LOCUS       NM_001170577            4838 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus zinc finger with KRAB and SCAN domains 7
            (Zkscan7), mRNA.
ACCESSION   NM_001170577
VERSION     NM_001170577.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4838)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 4838)
  AUTHORS   Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
            Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
            B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
            Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
            GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
            Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
            Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
            SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
            Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
            Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
            Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
            Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
            Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
            Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
            Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JACYVU010000200.1.
            
            [WARNING] On Apr 1, 2024 this sequence was replaced by
            NM_001170577.3.
            
            On Feb 10, 2021 this sequence version replaced NM_001170577.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments and orthologous data.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132291,
                              SAMD00132292 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-228               JACYVU010000200.1  25461001-25461228
            229-752             JACYVU010000200.1  25462561-25463084
            753-918             JACYVU010000200.1  25465652-25465817
            919-992             JACYVU010000200.1  25467274-25467347
            993-1086            JACYVU010000200.1  25467645-25467738
            1087-4838           JACYVU010000200.1  25474632-25478383
FEATURES             Location/Qualifiers
     source          1..4838
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q32"
     gene            1..4838
                     /gene="Zkscan7"
                     /gene_synonym="Zfp167; Znf167"
                     /note="zinc finger with KRAB and SCAN domains 7"
                     /db_xref="GeneID:363170"
                     /db_xref="RGD:1305242"
     exon            1..228
                     /gene="Zkscan7"
                     /gene_synonym="Zfp167; Znf167"
                     /inference="alignment:Splign:2.1.0"
     exon            229..752
                     /gene="Zkscan7"
                     /gene_synonym="Zfp167; Znf167"
                     /inference="alignment:Splign:2.1.0"
     CDS             345..2516
                     /gene="Zkscan7"
                     /gene_synonym="Zfp167; Znf167"
                     /note="zinc finger protein 167"
                     /codon_start=1
                     /product="zinc finger protein with KRAB and SCAN domains
                     7"
                     /protein_id="NP_001164048.1"
                     /db_xref="GeneID:363170"
                     /db_xref="RGD:1305242"
                     /translation="MTMEGRGTLDIIPRTAVYQKQEGSLTVKQEPGSQTWGQKNCPPV
                     CEIFRLHFRQLCYHEMSGPQQALSRLRELCHWWLMPEVHTKEQILELLVLEQFLSILP
                     RELQTWVQLHHPETGEEAVAVVEDFQRHLSESGEVSPPVQEQDVHLKKMVALRATEQS
                     PTLTSGCCSAPDDLLNPPCDPGAHHFPSGHFDPAFPRVGNSRAQAVASVLRMVRPQET
                     AVNKACMQEKWSVLCEAEVVRDEHGPAYLGKNRMGSSEYSPKQGISKGSHSLDTSSGG
