LOCUS       NM_001108681            4134 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus zinc finger MYM-type containing 6 (Zmym6), mRNA.
ACCESSION   NM_001108681 XM_001059117 XM_342921
VERSION     NM_001108681.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4134)
  AUTHORS   Bai,S.W., Herrera-Abreu,M.T., Rohn,J.L., Racine,V., Tajadura,V.,
            Suryavanshi,N., Bechtel,S., Wiemann,S., Baum,B. and Ridley,A.J.
  TITLE     Identification and characterization of a set of conserved and new
            regulators of cytoskeletal organization, cell morphology and
            migration
  JOURNAL   BMC Biol 9, 54 (2011)
   PUBMED   21834987
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Jan 1, 2009 this sequence version replaced NM_001108681.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643299.24329.1,
                                           SRR26643296.16138.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-218               JAXUCZ010000005.1  144681175-144681392
            219-357             JAXUCZ010000005.1  144682197-144682335
            358-424             JAXUCZ010000005.1  144690774-144690840
            425-650             JAXUCZ010000005.1  144692041-144692266
            651-822             JAXUCZ010000005.1  144696793-144696964
            823-973             JAXUCZ010000005.1  144702789-144702939
            974-1089            JAXUCZ010000005.1  144704506-144704621
            1090-1365           JAXUCZ010000005.1  144706015-144706290
            1366-1516           JAXUCZ010000005.1  144706900-144707050
            1517-1689           JAXUCZ010000005.1  144707889-144708061
            1690-1837           JAXUCZ010000005.1  144709176-144709323
            1838-2005           JAXUCZ010000005.1  144711070-144711237
            2006-2043           JAXUCZ010000005.1  144712363-144712400
            2044-2188           JAXUCZ010000005.1  144725048-144725192
            2189-4134           JAXUCZ010000005.1  144726780-144728725
FEATURES             Location/Qualifiers
     source          1..4134
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..4134
                     /gene="Zmym6"
                     /gene_synonym="RGD1561833"
                     /note="zinc finger MYM-type containing 6"
                     /db_xref="GeneID:362602"
                     /db_xref="RGD:1561833"
     exon            1..218
                     /gene="Zmym6"
                     /gene_synonym="RGD1561833"
                     /inference="alignment:Splign:2.1.0"
     exon            219..357
                     /gene="Zmym6"
                     /gene_synonym="RGD1561833"
                     /inference="alignment:Splign:2.1.0"
     CDS             268..4017
                     /gene="Zmym6"
                     /gene_synonym="RGD1561833"
                     /note="zinc finger, MYM-type 6"
                     /codon_start=1
                     /product="zinc finger MYM-type protein 6"
                     /protein_id="NP_001102151.1"
                     /db_xref="GeneID:362602"
