LOCUS       NM_001107119            3782 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus zinc finger with KRAB and SCAN domains 5
            (Zkscan5), mRNA.
ACCESSION   NM_001107119 XM_001070925 XM_221910
VERSION     NM_001107119.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3782)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 3782)
  AUTHORS   Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
            Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
            B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
            Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
            GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
            Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
            Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
            SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
            Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
            Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
            Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
            Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
            Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
            Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
            Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474012.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001070925.1, XM_221910.4.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMD00132261, SAMD00132262
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3782
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12p11"
     gene            1..3782
                     /gene="Zkscan5"
                     /gene_synonym="Zfp95"
                     /note="zinc finger with KRAB and SCAN domains 5"
                     /db_xref="GeneID:304275"
                     /db_xref="RGD:1311175"
     exon            1..1101
                     /gene="Zkscan5"
                     /gene_synonym="Zfp95"
                     /inference="alignment:Splign:2.1.0"
     CDS             694..3162
                     /gene="Zkscan5"
                     /gene_synonym="Zfp95"
                     /note="zinc finger protein 95"
                     /codon_start=1
                     /product="zinc finger protein with KRAB and SCAN domains
                     5"
                     /protein_id="NP_001100589.1"
                     /db_xref="GeneID:304275"
                     /db_xref="RGD:1311175"
                     /translation="MTESRAVVHLEPPAETSQEQADLLIVKVEEEDCSWMQRYNRPVL
                     ETFYQRFKHFQYHEATGPRDALSQLRVLCCEWLRPELHTKEQILELLVLEQFLTILPE
                     EFQAWVREHHPESGEEAVAVIESIQRELEERRQQIVTCPEVLPQKMVPPGATQESSSH
                     QFLPVEAQSDQEPQNLLEENALPVLQVPSVPLKDSQEPTASLLSAGPQKLVKIEDVAD
                     VAVSFILEEWGHLDQSQKSLSRDGRKEDCERTTPVDYEPKEGNLELVVQQVSDAVDPH
                     WVAAESTEQNSVQPQESAEVSDLKDTVQRWQVNPTWRNPRPKRSLSSGLDVNRKQKSN
                     GERGHRCGDCGKFFLQASNFIQHRRIHTGEKPFKCGECGKSYNQRVHLTQHQRVHTGE
                     KPYKCQVCGKAFRVSSHLVQHHSVHSGERPYGCSECGKSFGRHSHLIEHLKRHFREKS
                     QRCSDRRSKDTKLNVQQIPGLSEADVEPSGEVQRNACEAEGHSEGCEYQDGAGGQEGV
                     IMKETLGQSSSKRTDCNELSYVHKKPSPGERPHKCNECGKSFIQSAHLVQHRRIHTGE
                     KPFRCEECGKSYNQRVHLTQHHRVHTGEKPYACHLCGKAFRVRSHLVQHQSVHSRERP
                     FKCNECGKGFGRRSHLAGHLRLHSRDKSHQCHECGEIFFRYVSLLEHQMLHVGQKSGN
                     NSVCEEAHSWNLTVMEDKKLELQGEQSPYQCDTCGKAFSYTSDLIQHYRAHSAEKPQK
                     CDACRDSTSQCPHRRQPQKICPSGKSHQCSECGRGFGLKSHLSQHQRVHTGEKPFQCK
                     ECGMKFSWSCSLLKHLRSHERTDP"
     exon            1102..1234
                     /gene="Zkscan5"
                     /gene_synonym="Zfp95"
                     /inference="alignment:Splign:2.1.0"
     exon            1235..1317
                     /gene="Zkscan5"
                     /gene_synonym="Zfp95"
                     /inference="alignment:Splign:2.1.0"
     exon            1318..1453
                     /gene="Zkscan5"
                     /gene_synonym="Zfp95"
                     /inference="alignment:Splign:2.1.0"
     exon            1454..2050
                     /gene="Zkscan5"
                     /gene_synonym="Zfp95"
                     /inference="alignment:Splign:2.1.0"
     exon            2051..3782
                     /gene="Zkscan5"
                     /gene_synonym="Zfp95"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ttgtgagaac tccatcttcc aagcctaggc tgcggggagt ttgagctttg ggtccccggg
       61 acttagagac tggagaggag ccggtagggc acacagggtc ctgtccctaa ccttgacgcg