                     LFGVALVEPESGDICEDPLAQVEGCPSDEGSELESDFLEKNDEKNSTKDRIEDSKDVR
                     ERPESPSSPAEHQREAKRQNSYQCDECGKIFNRSSHLLGHRRIHTGERPSECNECGKT
                     FLQTSQLIVHLRTHTQEKPYECQESGKTYCHSSRLIQHQRLHNGEKPYKGNECVKASI
                     QSSQLIDHKGAHAAEKPNESEEAFIWSKSLQHQVLHTSKKPYECNECGKAFCSNRNLT
                     DHQRIHTGEKPYECIECGKAFSRSKCLTRHQSLHTGEKPYKCSECGKAFSQNSQLIDH
                     ERIHTGEKPFECSECGKKFSLSKCLIRHQRLHTGEKPYKCSECGKSFNQNSHLIIHQR
                     IHTGEKPYGCNECGKVFSYSSSLMVHQRTHTGEKPYKCKDCMKSFGDSSQLIVHQRVH
                     TGEKPYECIECGKAFSQRSTFNHHQRTHNVEKPSSLLQTVS"
     exon            753..918
                     /gene="Zkscan7"
                     /gene_synonym="Zfp167; Znf167"
                     /inference="alignment:Splign:2.1.0"
     exon            919..992
                     /gene="Zkscan7"
                     /gene_synonym="Zfp167; Znf167"
                     /inference="alignment:Splign:2.1.0"
     exon            993..1086
                     /gene="Zkscan7"
                     /gene_synonym="Zfp167; Znf167"
                     /inference="alignment:Splign:2.1.0"
     exon            1087..4838
                     /gene="Zkscan7"
                     /gene_synonym="Zfp167; Znf167"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gccattgttg ccatttctta gtgtcctgga ggtgtgtggc gctggtgagc catcgcgcat
       61 gcgggtggcg acgcggtggg aagtgcggcc cgcactcggg gcgcgacacc ggcagagccg
      121 gggtgcttgc ccgaggcgga gcctcctcgc gctcgggtcg cttggcttgg ggtcggctcg
      181 ggttgttggc gcccgtgcgt cagcgctgca cgggtcagac gcggccaggt gacactctcc
      241 tcacctcctt tcttgactct gaaaaacagt tcctgcagct tgaagcagag actcatttcc
      301 agtgtgcctg ctgtagctgg gaccagcttc tctctgggat cacaatgacc atggaaggca
      361 gggggacact agatatcatc cccaggactg cggtgtatca gaagcaggag gggagcttga
      421 ctgtaaagca ggaaccagga agccagacct ggggacagaa gaactgccct cctgtctgtg
      481 aaatattccg actgcacttc aggcagctgt gttaccatga gatgtctggc cctcagcagg
      541 ccctgagccg gctcagggag ctctgccact ggtggctgat gccagaggtc cacaccaagg
      601 agcagatcct ggagctgctg gtgctggagc agttcctgag catcctgccc agggagcttc
      661 agacctgggt gcagctgcat caccccgaga ctggcgagga ggctgtggcc gtggtggagg
      721 atttccagag acaccttagt gagtcagggg aggtttcacc tccagtacaa gaacaggatg
      781 tgcatttaaa gaagatggta gctctgcgtg ccacagagca gtcgcctacc ttaacctctg
      841 gttgttgctc agcccctgat gacctcttga atcctccctg tgacccagga gcacaccact
      901 tccccagtgg acacttcgat cctgcttttc ccagagtggg gaactccaga gcccaggcag
      961 tggctagtgt gcttaggatg gtcaggcctc aggagactgc agtgaacaag gcctgtatgc
     1021 aggaaaagtg gagtgtcctg tgtgaggcgg aggtggtgag agatgagcac ggcccggcct
     1081 atctgggtaa gaacaggatg ggaagttctg agtacagccc caagcagggc atttctaaag
     1141 gatcacattc acttgacaca tcctcaggag gactctttgg agtggccctg gtagaaccag
     1201 agtctggaga tatctgtgaa gaccctttag cacaggtgga agggtgtccc tcagatgaag
     1261 gcagtgaact agaaagtgat ttcctggaaa agaatgatga gaaaaattcc accaaagaca
     1321 gaatcgagga cagtaaagat gtaagggaac gtccagaatc gccctccagt cctgctgagc
     1381 atcagagaga agccaagagg cagaattcct atcaatgtga tgaatgtggc aaaattttta
     1441 accggagctc acacctcctt ggacatcgga gaatccacac tggagagaga ccctctgaat
     1501 gtaatgagtg tgggaagacc ttcctacaga catctcagct aattgttcac ctcagaacac
     1561 acactcagga aaaaccttat gaatgtcaag agtctgggaa gacttattgt cacagttccc
     1621 gtcttattca acaccagaga ctccataatg gggagaaacc ttataaaggt aatgaatgtg
     1681 taaaagcttc cattcagagt tcccagctca tagaccacaa gggagcccac gctgcagaga
     1741 aacctaatga gtctgaagag gcattcattt ggagcaaaag tctccaacat caggtccttc
     1801 ataccagtaa gaagccctat gagtgtaatg aatgtgggaa agccttctgt tccaacagaa
