LOCUS       XM_039093850            5081 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zinc finger MYM-type containing 5
            (Zmym5), transcript variant X2, mRNA.
ACCESSION   XM_039093850
VERSION     XM_039093850.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051350.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039093850.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5081
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5081
                     /gene="Zmym5"
                     /note="zinc finger MYM-type containing 5; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 40 ESTs, 6 long SRA reads, 5 Proteins, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 69 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:305911"
                     /db_xref="RGD:1306353"
     CDS             280..2166
                     /gene="Zmym5"
                     /codon_start=1
                     /product="zinc finger MYM-type protein 5"
                     /protein_id="XP_038949778.1"
                     /db_xref="GeneID:305911"
                     /db_xref="RGD:1306353"
                     /translation="MEAHLEDAESSDGPSSSVGSTARYTPVEDDDVVFVESVQPAVCG
                     PAVSNERNLIFTSSKHENPRGNYSTVPPSSRDLTFHKGNICETIIIDDEGDTETNGGE
                     ERNPTNFIEWGPHGNKNSTKTVDFPIASLSRSKTKTAVGPFNPGRIDITDEFHNGRFA
                     VHPNPDSCISQSASFPRNQKQQGADSLSPVASLPKQNFQPSNQHLTKPANKIICANCK
                     NPLQKGQTAYQRKGSAHLFCSTTCLSSFSHKRTRKTRSAMCKKDSPVKPTTIVPPVES
                     SKSLREFHSASPSPYENCQSLRKEVFTKSRCIICNKLGEVRHEISVNSITHKLCSNSC
                     FNEYRLTNGLIMNCCEQCSKYMPKSTGHSILITGQQKRFCCLSCADEYKEIMEAKSKI
                     LLLQNRKRNAIREENEKKLYESSKTLSGNTGEIPEKKEKISEIIKVAADCSLDTSSEE
                     RNVNLPCSVAAVSDKFQEQLGDKNSEEFDASVVLSLDPGSWPRILNMKQREFLVKTEP
                     PQVRNFNFPKDSIGKKFSETYYTQILPNGEKTTRSWLLYSVSKDSVFCLYCRLFGEGK
                     NQLRNENGCKDWHHLSHILSKHEESEMHINNSVKYSKFKSNLQNKTNEATEGGENIVQ
                     LLYI"
ORIGIN      
        1 tcctctaccg cctcctctgc ctcctcctca ccagcgctga agacggtact ggacggagct
       61 gagcgtagtt gtttgtgcgg cgcaagggga gtgggccgcg ggagggtagg ttcgttcggc
      121 ggagctgcag ccagaaccgg atttctttct gctgttgtat tttttttttt tttttttttt
      181 ttttttggtt ctttttttcg gagctgggga ccgaacccag gaccttgtgc ttcctagagt
      241 ctttggggaa aactagttaa ctttacattg gacttggaca tggaagctca tctggaagat
      301 gcagaatcat ctgatggccc aagtagttct gtaggcagta cagccagata cacacctgtg
      361 gaagatgacg atgttgtgtt tgttgagtca gtacagcctg cagtttgtgg tccagcagta
      421 tctaatgaaa gaaaccttat atttacatct tcaaaacatg aaaatccacg aggaaattat
      481 tccacagttc ccccttcctc gagagatttg acttttcaca agggaaatat atgtgaaaca
      541 atcataattg atgatgaagg ggacacagaa acaaatggag gggaggagag aaatcctacc
