LOCUS       NM_203366               3887 bp    mRNA    linear   ROD 25-FEB-2024
DEFINITION  Rattus norvegicus zinc finger, MYND-type containing 11 (Zmynd11),
            transcript variant 1, mRNA.
ACCESSION   NM_203366
VERSION     NM_203366.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3887)
  AUTHORS   Harter,M.R., Liu,C.D., Shen,C.L., Gonzalez-Hurtado,E., Zhang,Z.M.,
            Xu,M., Martinez,E., Peng,C.W. and Song,J.
  TITLE     BS69/ZMYND11 C-Terminal Domains Bind and Inhibit EBNA2
  JOURNAL   PLoS Pathog 12 (2), e1005414 (2016)
   PUBMED   26845565
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3887)
  AUTHORS   Wang,J., Qin,S., Li,F., Li,S., Zhang,W., Peng,J., Zhang,Z.,
            Gong,Q., Wu,J. and Shi,Y.
  TITLE     Crystal structure of human BS69 Bromo-ZnF-PWWP reveals its role in
            H3K36me3 nucleosome binding
  JOURNAL   Cell Res 24 (7), 890-893 (2014)
   PUBMED   24675531
REFERENCE   3  (bases 1 to 3887)
  AUTHORS   Wen,H., Li,Y., Xi,Y., Jiang,S., Stratton,S., Peng,D., Tanaka,K.,
            Ren,Y., Xia,Z., Wu,J., Li,B., Barton,M.C., Li,W., Li,H. and Shi,X.
  TITLE     ZMYND11 links histone H3.3K36me3 to transcription elongation and
            tumour suppression
  JOURNAL   Nature 508 (7495), 263-268 (2014)
   PUBMED   24590075
REFERENCE   4  (bases 1 to 3887)
  AUTHORS   Liu,H.P., Chung,P.J., Liang,C.L. and Chang,Y.S.
  TITLE     The MYND domain-containing protein BRAM1 inhibits lymphotoxin beta
            receptor-mediated signaling through affecting receptor
            oligomerization
  JOURNAL   Cell Signal 23 (1), 80-88 (2011)
   PUBMED   20732415
REFERENCE   5  (bases 1 to 3887)
  AUTHORS   Ogata-Kawata,H., Yamada,K., Uesaka-Yoshino,M., Kagawa,N. and
            Miyamoto,K.
  TITLE     BS69, a corepressor interacting with ZHX1, is a bifunctional
            transcription factor
  JOURNAL   Front Biosci 12, 1911-1926 (2007)
   PUBMED   17127430
  REMARK    GeneRIF: BS69 may function either as a transcriptional repressor or
            as a transcriptional activator depending on its regulatory partner.
            Publication Status: Online-Only
REFERENCE   6  (bases 1 to 3887)
  AUTHORS   Lo,K.W., Naisbitt,S., Fan,J.S., Sheng,M. and Zhang,M.
  TITLE     The 8-kDa dynein light chain binds to its targets via a conserved
            (K/R)XTQT motif
  JOURNAL   J Biol Chem 276 (17), 14059-14066 (2001)
   PUBMED   11148209
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC065308.1 and AB162617.1.
            
            On Sep 30, 2011 this sequence version replaced NM_203366.1.
            
            Transcript Variant: This variant (1) uses a different splice site
            in the 3' coding region, compared to variant 2. The resulting
            protein (isoform alpha) is shorter when it is compared to isoform
            beta.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132261,
                              SAMD00132262 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-139               BC065308.1         79-217
            140-1705            AB162617.1         1-1566
            1706-3887           BC065308.1         1790-3971
FEATURES             Location/Qualifiers
     source          1..3887
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /map="17q12.1"
     gene            1..3887
                     /gene="Zmynd11"
                     /gene_synonym="BS69"
                     /note="zinc finger, MYND-type containing 11"
                     /db_xref="GeneID:291259"
                     /db_xref="RGD:1303252"
     exon            1..135
                     /gene="Zmynd11"
                     /gene_synonym="BS69"
                     /inference="alignment:Splign:2.1.0"
     CDS             20..1828
                     /gene="Zmynd11"
                     /gene_synonym="BS69"
                     /note="isoform alpha is encoded by transcript variant 1;
                     zinc finger MYND domain-containing protein 11; zinc
                     finger, MYND domain containing 11"
                     /codon_start=1
