LOCUS       NM_001399496            6793 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus zinc finger MYM-type containing 2 (Zmym2), mRNA.
ACCESSION   NM_001399496 XM_039093865
VERSION     NM_001399496.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 6793)
  AUTHORS   Kunapuli,P., Kasyapa,C.S., Chin,S.F., Caldas,C. and Cowell,J.K.
  TITLE     ZNF198, a zinc finger protein rearranged in myeloproliferative
            disease, localizes to the PML nuclear bodies and interacts with
            SUMO-1 and PML
  JOURNAL   Exp Cell Res 312 (19), 3739-3751 (2006)
   PUBMED   17027752
REFERENCE   2  (bases 1 to 6793)
  AUTHORS   Kunapuli,P., Somerville,R., Still,I.H. and Cowell,J.K.
  TITLE     ZNF198 protein, involved in rearrangement in myeloproliferative
            disease, forms complexes with the DNA repair-associated HHR6A/6B
            and RAD18 proteins
  JOURNAL   Oncogene 22 (22), 3417-3423 (2003)
   PUBMED   12776193
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000015.1.
            
            On Jan 10, 2022 this sequence version replaced XM_039093865.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643296.34385.1,
                                           SRR26643298.57234.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-87                JAXUCZ010000015.1  35151430-35151516
            88-150              JAXUCZ010000015.1  35152608-35152670
            151-1007            JAXUCZ010000015.1  35166201-35167057
            1008-1290           JAXUCZ010000015.1  35173692-35173974
            1291-1456           JAXUCZ010000015.1  35175809-35175974
            1457-1669           JAXUCZ010000015.1  35176762-35176974
            1670-1741           JAXUCZ010000015.1  35185818-35185889
            1742-1892           JAXUCZ010000015.1  35186872-35187022
            1893-2008           JAXUCZ010000015.1  35187686-35187801
            2009-2125           JAXUCZ010000015.1  35190930-35191046
            2126-2276           JAXUCZ010000015.1  35193051-35193201
            2277-2449           JAXUCZ010000015.1  35197027-35197199
            2450-2615           JAXUCZ010000015.1  35199964-35200129
            2616-2650           JAXUCZ010000015.1  35200824-35200858
            2651-2780           JAXUCZ010000015.1  35204221-35204350
            2781-2896           JAXUCZ010000015.1  35205535-35205650
            2897-3068           JAXUCZ010000015.1  35206366-35206537
            3069-3194           JAXUCZ010000015.1  35208744-35208869
            3195-3289           JAXUCZ010000015.1  35210330-35210424
            3290-3458           JAXUCZ010000015.1  35211982-35212150
            3459-3610           JAXUCZ010000015.1  35212664-35212815
            3611-3725           JAXUCZ010000015.1  35218298-35218412
            3726-3977           JAXUCZ010000015.1  35218960-35219211
            3978-4098           JAXUCZ010000015.1  35220386-35220506
            4099-6793           JAXUCZ010000015.1  35221834-35224528
FEATURES             Location/Qualifiers
     source          1..6793
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /map="15p12"
     gene            1..6793
                     /gene="Zmym2"
                     /note="zinc finger MYM-type containing 2"
                     /db_xref="GeneID:305913"
                     /db_xref="RGD:1593255"
     exon            1..87
                     /gene="Zmym2"
                     /inference="alignment:Splign:2.1.0"