      601 aactttattg aatggggacc tcatggaaat aaaaatagta ccaaaactgt ggatttcccc
      661 attgccagtc tatcaagaag caagaccaag actgccgtag gaccttttaa tccgggtagg
      721 attgatatta cagatgaatt tcacaatgga agatttgcag ttcatcccaa tcctgattct
      781 tgtatctccc agtcagcatc atttccccgt aaccagaaac aacaaggggc ggattcttta
      841 tcaccagtgg cctcacttcc taaacagaat ttccagccct caaaccaaca tcttactaaa
      901 cctgctaata aaattatttg tgcaaactgc aaaaatcctt tacagaaggg gcagacagct
      961 tatcaacgaa aaggatcagc tcacctcttt tgttcaacca cctgcctttc ttctttctct
     1021 cataagcgca ctcgaaagac acgcagtgca atgtgtaaaa aagattctcc tgtgaaaccc
     1081 acaactattg ttcctccagt ggagtcaagc aagtccttac gagaatttca tagtgcatct
     1141 ccatctccct atgaaaactg ccagagtctt aggaaagaag tttttactaa gtcaagatgt
     1201 ataatctgta ataaattagg agaggttcgc catgaaatca gtgttaacag tataacacat
     1261 aaactgtgta gtaacagttg ctttaatgaa tacagattga ccaatggtct cataatgaac
     1321 tgctgtgaac aatgtagcaa atatatgccc aagagtactg gacacagcat tctgattaca
     1381 ggacagcaaa agagattctg ctgcctgagt tgtgctgacg aatataaaga gataatggaa
     1441 gcaaaatcaa aaatactgct tttacaaaac agaaaaagga atgccatcag agaagaaaat
     1501 gaaaaaaaat tatatgaatc atcaaaaaca ctttcaggaa atacaggaga aataccagaa
     1561 aaaaaggaaa agatttcaga aataataaaa gttgcagcag actgtagcct agatacatca
     1621 tcagaggaac ggaatgtgaa tttaccttgt tctgtggcag cagtatctga taaatttcaa
     1681 gagcaactag gagacaaaaa ttcagaggaa tttgatgcat ctgttgtact ttctttggat
     1741 ccaggttcat ggccccgaat tttgaatatg aaacaacgtg aatttcttgt caaaacagag
     1801 ccacctcaag taagaaattt taattttcca aaagacagta taggcaagaa gttttcagaa
     1861 acatactaca cacagattct tccaaatggt gagaagacca ccagatcctg gctactctat
     1921 tcagtctcta aagattctgt gttttgccta tattgcagac tctttgggga aggaaaaaat
     1981 caactgagaa atgagaatgg gtgcaaagat tggcaccatt tgtcacatat tcttagtaaa
     2041 catgaagaaa gtgaaatgca catcaacaat agtgttaaat attcaaaatt taaatctaac
     2101 ttgcaaaata aaaccaacga agctacagaa ggtggggaaa atattgtgca actgttgtac
     2161 atataacacc ctgtctgttc tatatatatg acagtgtgtg cattacccag acactgtcat
     2221 caaaagtttt gtgcccggaa ccagtaccat acactgtgta agaggaacaa ttagcaatat
     2281 gtctaatagc aaataaatag tgaaaactgt tcttgttcta aatctaaatg cattcttgta
     2341 gatcttagca aaggcagttt gagctttgtc actctgaggg ttctcacctt gttaagtgtt
     2401 cttggaggac ttccacttaa tggcctaaga gcaagaaaag gcaagatgca tccataacaa
     2461 gctaaagaaa ctatattcag gccacaagga ggttggtaca caccttcagt ctcagcactc
     2521 agatacagat ggttggatgt ctgtgagtac ctaggccagc ctggtctaca gagcaagttc
     2581 caggacagcc aaagcacaca aaaaccctgt cttgaaaaac caaaaagaag ggaaaaaaga
     2641 aaatgcattc aaacagctta agaagctatg gctgtttcta ttaaaccaaa ttcttgagtt
     2701 tcatttcttt aaaacttttt tttttatttg agcaaaacag ttgttgtgat aaatagaggt
     2761 aatttgtgtt ttactgattt tatatttttg ttttcatttt aatgtgtaaa tgtttagtct
     2821 tgttatgaga attataaata gctattatgt tagtatgaag aaacattaaa atatatgtat