      121 gccggtctgt ctctcccggt caggcgctat tccgaagaat ccaggtccga atttctgagt
      181 ataaccgtgc ttctcctaga actaatgaag tcttccgttt atctgtcaag cccttatggc
      241 ttgaaagcca gaacgagata tgaccatttt aatggttttc actcctattc tgacttaagt
      301 ttggcttatg atcgagagaa gaaacgactc tatctggaat aatcttattc cattatttat
      361 atgagatgtg gactttttca tttctaaaac ttttaagttt ggcctgatgt cactttttaa
      421 tggccatttt tttttgcgtt attaaaatcc ggacatagtc actattagtt gttttatgag
      481 tgaagcgatg actaacttgt agtcaatatc ttaaagtgaa tgacattgtt gagtggtttt
      541 ctttagtgta gatgacgtcg ttgccacctc tcttggctaa taataatttc cgacatacca
      601 gtaaggttgt tcactgcaaa aagtgccctt tagaagagca gagaacgatt tgggttagtg
      661 cgggcagact ctggagactg agttggaagg ataatgacag aatccagggc agttgtacac
      721 ttagagcctc ccgctgagac ttcccaagag caagcagacc ttctcatagt aaaagtagaa
      781 gaagaggact gttcctggat gcagagatac aaccggccag tgcttgagac tttttaccag
      841 cgcttcaagc acttccagta ccacgaggca acagggcccc gcgatgctct cagccagctc
      901 cgggttctct gctgcgagtg gctgaggccg gagctgcaca ccaaagagca gatcctggag
      961 ctgctggtgc tggagcagtt cctcaccatc ctgcctgaag agtttcaggc ctgggtgaga
     1021 gaacatcacc ctgagagcgg agaagaagcc gtggctgtga tagagagtat ccagagagaa
     1081 ctggaggagc gcaggcaaca gattgtcaca tgtcctgaag tacttcctca gaagatggta
     1141 ccacctggag ccacgcagga gtcctccagt caccagtttc tgcctgtgga ggcccagtcg
     1201 gatcaagagc cacagaatct tctggaggag aatgcccttc ctgttctcca ggttccttcc
     1261 gttcccttga aggacagcca ggagccaaca gcttcactcc tctcagcagg gccccagaag
     1321 ttggtgaaaa ttgaagacgt ggctgatgtg gctgtgtcct tcatcctgga ggaatgggga
     1381 catttggacc agtcccagaa gtctcttagt agggatggca gaaaggaaga ttgtgagaga
     1441 accactcctg tggattatga acccaaggag ggcaacctag agcttgtggt gcagcaggtc
     1501 tccgatgcag ttgacccaca ctgggtggcc gcagaaagca cggaacagaa cagtgttcag
     1561 cctcaagagt ctgcagaagt cagtgacttg aaggacacag tgcagagatg gcaagtgaat
     1621 cctacttgga ggaatccaag gccgaaaaga tctctgagct caggcctgga tgtcaaccgg
     1681 aagcagaaat cgaacggcga gcgaggccac agatgcggtg actgcgggaa gtttttcctc
     1741 caagcctcaa acttcattca gcaccggagg atccacacag gagaaaaacc gtttaaatgt
     1801 ggggagtgtg gcaaaagcta taatcagcgg gttcacctca cccagcacca gagagtccac
     1861 actggcgaga agccctacaa gtgccaggtg tgcgggaaag cgttccgagt gagttcccat
     1921 ctggtgcagc atcacagcgt ccacagcggg gagaggccat atggctgtag cgagtgcggg
     1981 aagagctttg ggcggcactc tcacctcatc gagcacctga agcgccactt cagagagaaa
     2041 tcccaaagat gcagcgacag aagaagtaag gacaccaaac tgaatgttca gcaaattcca
     2101 gggctttcag aagcagacgt ggaaccatcg ggagaagtcc aaaggaatgc ttgtgaggcc
     2161 gaaggtcaca gtgaaggctg tgaataccag gacggggcag gtggacagga gggggttatc
     2221 atgaaagaaa ccctaggaca atcctcttca aagaggacag actgcaatga actcagctat
     2281 gtccacaaga agccctctcc aggagagagg ccacacaaat gtaacgaatg tgggaaaagc
     2341 ttcatccaga gcgcacacct cgttcagcat cggagaatcc atactgggga gaaaccattc
     2401 aggtgtgagg agtgtggcaa aagctacaac cagcgtgtcc acctcactca acatcaccga
     2461 gttcacacgg gcgagaagcc ctacgcctgt cacttatgtg ggaaagcctt ccgagtgagg
     2521 tcccaccttg ttcagcacca gagtgtgcac agcagggaga ggcccttcaa gtgcaacgag
     2581 tgtgggaagg ggtttgggag gcgatcacat ctggccggtc acctccgact ccactctaga
     2641 gataagtccc accagtgcca cgaatgtgga gagatcttct tccggtacgt cagcctcctt
     2701 gaacaccaaa tgctccatgt gggccagaag agcgggaaca acagtgtgtg cgaagaggcc
     2761 cacagctgga acctgaccgt aatggaagat aagaagctag agttacaggg ggagcagtct
     2821 ccctaccagt gtgatacctg tgggaaagcc tttagttaca cgtccgacct catacagcac
     2881 tacagagctc actctgcaga gaaaccccag aaatgtgatg catgcaggga cagcaccagc
     2941 cagtgtccgc acagaagaca gccacagaaa atctgcccca gcgggaaatc ccatcagtgc
     3001 agtgagtgtg gaaggggctt cggtctgaag tctcatctca gtcagcatca gagagtgcac
     3061 actggcgaga agcccttcca gtgcaaggag tgtggaatga aattcagttg gagctgtagc
     3121 ctcctcaaac atctgcgaag ccacgagagg acagacccct aaagctccgg cagcatacag
     3181 gaatctgttg ggaggcaacc tgatttcaga gaagccttcc atggccctca taagtgtagc
     3241 atcaaaaatg tttccctctt agctatcaga cctacaggtg tggggaaacc ctgttaggta
     3301 gagcttagcc ttcagggaca ctggagagcc actgggtgct cccatagcag ctttacgctc
     3361 ggaacctctg gctaggcgtg gcggtgctcg cctgtatgcc tcggaggcag aggcaggcag
     3421 atacctggtt tacatagaaa gttccaggcc agccagagct acatagtgag acccctgcgt
     3481 gagagacaga cagagagaga ccaagagaca gacagacaca cctctgggtt ctgtggatga
     3541 aggaaagtct tgacatggca ttgtttattt gaaactcaga aaaataacag aagagtcacg
     3601 aatgcagtag aaataagctt atttgtagtt tccacctcga cagcatagct attcagtgtc
     3661 gtgcctcaaa aggaactctt ctgagtgata cccatcttgg tacatctctg gaaacgactg
     3721 tcccaaccac tagaatactc cagccattgt cccatcctga gtattaaatc ttttgaaagg
     3781 aa
//