                     /db_xref="RGD:1561833"
                     /translation="MKEPLDGGCDKAMAQQGLLDRIKEEPDDAHEYGPQESELKISAV
                     FSASDTSLGFQVGLPSPGLSASFPAVPAAQVFCFGCKQLLRKGQPTYRKAGSAQLFCS
                     MGCVITFSSAVCVPPLPKRTCAHCSKDILNPMDVITTQFENSSLCKEFCSQSCLFSYE
                     LKKPVVTIYTSGISAKCSMCQKGTDNLAPKPLYALGNSSRLSAEMIETTNDSGRTELF
                     CSINCLSAYRIKTVISSGIQVLCHSCKTAAVPQYHLAMSNGTICSFCSSNCVLAFQNV
                     FNKPKGRNSSLAPISQGQEVLSAPMQSAVSARKEAPAPSFSSPISNPAAAALETLAKE
                     SHQIALTLSFLKLTCLQCSLLFATKPELLFYKGRMFMFCGKACCDEYKRQNKVKALCD
                     YCKLQKTIEDTVRFSGVDKPFCSEVCKVLSARDFGERWGNYCKTCSYCLQTSANFVEN
                     QLEGKLQVFCCEDCMSKFTALLYQTARCDACKRQGKLSESLKWRGNIKYFCNLFCVLK
                     FCHQYSANDPIPQRKVFVLPKPAQVIIPKVQTAMTALPSPKIATTPVITSVTSLAKIP
                     ALQPSRNTNSVCTDAGPTEATKIIGNGSKPAAAERLQSPQAPKLLKNKGILCKPVTQT
                     KATSCRPHTHHVACQTDSPLPDGKNEEYDSPPAKRRRVDFFHTCNADYIKFGFIICSG
                     SKESSPSPQCVICGEILPSESVMPVSLSNHLKAKHSDLENKPIDFFEEKSLEMECQNS
                     SLKKCLLVEESLVKASYLIAFQIAARNKPFSIAEELIKPYLVEMCSEVLGSSAGDKMK
                     TIPLSNSTIGCRIKKLSEDIEDQLLQKVRESRWFALQVDESSEVTDVPLLLCYVRFVD
                     YDCGDVKEELLFCTEMPSPSTDLKVFELINQYIDSRSLHWNHCVGFCTDGAASLTDEC
                     SHLRSKIQEIAKNTVTFTHCFIHREHLAAEKLSPCLHEILLQLSQILSFVKNSASDSR
                     MLTILCEEVGSGHVSLPLSAEVRWLARGRILTRLFELRHEIEIFLNQKHSDLARYFHD
                     EEWVAKLAYLADIFSLINKLNSSLQGTMTTFFSLYNKVEIFKKRLKMWLKRAQENDYD
                     MFPLFSEFLDSSDVSVRNIASIICEHLEGLSQVFHDCYPPEKDLRSGNLWLLNPFASY
                     QDNNLTDSEEENLAALSSDTRFQSVHKSMSVTQFWVNAKTSYPELHEKAMKLLLPFSS
                     TCLCDAAFSALTASKQRDLRTYSPSLRLAVTSLVPRIDKLAKEKD"
     exon            358..424
                     /gene="Zmym6"
                     /gene_synonym="RGD1561833"
                     /inference="alignment:Splign:2.1.0"
     exon            425..650
                     /gene="Zmym6"
                     /gene_synonym="RGD1561833"
                     /inference="alignment:Splign:2.1.0"
     exon            651..822
                     /gene="Zmym6"
                     /gene_synonym="RGD1561833"
                     /inference="alignment:Splign:2.1.0"
     exon            823..973
                     /gene="Zmym6"
                     /gene_synonym="RGD1561833"
                     /inference="alignment:Splign:2.1.0"
     exon            974..1089
                     /gene="Zmym6"
                     /gene_synonym="RGD1561833"
                     /inference="alignment:Splign:2.1.0"
     exon            1090..1365
                     /gene="Zmym6"
                     /gene_synonym="RGD1561833"
                     /inference="alignment:Splign:2.1.0"
     exon            1366..1516
                     /gene="Zmym6"
                     /gene_synonym="RGD1561833"
                     /inference="alignment:Splign:2.1.0"
     exon            1517..1689
                     /gene="Zmym6"
                     /gene_synonym="RGD1561833"