     2881 atgtgtatat atacatatgt atgtatatat tgttaacttt tcagtgttat agttaatttt
     2941 tcctgtgaaa gtatactcca tgtgtgaaat ttgagaaatt atgaatctaa aaaatttttt
     3001 cttcagactt aattcatttt tgttttcttg tataaaagct cttacttatg tggaactggg
     3061 aatggtggta ctcaggaggc agaggcagat tgatctctga aatcaatgcc agcctggtct
     3121 acagagtgag tttcaggaca actgggtctg catatctcaa aaaacaaaca cacaaaagag
     3181 acaaagaaaa aacttgtttg gtaactacaa ctggatctgg gtcttctgga tgaagattct
     3241 gttgggggtt ttcacaagat tgtccgtgaa ttcctgggaa ggaaacttgg tgaagagtct
     3301 ctttccagag gctgggggcc aagtagcagt aggtcttagg gtggcctcaa cacagttgcc
     3361 aaggatggca gcacaatccc tggctgatgg gtagcagtca tcaatactgg ctggccatca
     3421 acagtagctt cttgggccag tgtctgtggg gcagggacga gattcactga cacaggcaca
     3481 gttgcctgtt cccttgcata gagctgtggc acttgccaag cttgtttctc cagtagcctc
     3541 tccatacagg gagagtggga agcttagcca agatgatggt gacctcttga atggcagtgg
     3601 ctaactcctt ggagcaccta acaccaagac tactatgacc attgtagtcc ccagaagcaa
     3661 caaaagcctt tacctggaca gatggccagc ccctgctcct gcactggcat ggtcttgaga
     3721 ggctcatctt tcagggatgt actcaggaaa aactcaatga tctcagaatc cctagtgggc
     3781 aggaagaaca aacaggtctc ttctagggac ttgatcttca tgtccttgac taggcattcc
     3841 agcttctccc tgtcctacct ccaagccatg aacactactg caactccctg ggccaccagg
     3901 ccctcaaggt tcattggcca cttggcattt tcacaaagaa gcaaatctaa tgtttgatga
     3961 ccatctatgg tcctgattgt gaatttgata gttgtatttt ttgtttctga tttctgatgt
     4021 taattttatc atctattaat tctttcggga tatgtgagat tttcttgcaa aacagtgtca
     4081 ttatcaatga cctaaggaga tgcttcctcc tgtgtgggag cacttgagga acagtcgtgt
     4141 tctctagaat acccactaaa ccattctagg tacgttattc ctttccaggc agaggatata
     4201 gtttggttag tagaatgctt gccttagcac acaaaaaaag tgtgggtttg atctgcagac
     4261 ttcattaacc atgtggcagc aagcatgtaa gctttatcac tggggtgtta gaagcaaaca
     4321 gcacatgcca agccaccctg tctccagaag aaagtggctt ttaatcattc cggcttggat
     4381 ctaagtgaga cacggtggct gtcagctgta atccctgcac tgaggaaggt aaagcaggag
     4441 gagtgttaat aatgcaaggc caacctgggg tgtgtagtga gttcccaggc cagcataagc
     4501 tatagtgtgc tatgctcata agatagaaat tggctaattt taatgtaaat acagcttttt
     4561 gatatctcca aaatgtcact ttacactcag gtctgaggat actttagaga atttgacact
     4621 ttagttttat gggtaggagt gttttgcctg tatgtaaaat gtaccatggt tacctggttc
     4681 ctgcagaggc tagaagaggc ggtcacatct ggaacagaag tcacagatgt ttgttagctc
     4741 ccatttgagt gataggaacg aagcctggat tctctgtggt ttgaatgttc atagttctct
     4801 ttgctgtctt gatctgcgtt gtgctgagaa catcaatgtg aaaataacat tgttctgctg
     4861 tcggagtgat cctctccact acccacatat ttattgttga gttacttccc agggcagggc
     4921 tgctctatta cttgaataaa aaagtatatg ataatactca gtttatgact gacattcaga
     4981 caaaggtggt aggaagttga ctcatttgag tattctgcct cttgggaatc agtatcatgt
     5041 ataccaattt caactggaaa taaaaattgg gtccaagtcc a
//