                     /product="zinc finger MYND domain-containing protein 11
                     isoform alpha"
                     /protein_id="NP_976242.2"
                     /db_xref="GeneID:291259"
                     /db_xref="RGD:1303252"
                     /translation="MARLTKRRQADTKAIQHLWAAIEIIRNQKQIANIDRITKYMSRV
                     HGMHPKETTRQLSLAVKDGLIVETLTVGCKGSKAGIEQEGYWLPGDEIDWETETHDWY
                     CFECHLPGEVLICDLCFRVYHSKCLSDEFRLRDSSSHWQCPVCRSIKKKHSNKQEMGT
                     YLRFIVSRMKERAIDLNKKGKDSKHPMYRRLVHSAVDVPTIQEKVNEGKYRSYEEFKA
                     DAQLLLHNTVIFYGADSEQADIARMLYKDTCHELDELQLCKNCFYLSNARPDNWFCYP
                     CIPNHELVWAKMKGFGFWPAKVMQKEDNQVDVRFFGHHHQRAWIPSENIQDITVNVHR
                     LHVKRSMGWKKACDELELHQRFLREGRFWKSKNEDRGEEEAESSISSTSNEQLKATQE
                     PRAKKGRRNQSVEPKKEEPEPETEAVSSSQEIPTMPQPIERVSVSTQTKKLSASSPRM
                     LHRSTQTASDGVCQSMCHDKYTKIFNDFKDRMKSDHKRETERVVREALEKLRSEMEEE
                     KRQAVNKAVANMQGEMDRKCKQVKEKCKEEFVEEIKKLAAQHKQLISQTKKKQWCYNC
                     EEEAMYHCCWNTSYCSIKCQQEHWHAEHKRTCRRKR"
     exon            136..295
                     /gene="Zmynd11"
                     /gene_synonym="BS69"
                     /inference="alignment:Splign:2.1.0"
     exon            296..457
                     /gene="Zmynd11"
                     /gene_synonym="BS69"
                     /inference="alignment:Splign:2.1.0"
     exon            458..535
                     /gene="Zmynd11"
                     /gene_synonym="BS69"
                     /inference="alignment:Splign:2.1.0"
     exon            536..628
                     /gene="Zmynd11"
                     /gene_synonym="BS69"
                     /inference="alignment:Splign:2.1.0"
     exon            629..716
                     /gene="Zmynd11"
                     /gene_synonym="BS69"
                     /inference="alignment:Splign:2.1.0"
     exon            717..772
                     /gene="Zmynd11"
                     /gene_synonym="BS69"
                     /inference="alignment:Splign:2.1.0"
     exon            773..850
                     /gene="Zmynd11"
                     /gene_synonym="BS69"
                     /inference="alignment:Splign:2.1.0"
     exon            851..969
                     /gene="Zmynd11"
                     /gene_synonym="BS69"
                     /inference="alignment:Splign:2.1.0"
     exon            970..1177
                     /gene="Zmynd11"
                     /gene_synonym="BS69"
                     /inference="alignment:Splign:2.1.0"
     exon            1178..1246
                     /gene="Zmynd11"
                     /gene_synonym="BS69"
                     /inference="alignment:Splign:2.1.0"
     exon            1247..1519
                     /gene="Zmynd11"
                     /gene_synonym="BS69"
                     /inference="alignment:Splign:2.1.0"
     exon            1520..1705
                     /gene="Zmynd11"
                     /gene_synonym="BS69"
                     /inference="alignment:Splign:2.1.0"
     exon            1706..3870
                     /gene="Zmynd11"
                     /gene_synonym="BS69"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctaaagaagt aaacaggtca tggcacgttt aacaaaaaga cgacaggcgg acacaaaagc
       61 tatccagcat ctttgggcag ccattgaaat tatcaggaat cagaagcaga ttgccaacat
      121 tgatcgtatt acaaagtata tgtcccgggt ccacggcatg catcccaaag agaccacgcg
      181 gcagctgagc ttagctgtga aagatggtct cattgtggaa actctaacag tgggctgcaa
      241 aggttcaaaa gctggcattg aacaggaagg atattggtta ccaggagatg agattgactg
      301 ggaaacagaa actcatgact ggtattgttt tgaatgccat ttgcctggag aggtgttgat
      361 atgtgacctg tgttttcgtg tgtatcattc caagtgtttg tctgatgagt tcaggcttag
      421 agacagcagt agtcactggc agtgcccagt ttgcaggagc attaagaaga agcattctaa
      481 caagcaggag atgggcacct acctgaggtt catcgtctcc cgcatgaagg agcgggctat
      541 agaccttaat aaaaaaggaa aggacagtaa gcacccgatg taccggagac tggtccactc
      601 agctgtggac gtccctacca tacaagagaa ggtgaatgag gggaagtacc ggagttatga