     exon            88..150
                     /gene="Zmym2"
                     /inference="alignment:Splign:2.1.0"
     exon            151..1007
                     /gene="Zmym2"
                     /inference="alignment:Splign:2.1.0"
     CDS             161..4291
                     /gene="Zmym2"
                     /note="zinc finger, MYM-type 2"
                     /codon_start=1
                     /product="zinc finger MYM-type protein 2"
                     /protein_id="NP_001386425.1"
                     /db_xref="GeneID:305913"
                     /db_xref="RGD:1593255"
                     /translation="MDTSSVGTLELTDQSPVLLGSTAMATSLTNVGNSFSGPPNPLVS
                     RSSKFQNSSVEDDDDVVFIEPVQPPPSSAPLVADQRPITFTSSKNEELQGNDPKILPS
                     SKELAPQKGSVSETIVIDDEEDMETNQGQEKNSSNFIERRPSETKNRTNDVDFSSSTF
                     SRSKVNAGMSNSGITTEPDSEIQIANVTTLETGVSSVSDGQLESTDGRDMNLMITHVT
                     SLHNTSLGDSSNGLQSSNFGVNIQTYTPSLTSQTKTGVGPFNPGRMNVAGDVFQNGES
                     APHHNPDSWISQSASFPRNQKQQGVDSLSPVASLPKQNFQPSNQQPTKPVKVTCANCK
                     KPLQKGQTAYQRKGSAHLFCSTTCLSSFSHKPAPKKLCVMCKKDITTMKGTIVAQVDS
                     SESFQEFCSTSCLSLYEDKQSPAKGALNKSRCTICGKLTEIRHEVSFKNMTHKLCSDH
                     CFNRYRMANGLIMNCCEQCGEYLPSKGAGNNVLVIDGQQKRFCCQSCVSEYKQVGSHP
                     SFLKEVRDHMQDSFLMQPEKYGKLTTCTGCRTQCRFFDMTQCIGPNGYMEPYCSTACM
                     NSHKTKYAKSQSLGIICHFCKRNSLPQYQATMPDGKLYNFCNSSCVAKFQALSMQSSP
                     NGQFVAPSDIQLKCNYCKNSFCSKPEILEWENKVHQFCSRTCSDDYKKLHCIVTYCEY
                     CQEEKTLHETVNFSGVKRPFCSEGCKLLYKQDFARRLGLRCVTCNYCSQLCKKGATKE
                     LDGVVRDFCSEDCCKKFQEWYYKAARCDCCKSQGTLKERVQWRGEMKHFCDQHCLLRF
                     YCQQNEPNMTTQKGPENLHYDQGCQTSRTKMTGSAPPPSPTPNKEMKNKAILCKPLTM
                     TKATYCKPHMQTKSCQTDENWKTEYVPVPIPVPVYVPVPMHMYSQSIPVPTTVPVPVP
                     VPVFLPAPLENSEKIPASVEDLKSKVSSDPLDTELLTMTDMMTEEEGKTEASNINSVI
                     IETDIIGSDLTKNSDSDIQSNMPDVPYEPDLDIEIDFPRAAEELDMENEFLLPPVFGE
                     EYEEQPRPRSKKKGTKRKAVSGYQSHDDSSDNSECSFPFKYTYGVNAWKHWVKTRQLD
                     EDLLELDELKSSKSVKLKEDLLSHTTAELNYGLAHFVNEIRRPNGENYAPDSIYYLCL
                     GIQEYLCGSNRKDNIFIDPGYQMFEQELNKILRSWQPSILPDGSIFSRVEEDYLWRIK
                     QLGSHSPVALLNTLFYFNTKYFGLKTVEQHLRLSFGTVFRHWKKNPLTMENKACLRYQ
                     VSSLCGTDNEDKIATGKRKHEDDEPVFEQVENTANPSRCPVKMFECYLSKSPQNLNQR
                     MDVFYLQPECSSSTDSPVWYTSASLDRNTLENMLVRVLLVKDIYDKDNYELDEDTD"
     exon            1008..1290
                     /gene="Zmym2"
                     /inference="alignment:Splign:2.1.0"
     exon            1291..1456
                     /gene="Zmym2"
                     /inference="alignment:Splign:2.1.0"
     exon            1457..1669
                     /gene="Zmym2"
                     /inference="alignment:Splign:2.1.0"
     exon            1670..1741
                     /gene="Zmym2"
                     /inference="alignment:Splign:2.1.0"
     exon            1742..1892
                     /gene="Zmym2"
                     /inference="alignment:Splign:2.1.0"
     exon            1893..2008
                     /gene="Zmym2"
                     /inference="alignment:Splign:2.1.0"
     exon            2009..2125
                     /gene="Zmym2"
                     /inference="alignment:Splign:2.1.0"
     exon            2126..2276
                     /gene="Zmym2"