     1861 atcttactga ccaccagagg atccacactg gggagaagcc ttatgagtgc attgagtgtg
     1921 gcaaggcctt tagtcggagt aagtgtctta ctcgacatca gagtctccac actggggaaa
     1981 aaccatacaa atgcagtgaa tgtgggaaag ccttcagtca gaactctcag ctcattgacc
     2041 atgaacgaat tcacacaggt gaaaagcctt tcgaatgtag tgagtgtggt aagaaattca
     2101 gtttaagtaa atgccttatt cggcaccaga gacttcacac tggagaaaag ccctacaaat
     2161 gcagtgagtg tggaaaatcc ttcaatcaaa attctcacct cattatacac cagagaattc
     2221 acactggtga gaaaccttat ggatgtaatg aatgtgggaa ggtcttcagt tatagttcta
     2281 gccttatggt gcatcagaga acccatactg gtgaaaagcc ttataaatgt aaagactgca
     2341 tgaaatcctt tggtgacagt tcacagctta ttgtgcacca gagagttcac actggtgaga
     2401 agccttatga atgtattgaa tgtgggaaag cctttagtca gcgttccacc tttaaccacc
     2461 atcagcgaac tcacaacgtg gagaagccct caagtctgct tcagacagta tcctaaggca
     2521 tggtttcctg ggacagagaa taatgaattc tgacttggtt tgtttagaca aaggaagcca
     2581 ggcagtggtg gtgcatgtct ttcttcccag cacttgagag gcaggtgcag agaaaccttg
     2641 tcttgaaaag ccaaaaaaaa aaaaaaaaaa aaaaaaaaaa aggatattta ttttactctc
     2701 tttcaaaaga gtgctttcta tttggtcact aaggcaggag aataataata acttagtaaa
     2761 gtccttcctt ccttactgct ggaaaagtaa aaaccacata ttatcacata tttttattta
     2821 cttctagctt tttctttttt aaaactatct taaaacgtgt ttcattttta aattttgctt
     2881 tccacaattt gcgattttca ggcacagtga taatacctcc tctacttcat tctaacctct
     2941 gcacttcatc ctttatttaa agactttctg taagactctc atcactctta cttcttgcct
     3001 atagctctct gcacttattt tgccccttca tactttttat atgtgtgggt gaataccact
     3061 taggtgcctg gcatctacag aagaggtcat cagagcccct ggaaccggac ttagagctgt
     3121 cagccaccgt gtgacagtgg ggatcaacca gagtcctctg gctgaactac cgagccatct
     3181 ctccagcctt cacatttgtt ttttaaagtt agtccagttt agagcttatc acttaaatcc
     3241 ccctccccag aaaaaaaatt ccctttgtta gtgtttcttc atagccttga agatctgtcc
     3301 ggtttaagga cttttaatgt tttgtttatt tttaaatgga atatatttat aatgtctgta
     3361 cctgtgagtg cactggttct agaggacagg agagggcatt gggtccccta gagctgtgga
     3421 ttgtgaggta cctgacatgg gtgctgggaa ctgaacttgg gtcctctgta ataacagtac
     3481 atattcttaa ccactgagcc atctctccag ccccaggact tttttcttta catgcttttc
     3541 ttttaaacct ctgttgatct aatttcaatg ctttggtaca actgttaaat tcccttgtaa
     3601 gtatttatac actttaacac tagcgtgtag gctcattgtg ggtatatatt tttcatacat
     3661 aggtagttgt actgattact aaataggttt taaatctttg cccaaataat ccttaaatta
     3721 gggacatact cccctctccc ccaagctttt aaggtgagag gtgcatctgc agtctcacat
     3781 accccaaaac ccattaatgt tgtctatatc tactctattg gtttattgtc cttaaaaggc
     3841 taagtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtaacagag
     3901 acagcacata tttgtatcta ttcagctgtg cactcgtgac cctcttagat gtgcattgtg
     3961 ctgcacactg acttgctaaa cacattctgg ctcttcagtg agcagattga gaccacagtc
     4021 agaatttacc aaaaggcttg ttgatgtcat ggctgcactg gggttatggg catacgctgc
     4081 catgaattct gtgtgtattc tggagatgtg cattcaggtc ctcgtgccag gtggcataca
     4141 ctctgcctac tgagccatct ctccagacct tgcatacaca cattttcagg aaataatctg
     4201 aaagaaaatg tggggaaatt ttctattcta atatacagtt attggcccct caggtatctg
     4261 tgatgtagaa aagcagtctt aatctcgata tggtagcaca tgcctatgat cctagcattt
     4321 gggaagcaga gacagatctt tgtgaattca aggtcaactt agacttcata gcaagttcca
     4381 gaccaaccat gttgaatcac tgtcttcaaa ggaggtgtga agttaggtat gactttactt
     4441 aggtgtcttt ttttttaagt tatattttac attcatgtgc ttgtacccat ggagattaca
     4501 ggacagcttg tgggagttgg ttctgtcaac caagtagatc cctcagatca aagtctgaag
     4561 ttgggttatc aggcttggca acaagtgcct tcacctgctg agccatttca cttacttagt
     4621 ttttagaaac tacccactca cacagggaca tattgtggga cacactgtga cagaccacag
     4681 cttccagaat gagatgtttt ctaggctttg ttgttcgttt tttattttgg gtcaggggag
     4741 gctgcaaggg tgaagggtga acatggggat ggaaatgaat gggataggag tgcataatgt
     4801 gaaactcaca acgaatcaat aaagttttta aaagtcta
//