                     /inference="alignment:Splign:2.1.0"
     exon            1690..1837
                     /gene="Zmym6"
                     /gene_synonym="RGD1561833"
                     /inference="alignment:Splign:2.1.0"
     exon            1838..2005
                     /gene="Zmym6"
                     /gene_synonym="RGD1561833"
                     /inference="alignment:Splign:2.1.0"
     exon            2006..2043
                     /gene="Zmym6"
                     /gene_synonym="RGD1561833"
                     /inference="alignment:Splign:2.1.0"
     exon            2044..2188
                     /gene="Zmym6"
                     /gene_synonym="RGD1561833"
                     /inference="alignment:Splign:2.1.0"
     exon            2189..4134
                     /gene="Zmym6"
                     /gene_synonym="RGD1561833"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtggcagctc atcacgtgac gcgcggcggg ctgcgcagcg gtggtgccat agcatcctga
       61 ggcttgctgg agttggtagc tcgcgcgctt agttggagac tgagttcctc cgctggccct
      121 tgtggacagg ctgggggaat tctggttgcg aacgggaacg ccggagaatt tgcgacattc
      181 agaggaggga tacgcgcctg tagatggtca caactgtgga gccatcttag ttttagatgg
      241 gagaagaact ctgcataaac agttagaatg aaagaacctt tggatggggg atgcgacaaa
      301 gcaatggcac aacaagggct tctggacaga attaaagaag aacctgatga tgctcatgaa
      361 tatggacctc aggaaagtga actaaaaatc agtgctgtgt tttcagccag tgacacttct
      421 cttggttttc aggttggtct accatcccct ggcctgagtg catcatttcc tgcagttcca
      481 gctgctcaag tgttttgttt tggttgtaaa caactgcttc gtaaggggca gcctacgtac
      541 cgtaaggcag ggtctgccca gctcttctgt tccatgggat gtgtcatcac gttctcctca
      601 gcggtctgcg tgcctcctct tcccaagaga acctgcgcac actgctccaa agacatttta
      661 aatccgatgg atgtgatcac aactcaattt gaaaattcct ctctctgcaa agagttctgc
      721 agccagtcat gcctattttc ttatgagcta aagaagcctg ttgttaccat atataccagt
      781 ggcatttctg ctaagtgcag tatgtgtcag aagggcactg ataatctggc cccgaagcca
      841 ctctatgcct tggggaattc atcgaggctg tctgctgaaa tgatcgagac taccaatgac
      901 tcaggaagaa cagagctttt ctgctctatt aactgcttat ctgcttacag aattaagact
      961 gttatttctt caggtataca ggttttgtgt catagttgta aaactgcagc agtccctcag
     1021 taccacctag caatgtcaaa tggaacgatt tgcagcttct gtagctccaa ctgtgtgctg
     1081 gctttccaga atgtatttaa caagccaaag ggaaggaact cttcattggc acccatatct
     1141 caaggccaag aagtgctgag cgcacccatg cagtctgcag tgtcagcacg aaaagaagcc
     1201 cccgcccctt ccttcagcag ccccatcagc aaccctgctg cagccgctct ggagaccctt
     1261 gccaaggagt cccaccagat cgctttgacc ctttccttct tgaaactcac gtgcctgcag
     1321 tgcagccttc tgtttgccac aaagccagag ctgcttttct acaagggtag aatgtttatg
     1381 ttttgtggca aggcttgctg tgatgaatac aaaaggcaaa ataaagttaa ggccttgtgc
     1441 gactactgta agctacagaa gaccatagag gatactgtgc gattctcagg ggttgacaag
     1501 cctttctgta gtgaagtttg caaggtcctc tccgctcgag actttgggga aagatgggga
     1561 aactactgta agacgtgcag ttactgttta cagacgtctg caaattttgt ggaaaatcaa
     1621 ctggaaggca agctccaggt tttctgctgt gaagattgca tgtctaagtt tacagctttg