                     /inference="alignment:Splign:2.1.0"
     exon            2277..2449
                     /gene="Zmym2"
                     /inference="alignment:Splign:2.1.0"
     exon            2450..2615
                     /gene="Zmym2"
                     /inference="alignment:Splign:2.1.0"
     exon            2616..2650
                     /gene="Zmym2"
                     /inference="alignment:Splign:2.1.0"
     exon            2651..2780
                     /gene="Zmym2"
                     /inference="alignment:Splign:2.1.0"
     exon            2781..2896
                     /gene="Zmym2"
                     /inference="alignment:Splign:2.1.0"
     exon            2897..3068
                     /gene="Zmym2"
                     /inference="alignment:Splign:2.1.0"
     exon            3069..3194
                     /gene="Zmym2"
                     /inference="alignment:Splign:2.1.0"
     exon            3195..3289
                     /gene="Zmym2"
                     /inference="alignment:Splign:2.1.0"
     exon            3290..3458
                     /gene="Zmym2"
                     /inference="alignment:Splign:2.1.0"
     exon            3459..3610
                     /gene="Zmym2"
                     /inference="alignment:Splign:2.1.0"
     exon            3611..3725
                     /gene="Zmym2"
                     /inference="alignment:Splign:2.1.0"
     exon            3726..3977
                     /gene="Zmym2"
                     /inference="alignment:Splign:2.1.0"
     exon            3978..4098
                     /gene="Zmym2"
                     /inference="alignment:Splign:2.1.0"
     exon            4099..6793
                     /gene="Zmym2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctggaccgag cggagttgtg cgtgtcgccg aaggggggtg ggccggggga ggggaggttc
       61 gttccgcgga gctgcagcca gaaccgggac cagaaatttc gttcaaccct atctggtgca
      121 tctttggcag aaagtgagga caacaccatt gttctttggc atggacacaa gttcagtggg
      181 aacattagaa ctgactgatc aaagtcccgt tttattagga agcacagcca tggcaactag
      241 tctcacgaac gtaggaaatt catttagtgg cccacctaat cctttagtgt ctagatctag
      301 taagttccag aattcatcag tggaagatga tgatgatgtt gtttttattg aacccgtaca
      361 acctcctcca tcttctgcac ctttggttgc tgatcaaaga cccataacat ttacatcttc
      421 aaaaaatgaa gaactacaag gaaatgatcc caaaattctt ccttcatcga aagagttggc
      481 tccacaaaag ggcagtgtaa gtgagacaat tgttattgat gatgaagagg acatggaaac
      541 aaatcaaggg caggagaaga attcctcaaa ttttattgaa aggagacctt ctgaaactaa
      601 aaacagaacg aatgatgtgg atttctctag ttccacgttt tcaagaagta aagtaaatgc
      661 aggaatgagt aatagtggta ttaccacaga accagactct gaaattcaga ttgctaacgt
      721 cacaacctta gaaacaggcg taagctctgt gagtgacggc cagctggaaa gtactgatgg
      781 gagagatatg aacttaatga ttactcatgt aacttcactg cataacacca gcctgggaga
      841 cagctctaat ggactgcagt ccagcaactt tggtgtgaat atacagacgt acaccccctc
      901 tctgacatca cagaccaaga ctggagtggg accgtttaat cctggtagga tgaatgttgc
      961 aggagatgta tttcagaatg gagagtctgc acctcatcat aatcctgatt cttggatctc
     1021 ccagtcagca tcatttcctc gtaaccagaa acaacaagga gtggattctt tatcaccagt
     1081 ggcctcactt cctaaacaga atttccagcc ctcaaaccaa caacccacta aaccagttaa
     1141 agtcacttgt gcaaactgca aaaaacctct acagaagggg cagacagctt atcaacgaaa
     1201 aggatcagct cacctctttt gttcaaccac ctgcctttct tctttctctc ataaacctgc
     1261 tccaaagaaa ctctgtgtta tgtgtaaaaa agatataact acaatgaaag gaaccattgt