      661 ggagttcaag gctgacgcac agctgcttct ccacaacaca gtgatcttct atggagcaga
      721 cagtgagcaa gcggacattg caaggatgct ctataaagac acgtgtcatg agctggacga
      781 gctgcagctt tgcaagaact gcttctacct gtcaaacgca cggcccgaca actggttctg
      841 ctacccttgc atacctaatc atgagctggt ttgggctaaa atgaaaggtt ttgggttttg
      901 gccagccaaa gtcatgcaga aagaagacaa tcaagttgat gttcgcttct ttggccatca
      961 ccaccagagg gcctggattc cttctgaaaa cattcaggac atcacagtca atgttcaccg
     1021 actgcatgtg aagcgcagca tgggctggaa aaaggcctgt gatgagctgg agctgcatca
     1081 gcggttcctc cgtgaaggga ggttctggaa gtctaagaat gaggaccgag gtgaggaaga
     1141 ggcagaatcc agtatctcct ccaccagtaa tgaacagctg aaggccactc aagagccaag
     1201 agcaaagaaa ggacgacgta atcagagtgt ggagcccaaa aaggaagaac cagagccaga
     1261 aacggaagca gtaagttcca gccaggaaat ccccacaatg cctcagccaa ttgagagggt
     1321 gtcagtgtca acccagacca agaagttaag tgcctcttcc ccaagaatgc tgcaccgaag
     1381 cactcagacg gcgagcgatg gcgtctgtca gagcatgtgc cacgacaagt acaccaaaat
     1441 ttttaatgac tttaaagaca ggatgaagtc ggaccacaag cgtgaaacag agagagtggt
     1501 gcgggaagcg ctggaaaagt tgcgttctga aatggaagaa gaaaaaagac aagctgtaaa
     1561 taaagctgta gccaacatgc agggtgagat ggacagaaag tgtaagcagg tgaaggaaaa
     1621 gtgcaaggaa gaatttgtag aggagatcaa gaagctagcg gcccagcaca agcagctcat
     1681 ttctcagacc aagaagaagc agtggtgcta caactgtgag gaggaggcca tgtaccactg
     1741 ctgctggaac acgtcctact gctccatcaa gtgccagcag gagcactggc acgcagagca
     1801 caagcgcacc tgccgccgga agagatgagc ctgcctgcca ccctcacaca cagcggtttt
     1861 tgttcccaag aagccaaaat tgtttagaat ttgcttccca ttttgcacca gcctttaaac
     1921 acttttcgtg gtgaaatttt gcacagtagt ttaaatcttt tgttaatgct cctccggcat
     1981 ttttcggggg ctgaagtaac atcaatggag ggtattactc taaataaatc taattgagga
     2041 tttgttgcat tttcagcaaa ttttaaaaac atttttaggt tttacagaaa ttttaacctt
     2101 taaacaacag atcttaaaaa aaaaacaccg acaggtgaat acgagtgagt ctaacagaga
     2161 cggaacagag ctgaatgtaa gagcagcaga tgcttcagaa gaacagacta cctggccgtg
     2221 acctggccgt gacctcgctg agctggtgtt gtgcagctgg ctcacgctca caggccttgc
     2281 ctgtggctgt gctggcggcc tgtgattgaa tatagggaac agggttgaca cagcagggct
     2341 agccctgcat attttttctt aaatatttcc caattgtgtt ttcattattt cttttcaata
     2401 tataactttt ataacaaatt attagctttg atcttgtagt ttaaaattgc agggaaactg
     2461 gggtaatctt ttactgagct ggatcttaga gaaaaatgaa tatttaaatt ttaaagtttg
     2521 cacatttcat ctttgtcccg agtgcttgta acaaaatcag cagcaaaaac aaacatcaaa
     2581 agccaaaaac tacctgtact cagaacacgg aattacagct gaggcataca agtttataac
     2641 tgagtcccct ccctccccgg tgccacccta acccagccct gtgtctcctc agaggagaga
     2701 gcacttgcgg gtcacagaag ccgttgtgtt gtagggaggg tcattgctac taacgaactc
     2761 catcactgta cacagtgaga atgcatgcta ctttccttgt attaaagata ccgtgatttg
     2821 tataaagtct gtattctgcg gggtgtctgg ttaagaagca ttactggtag gaatggatcg
     2881 atagttgaat aacatttttt tatacataga tatataaaag acaaccagga aaattaaaat
     2941 tctttaaaac tatctcacca attgtttttg ttctcctcca agacccacca cagaccaagc
     3001 caaattccca ctttactctt tagttatttt tgaggttaga gaaataattt gtaaatattt
     3061 atttagacct ttgatattta ttaaagcaat tactcacaac agaagtgaag gagtcaggag
     3121 aaaagccttt aagacagttt tctccggtcc atcagggtca ctctaaagat gaaaggaagg
     3181 agcgtctgtg agacctcctc caccggtgcc catgctattg cagacggtgt aactactgcc
     3241 acacgggctc gctcttttgt acaacccacc catggcccat gagctcccgc caggttttcc
     3301 ggcaactgca atagctcggc accaccgccc cctcctcgct gccgttccca tccctgctgc
     3361 tgcgctgcct gaacaaggac acttgacagt ctttggttgt ttccaggttg tcagacgtcg
     3421 atccacccct gtgagagcaa gtcattgtgg gaatattttg gtgtgaaatc attccagagt
     3481 atgtactatt tacctgatag ctgcatgaaa gtgaggttcc tgttactttg gcttcttgtc
     3541 tctgtcgaca cggctgcaca tttccaagtt actacagtgt gaaaactgtg tgttaaaaaa
     3601 aaaacaaaat taaaaaaaga gattgtggcc tggttttgta aaagttttag gtaaaattac
     3661 aattgattgt tttaggaatc attaaaattt tctgcaatca taaagctata tcaaggtgtt
     3721 gagtttagcc actctgcaca ttgtaagtac ccatcgtggc tgtccagttc tatgatgcgt
     3781 tctggcattt tgtaagctgc tctgactagc aatatataga tttcatttac tgtgttaaca
     3841 ttggttaata aatgtattta aaaaacccaa aaaaaaaaaa aaaaaaa
//