     1681 ttatatcaga cagccaggtg tgatgcctgt aaacggcagg gtaagctaag cgaatccttg
     1741 aagtggagag gcaacatcaa atacttctgt aacctgtttt gtgtcttgaa gttttgccat
     1801 cagtatagtg cgaatgaccc aattccacaa agaaaagtgt ttgtgctccc aaagccagca
     1861 caggtaatta ttcctaaggt acaaactgct atgacggcac tcccttctcc aaagatagct
     1921 acaacaccgg ttataaccag tgtgacatca ttggcaaaaa tacctgcact ccagccctcc
     1981 aggaacacta acagtgtctg cacagatgct ggtcctacag aggcaacaaa gatcattgga
     2041 aatggaagca aaccggcagc tgctgagaga cttcagtctc cgcaggcccc caagcttctg
     2101 aagaacaaag gcatactgtg taagccagtt acacagacca aggccacctc atgcagacca
     2161 cacacccacc atgttgcatg ccagacagac tcacctctgc cagatgggaa aaatgaagaa
     2221 tatgattctc cacctgcaaa gagaagaaga gtagactttt tccacacttg caatgcagac
     2281 tatatcaaat ttggtttcat tatctgttct ggatcaaagg aaagttcacc aagcccacag
     2341 tgtgtcattt gtggagagat cttacctagt gaaagtgtga tgccagtaag tctttctaac
     2401 catttgaagg caaaacattc agatttagag aacaagccaa tagacttttt tgaggaaaaa
     2461 tcacttgaaa tggaatgtca aaacagttct ttaaaaaagt gtttactagt tgaagagtca
     2521 cttgtgaaag cttcttattt aattgctttc caaattgctg ccaggaataa gccattctca
     2581 attgctgaag aattaattaa accatattta gtagaaatgt gttcagaagt tttgggttca
     2641 agtgctggag acaaaatgaa aaccatccct ctttctaata gcacaattgg gtgcaggatc
     2701 aagaaactgt ctgaagacat tgaagaccag ctgctgcaga aggtccggga gtccaggtgg
     2761 tttgccctgc aggtggatga gtcatccgag gtcacagatg tgccgcttct cctctgctat
     2821 gtccgcttcg tcgactatga ctgtggagat gtgaaagaag aattattatt ttgcactgaa
     2881 atgccttctc cgagcacaga tcttaaagtg tttgaattaa taaatcaata tattgatagt
     2941 aggtctctgc attggaacca ttgtgttggt ttctgtactg acggggctgc aagcctgact
     3001 gacgagtgtt ctcacttaag gtcaaaaatt caagaaattg ccaagaatac ggtgacattt
     3061 acacattgtt tcattcaccg tgaacactta gcagccgaaa aactatctcc atgcttacat
     3121 gagattcttt tgcagttgtc acagatttta agctttgtaa agaacagtgc ctcggattca
     3181 cgaatgttga caattttgtg tgaagaggtg ggatctgggc atgtgagttt accacttagt
     3241 gctgaagtgc gctggctggc gagaggaaga attttaacaa gactgtttga actgagacat
     3301 gaaattgaaa tatttttaaa ccaaaagcat tcagatttgg ccaggtattt ccatgatgaa
     3361 gaatgggttg caaagctagc ctacttagca gatatatttt cgcttataaa taaattaaat
     3421 tcaagtctcc aaggaactat gaccactttt ttcagtttgt ataataaagt tgaaatattt
     3481 aagaaaaggc taaaaatgtg gttgaagcgt gcacaagaga atgattatga tatgttccct
     3541 ctattttctg agttcttgga ctcatcagat gtaagcgtga gaaacattgc tagcattatt
     3601 tgtgagcacc tggaaggact ttctcaggta ttccatgatt gttatccacc agaaaaggac
     3661 ttgcgttcag gaaatctgtg gctcctgaat cctttcgcca gttaccagga taacaatctg
     3721 actgactcgg aggaagaaaa ccttgcagcg ttatcttcag atacgagatt ccaatcagtt
     3781 cataaatcaa tgtctgtcac gcagttttgg gtcaatgcaa aaacaagtta tcccgagctc
     3841 catgaaaagg caatgaaatt gctcctgccc ttctcaagca cctgtctgtg cgatgctgcc
     3901 ttctcggcct tgactgcctc aaaacagaga gacctgcgga cttacagtcc ctccctaaga
     3961 ttggcagtca cgtcattagt tccaaggata gacaagttag caaaggagaa agactagtat
     4021 ctgtattgct tatcgtcaga gtgtataatt ttgtgttaaa ttttgtataa gtatcctaaa
     4081 atacaatttg ctaatgtatc tgtattttca gtgattaaat gttttaatat tttt
//