     1321 tgctcaagtg gactcgagtg agtccttcca agaattttgt agtacatctt gtttgtctct
     1381 ctatgaggac aagcagagtc ctgctaaagg agctctaaat aaatcaagat gcacaatctg
     1441 tggtaaattg actgagattc gccatgaagt tagttttaaa aacatgactc ataagctgtg
     1501 cagtgaccac tgctttaaca gatacagaat ggccaatggt ctgataatga attgctgtga
     1561 acagtgtgga gaatatttgc ccagtaaagg tgctggaaat aatgttttgg tgattgatgg
     1621 tcagcagaaa agattttgct gtcagagttg tgtcagtgaa tacaaacagg taggtagcca
     1681 tccaagcttc ctgaaggaag ttcgagatca catgcaggat tctttcttaa tgcagcctga
     1741 gaagtacgga aaactgacaa cttgtactgg ttgccgaaca cagtgcaggt tttttgatat
     1801 gactcagtgc ataggtccta atggatatat ggagccatat tgttcaactg cttgcatgaa
     1861 cagtcacaag acaaaatatg caaaatcaca aagtttggga attatttgcc atttttgtaa
     1921 gcgaaactct ttacctcaat accaagccac gatgcctgat ggaaaactgt ataatttttg
     1981 caattctagt tgtgtggcta aatttcaggc tctaagcatg cagtcatctc caaatggcca
     2041 gtttgtagca cctagtgata ttcagttgaa atgcaactac tgtaaaaatt ccttttgttc
     2101 aaaaccagaa atcttggaat gggagaacaa agtgcatcag ttctgcagca gaacttgctc
     2161 agatgactat aagaagttgc attgcatagt tacatattgc gaatactgcc aagaggagaa
     2221 gactctgcat gaaacagtaa atttctctgg cgttaagaga cctttctgta gtgaaggctg
     2281 caagctgtta tacaaacaag attttgcaag acgattagga ttaagatgtg ttacctgcaa
     2341 ctattgttct caattgtgta agaagggagc cactaaagag ctggatggag ttgtccgaga
     2401 cttctgcagt gaagactgct gtaagaagtt ccaggagtgg tactacaagg ctgcgaggtg
     2461 tgactgctgt aaatctcaag gcactctgaa agagcgagtg cagtggcgtg gcgaaatgaa
     2521 acacttctgt gatcaacact gcttactacg tttctactgt cagcaaaatg agcccaacat
     2581 gacaacccaa aaaggacctg aaaacctaca ttatgatcag ggctgtcaga cgtcccgaac
     2641 caaaatgaca ggctcagcac cacccccttc tcctacacca aacaaagaga tgaagaacaa
     2701 agcgattctt tgcaaacctt taacaatgac aaaagcaact tactgtaagc ctcacatgca
     2761 gaccaagtct tgtcagacag atgaaaattg gaagacagag tatgtcccag tgcctattcc
     2821 tgtgcctgtg tatgtccctg tgcctatgca catgtacagc cagagtattc ctgttcctac
     2881 cacagtccct gtccctgtgc ccgttcctgt gtttttgcct gctccattgg agaacagtga
     2941 gaagattcct gcctcagttg aggacctcaa aagcaaagtg tcttcagatc ctcttgatac
     3001 agaattgctt acaatgacgg atatgatgac tgaagaggag gggaaaacag aggcatctaa
     3061 tatcaacagt gtaattattg agacagacat aattggctca gatcttacaa agaactctga
     3121 ctcagatata caatccaaca tgcccgatgt accatatgaa ccagatttgg atattgaaat
     3181 agatttcccc agagctgcag aggaacttga tatggaaaat gagtttttat taccaccagt
     3241 ttttggggaa gaatatgagg agcagcccag acctcgatct aaaaaaaagg gaaccaagag
     3301 gaaagctgta tcaggatatc aatctcacga cgacagttct gacaattcag agtgcagctt
     3361 tcctttcaag tatacgtatg gtgtaaatgc atggaaacac tgggtcaaaa cgaggcagct
     3421 tgatgaagat cttctggaat tagatgagct aaagtcctcc aaatcagtaa agttaaaaga
     3481 agatctactc tctcatacta cagctgagct caactatggc ttagcccatt ttgtcaatga
     3541 gatccgacga ccaaatggag agaattatgc ccctgacagc atctattatc tctgccttgg
     3601 aatacaggag tacttatgtg gtagtaatcg aaaggacaac atatttattg atccaggata
     3661 ccagatgttt gagcaagaac tgaataaaat actccgaagt tggcaaccaa gcatacttcc
     3721 agatgggtca atattctctc gagttgaaga agactatctc tggaggataa aacaactagg
     3781 atcccactct ccagtagcac ttttgaacac cctattctac tttaacacta aatattttgg
     3841 cctgaaaaca gtggaacaac acttaagact ttcctttggc actgtgttta ggcattggaa
     3901 aaaaaatcct ttaacaatgg aaaataaagc gtgtcttcgc tatcaggtgt cttccttgtg
     3961 tggaacagac aatgaagata aaattgctac tgggaagcgg aagcatgaag atgatgagcc
     4021 ggtatttgag caagttgaga acacagccaa cccttccaga tgtcctgtga aaatgtttga
