LOCUS       NM_001135582            1809 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus zinc finger, matrin type 2 (Zmat2), mRNA.
ACCESSION   NM_001135582 XM_001054881
VERSION     NM_001135582.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1809)
  AUTHORS   Rotwein,P. and Baral,K.
  TITLE     Zmat2 in mammals: conservation and diversification among genes and
            Pseudogenes
  JOURNAL   BMC Genomics 21 (1), 113 (2020)
   PUBMED   32005145
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1809)
  AUTHORS   Bertram,K., Agafonov,D.E., Dybkov,O., Haselbach,D., Leelaram,M.N.,
            Will,C.L., Urlaub,H., Kastner,B., Luhrmann,R. and Stark,H.
  TITLE     Cryo-EM Structure of a Pre-catalytic Human Spliceosome Primed for
            Activation
  JOURNAL   Cell 170 (4), 701-713 (2017)
   PUBMED   28781166
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000018.1.
            
            On Oct 2, 2008 this sequence version replaced XM_001054881.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643284.19633.1,
                                           SRR26643429.53906.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-18                JAXUCZ010000018.1  28683617-28683634
            19-112              JAXUCZ010000018.1  28683966-28684059
            113-236             JAXUCZ010000018.1  28684723-28684846
            237-310             JAXUCZ010000018.1  28685931-28686004
            311-456             JAXUCZ010000018.1  28686414-28686559
            457-1809            JAXUCZ010000018.1  28686900-28688252
FEATURES             Location/Qualifiers
     source          1..1809
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /map="18p11"
     gene            1..1809
                     /gene="Zmat2"
                     /note="zinc finger, matrin type 2"
                     /db_xref="GeneID:679898"
                     /db_xref="RGD:1583592"
     CDS             1..600
                     /gene="Zmat2"
                     /codon_start=1
                     /product="zinc finger matrin-type protein 2"
                     /protein_id="NP_001129054.1"
                     /db_xref="GeneID:679898"
                     /db_xref="RGD:1583592"
                     /translation="MASGSGTKNLDFRRKWDKDEYEKLAEKRLTEEREKKDGKPVQPV
                     KRELLRHRDYKVDLESKLGKTIVITKTTPQSEMGGYYCNVCDCVVKDSINFLDHINGK
                     KHQRNLGMSMRVERSTLDQVKKRFEVNKKKMEEKQKDYDFEERMKELREEEEKAKAYK
                     KEKQKEKKRRAEEDLTFEEEDEMAAVMGFSGFGSTKKSY"
     exon            1..18
                     /gene="Zmat2"
                     /inference="alignment:Splign:2.1.0"
     exon            19..112
                     /gene="Zmat2"
                     /inference="alignment:Splign:2.1.0"
     exon            113..236
                     /gene="Zmat2"
                     /inference="alignment:Splign:2.1.0"
     exon            237..310
                     /gene="Zmat2"
                     /inference="alignment:Splign:2.1.0"
     exon            311..456
                     /gene="Zmat2"
                     /inference="alignment:Splign:2.1.0"
     exon            457..1809
                     /gene="Zmat2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggcgtctg gcagcgggac aaaaaacttg gactttcgcc gaaagtggga caaagatgaa
       61 tatgagaagc tcgcggagaa gagactcaca gaagagagag aaaagaagga tggaaaacca
      121 gtgcagccag ttaagcggga gcttctacgg cacagggatt acaaggtgga cttggagtcc
      181 aagcttggga agacaattgt tatcaccaag accaccccac agtctgaaat gggaggctac
      241 tactgcaatg tctgtgactg tgtggtgaag gactccatta acttcctgga tcacattaat
      301 ggaaagaaac atcagcgaaa cctgggtatg tctatgcgcg tggaacgttc cactctggat
      361 caggtaaaga aacgttttga ggttaacaag aagaagatgg aggagaagca gaaagattat
      421 gattttgagg aaaggatgaa ggagctcaga gaagaggagg aaaaggctaa agcatacaag
      481 aaagagaaac agaaggagaa gaaaaggagg gccgaggagg acttgacttt tgaggaggag
      541 gatgaaatgg cagctgtgat gggcttctct ggctttggtt ctaccaagaa gagttactga
      601 agcgttctct gtggcctaac tttggccttt actggaccta actttgagtg tgtgttgagg
      661 tggggtgggg gtgtcatttc ttttttgggt actggagaag gtccttaaga gtgttaatgg
      721 gcagggctag agggtgggtg tttgtggttt ccctctacgt taggagaggg cacaggatgt
      781 agaggagacg ctgtggcgta ttccttctgc ctcagtacat tactggagtc acagaacctc
      841 tgcccgtctg tgttcccaat aaagaaagat ctccctcttt gagactgctt tccccaaatt
      901 cccctgcatc tttccctctt catctttcca ccttttgtct gaacatcctc ctttttcctg
      961 tgtcctgcta ttgttttaat ttttactttt gttcagcttg caacagaagg gttttctgag
     1021 tctccagtat gcaggtgctg gcatatcctt ggcccagctc ttcctcccat cccacccagc
     1081 ggttctctac ccacttgtgc atgcatgtga tttctgcctg ggtcaatgtg tgtgtgggta
     1141 tgtgtgcatg atgtgtcaca aagaggggac ctgggctaga atctcagagc attgttgccc
     1201 tgagacctaa tgttcttggt ttcctcggtg catgtaacag gatattaaat gggatgagtg
     1261 tttggtgtgg tttgtgtctg gtgagttttt aaccttgttt cttccgtttc acttcattga
     1321 ggatttctgg ttttgtcttc cttgggaatg gttcttggaa gaacctgttt gatgcaaaaa
     1381 agaaagcaac aaaacaaccc taaaaccaaa caaagaaact catgcgggga gaccccggtt
     1441 ctcagacact gttcaacatg tacaataaat gacagtgatg aggcctgctt cacatttgtt
     1501 gggaacatgt ccatatcatt ccctgcccca cacattccta caccaagaat ttctatagag
     1561 cctttctata gagcctttca acacccctcc ccccttacat agaggtttcc ttagtgtgag
     1621 tttttccctc tgcagatagg cacaggatct gtgcccttgg gagtccaaac aaaacatttc
     1681 agtcccctat aattttcgtc ccctctgatc ttcctaggag aactcagggt taaacttaac
     1741 tatctgcact tgggcgggca cttgactctg cttgcctctc cagtgttgag attaaaggtg
     1801 tgccctcca
//
