacgtgc tgggccatcg tggtgtgcgg cccttccctt gctctcagtg
     1261 tgacaaggct tatggtaccc gcagagacct cagagagcat caggtggtcc attcaggtgc
     1321 ccggcccttt gtgtgtgagc aatgtggcaa aaccttcgcc cgccgacctt ccctgcggct
     1381 acaccggaag acccaccagg tgccagatgc cccttcatca tgcccgtgcc cagtgtgtgg
     1441 acggctcctg gccacccagg gttcccttcg gaaccacatg aggctgcaca ctggagagaa
     1501 gccctacctg tgcccacact gtggtcaagc attccgccag cggggcaacc tcccaggaca
     1561 tttgcggcta cacacagggg agcgccccta ccaatgccca cattgtgcca atactttccc
     1621 ccagctgcct gaactgcgac gccatctcat ctcccacact ggcgaggcct acctgtgccc
     1681 cgtgtgtggg aaggccctgc gagacccaca tacactccgt gctcatgaac gcctacactc
     1741 gggggagagg ccctttcgct gcccccagtg tggccgagct tacacactgg ccaccaagtt
     1801 gcgccgccac ctcaagtccc acatgacaga caagccgtac cgatgcccca tctgtggtat
     1861 gggctatgct ctccctcaaa gcctcaagcg acatcagctc agtcaccagt gtggggtttc
     1921 atccagccct tctctgactc ctgctgcctc tgagccccct atgnngctgg acacgtgtag
     1981 ccaacaggaa gccccgcggg gtgagggcat tgtggaggtc accatctgtg aaagccagga
     2041 aaagtgcttt atagtaccgg aggagccggc ccccagcccc agcctggtgc tcatccgcaa
     2101 ggacatgggc tttagcggct ggaccaaagt ggtagaggta gaggcaggca cctgacaccg
     2161 tcatcacccc ttctttaccc ctacgagagc tctctgtgag gacttgtagc agtgtgtttg
     2221 tgtcattccc ttcgggtctc ctgagagcgg caggaaccca gctgactggc gtcttaggat
     2281 tggatagact cagctgctga tccacccacc acatgccctc tgtagttcag gttttagttc
     2341 agtcagctgc tttcacatct gaaggttgtg aaagctaaag gagacactgt ggggagatgg
     2401 gtggggtggg acttgtgcac tccataagct cggccacgga agctatgagg ggttaacacg
     2461 atttgcttgt gcactctgtg agcctagaca acatgagatg ttggggacaa accaaacagg
     2521 ctcatggtga cacacccctg gaatcccagc actcaagcag aggcaaaagg gttgcctcaa
     2581 atctaaggcc agcatggact gtgtaagggg acccgtttca gtgagggagg gagaaacggt
     2641 aatggccttt acaaagcttg tgactcactg agctgtgagg atgggtccag tatgaccggg
     2701 taggctgggg gtcagctcac acctggaatc cctgctcttg gaagcacaag tttgcgacct
     2761 acctgcccga ccttaggaag aagaaaaacc attggatacg agttcagagg ggacatgttg
     2821 ttatatgata gtgtgatgtg atctcagtat caccgtgggc ctccccaggg gtgacaacag
     2881 gagtatacct tcgtggtgag ccagactttg tgtgaactta tccgtgttga ggtagtattt
     2941 cttttttaaa caaatagaca actgtaaagc actttaaatg tgctaccata gccacaaagc
     3001 tgcccatggg ctgtctaaag tcagcctatt ccacctcatg ctgttcgtag gcttccagta
     3061 cagacaccgc actatcttgg tttacctgtt gttggtaggt gaatggatgt tcaagaggtg
     3121 agaggcagga atggagatat aattctaaag aggtggtgag gagacgcctt agtgctaact
     3181 tgctttagat gaagatgcag aactctccaa ccctggacca tacctgcctg gatgcttctg
     3241 tactcctgcc tcgatgataa tgaactgaac ctctgaccct gtaagccaac cccaattaaa
     3301 tgttgtcctt ataagaattg ctttggttgg gctggagaga tggcttagcg gttaagagca
     3361 ctaattgc
//