     4081 atgctacttg tctaaaagtc cacagaatct taatcagaga atggatgtat tttatttgca
     4141 accagaatgt tctagttcta cagatagccc tgtctggtac acatctgctt ccctggaccg
     4201 gaacaccttg gaaaatatgc ttgtacgggt tcttctagta aaagatattt atgataaaga
     4261 caattatgaa ctggatgaag acacagacta aaaaggacca tttcagaagc aatgggataa
     4321 cacagcatta gatagtcatg ctgctagatc tttacaggaa aacatttcaa gtttactcct
     4381 tctgttctga gttttgtagc aatgtgccca cactgggtat caccatgtaa ataatctgtg
     4441 agtggaagtt gccattcttc tatgtagtgg ttttaggata cttaacgaat acatcaaatt
     4501 cttttttatt attatttatt tgattaggta tgtttgtaac tttttacatt acaaatatga
     4561 agagaatgtg ccatgtataa gttttcttgt tgcactgctc tactgttgca aagctccctc
     4621 cgaaaggtgt gctcttactg cgttcttgac cagatggttg tgtatgggta gcactactca
     4681 agtttagaac ttgcggtgtc tttcagaatt tttaaaataa actgtaaact aataggctgg
     4741 gttttttgtt ttgtttgggt tttttgtttg tttgttttat ggttttatgt tttagttact
     4801 gaagccttac caggttatgt agagaggtaa catcttctgt accaaaaata gacaagagaa
     4861 tgctgtggat actggtgttc tgtaatgtga acttatgctg gtgaaaacaa ctttatgttc
     4921 cccttattaa aacttagtgt ccttttctca cttgtgactt tctgcatcac cccatcaatt
     4981 taagggaaaa aaatatgtat atatgtgtaa gtagagagag agagtgagag agagagaatg
     5041 actataactt gaaaacaaga ttaagacatt gttctttgta aatgcccggt gacagtatga
     5101 ctttgctttt ctttttccat gccaaccatc agtatatgaa acccttcccc cattaagggt
     5161 acagatcatg ctgcattacg actcgcatag cactctcaag ttttactgct cttactagaa
     5221 ttcttgtgcc tgcttctaga aatgacatgc atttgtgggg cagaattatt tttagaaatg
     5281 ccactcctga aatagtcatt ttagaaagtc aagctacttg aggggagata gtgtcacatt
     5341 gtcctacaga tattgccagt ggagaacgct gattaatcca ggtgattgaa gaaacaaaag
     5401 ctggtggatg aagtcagttt cagaggaaat tgtacttgga attaggttgt ttggctttga
     5461 aatttaaatt acttcttata gaagatacat ttaaaatacc tttgtgcttc tgcatagcag
     5521 tttatctgtt cataactttt agattaagga aatctacttc aaattatact ttctaaagat
     5581 tgagtaaagt ggtatctgaa aattatcagt tatttagctg actttgtgta gcatgtgtga
     5641 tgttgctttc ttaattctga atcctgaaat caccacggtg atactagttt tcaaatagct
     5701 ctgagggaac tggcctgctc tccatagtga ctaggtagta gtacctacag cccgtctgtt
     5761 tctctctcct tcagcgcagt aaagacgttg tctcaatcat ggttttggaa atttcagagg
     5821 tatagccact gctcgcttaa gcaataacta tctgaaatgt tttcggcatg aaaatttata
     5881 gtgttctaag tttttgtaag tatgaatagt ttcagtccct tgaatcatca gactgacagt
     5941 agcaacccct tcctttacaa ggtagacctg cccctcacct gttaaaggaa tctggaaaca
     6001 caacaatgca gacgtttttt ggcttttcag tgctcctttt gaagcacgtt tactagaaat
     6061 gcatattgtg attaaagcct ggttaatcct aaccgtcttc tattcttcag agtggtgcta
     6121 tagcccatca aaaaagcaat aaacttaccc acaaatgtca catgtatatt ttaccaaata
     6181 ccataaattc tgccgtggta ctactaagca ccgtgtctcg ctatttagtt tttattgttt
     6241 gtacatttta gcttttctaa gcagaaatgc tgcagaattt tgatcataca tgatagagga
     6301 tttagaactt gtctttgtct catgcaatcc aatgactgat ctatttgatt ctcaggggga
     6361 aagagaaaca aactatttta tgagaattgt tctgggaaat gtattcacct ggaacacatt
     6421 tccttggttc ttggctggcc ttacagagcg gccataactg actgctgaga gacaggacat
     6481 tgaaatgata gtttattttt acttctcggt ggtttctgat tacagacagc atcctgtaaa
     6541 tataacttta ttgtcttgag atgtctattg aagattacta tatttttctg ttttgaacga
     6601 ttttgccact taaaatcgtt cagtgcaaaa gatgactagc tattctgagg caggtggatt
     6661 tcccatgcaa actgaatcct caacgcattt cagaaggctt ttactgtatt aggtaacatg
     6721 agatattaaa ggatttttct aggcaagatg ctcagccttt ttttttcccc ccataaaagt
     6781 acttttactc aaa
//
