LOCUS       NM_001012053            2588 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus zinc finger with KRAB and SCAN domains 3
            (Zkscan3), mRNA.
ACCESSION   NM_001012053 XM_225355
VERSION     NM_001012053.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2588)
  AUTHORS   Chauhan,S., Goodwin,J.G., Chauhan,S., Manyam,G., Wang,J.,
            Kamat,A.M. and Boyd,D.D.
  TITLE     ZKSCAN3 is a master transcriptional repressor of autophagy
  JOURNAL   Mol Cell 50 (1), 16-28 (2013)
   PUBMED   23434374
REFERENCE   2  (bases 1 to 2588)
  AUTHORS   Yang,L., Zhang,L., Wu,Q. and Boyd,D.D.
  TITLE     Unbiased screening for transcriptional targets of ZKSCAN3
            identifies integrin beta 4 and vascular endothelial growth factor
            as downstream targets
  JOURNAL   J Biol Chem 283 (50), 35295-35304 (2008)
   PUBMED   18940803
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC089847.1 and
            CK602433.1.
            
            On Apr 5, 2007 this sequence version replaced NM_001012053.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132261,
                              SAMD00132262 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-652               BC089847.1         1-652
            653-688             CK602433.1         643-678
            689-2588            BC089847.1         692-2591
FEATURES             Location/Qualifiers
     source          1..2588
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /map="17p11"
     gene            1..2588
                     /gene="Zkscan3"
                     /gene_synonym="Zfp307"
                     /note="zinc finger with KRAB and SCAN domains 3"
                     /db_xref="GeneID:306977"
                     /db_xref="RGD:1305753"
     exon            1..30
                     /gene="Zkscan3"
                     /gene_synonym="Zfp307"
                     /inference="alignment:Splign:2.1.0"
     exon            31..505
                     /gene="Zkscan3"
                     /gene_synonym="Zfp307"
                     /inference="alignment:Splign:2.1.0"
     CDS             89..1750
                     /gene="Zkscan3"
                     /gene_synonym="Zfp307"
                     /note="zinc finger protein 307"
                     /codon_start=1
                     /product="zinc finger protein with KRAB and SCAN domains
                     3"
                     /protein_id="NP_001012053.2"
                     /db_xref="GeneID:306977"
                     /db_xref="RGD:1305753"
                     /translation="MARESRESTTLDSHSAEDQMELLVIKVEQEEVSPLAEETSWLGS
                     PGPDRSRQRFRAFRYPDAAGPRQALSRLRELCRQWLRPDMHSKEQILELLVLEQFLTI
                     LPGELQAWVREQHPDSGEEVVALLEYLDRQLDETPPQVPDDDDGQELLCSKAVLLTSA
                     QGSESSQMESMEPLLKQESLGSLPSEVRVTQAGHCGEDGVTATRLTSELQGLLKMEDV
                     APGLSPRWTEQDSSQMNLYKDEMQENSGSLVSLDENMQTKVRDLPPAEENTEQKPEQT
                     VCFLGEDTVQIPTGTEASEQEGKLQTTQKNATGNRRFYCRECGKSFAQSSGLSKHKRI
                     HTGLKPYECEECGKAFIGSSALIIHQRVHTGEKPYECEECGKAFSHSSDLIKHQRTHT
                     GEKPYECDDCGKTFTQSCSLLEHHRIHTGEKPYQCNMCPKAFRRSSHLLRHQRTHTGD
                     KDFFVPEPYWESQSRVESHWENIETPVSYQCNDCERSFSRITSLIEHQKVHTGEKPFE
                     CQTCGKGFTRPSYLIQHQRRHTGKKTSVTVTPAVHSEVGVQLSLN"
     exon            506..653
                     /gene="Zkscan3"
                     /gene_synonym="Zfp307"
                     /inference="alignment:Splign:2.1.0"
     exon            654..718
                     /gene="Zkscan3"
                     /gene_synonym="Zfp307"
                     /inference="alignment:Splign:2.1.0"
     exon            719..842
                     /gene="Zkscan3"
                     /gene_synonym="Zfp307"
                     /inference="alignment:Splign:2.1.0"
     exon            843..2563
                     /gene="Zkscan3"
                     /gene_synonym="Zfp307"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcggggtgct acgaggtgct gcgttcgcgg tattttgcag aaatacaact cacaactaca
       61 ttgaaacagg agaactgctt ggttcgggat ggctagagaa tcaagggaaa gcacaaccct
      121 ggactcacac tctgcagagg accagatgga gctactggtc ataaaggtgg aacaagaaga
      181 ggtctcccca ttggcagagg agaccagttg gctgggcagt cctgggcctg accgctcccg
      241 ccagcgcttc cgtgctttcc gctacccaga cgcagcaggg ccccggcagg cgctgagccg
      301 gctccgcgag ctatgcagac agtggctgcg gccagacatg cacagcaagg agcagatcct
      361 ggagctgctg gtgctggagc agttcctgac catcctgcca ggggagctgc aggcctgggt
      421 gcgcgagcag caccccgaca gcggagagga ggtggtggca ctgctggagt acttggacag
      481 gcagctggat gagacccctc cacaggttcc agatgatgac gatgggcagg aactcctttg
      541 ttccaaggca gtactgttga catcagctca aggctcagaa agtagccaga tggagtccat
      601 ggagcctttg cttaaacagg aatctttggg atccctgccc tcagaagtta gagtcaccca
      661 ggcagggcat tgtggagaag atggagtgac agctaccagg ctcacatcag agctgcaggg
      721 gctgctgaaa atggaagatg tagccccagg cctttccccg agatggacag agcaggattc
      781 atctcagatg aacctctaca aagatgaaat gcaggagaac tctggcagcc tggtttccct
      841 ggatgagaac atgcaaacta aggttaggga cttgcctcca gctgaagaaa acacagaaca
      901 aaagcctgag cagacagtgt gcttcctggg tgaagacact gtccagattc ctacaggtac
      961 agaagccagt gagcaggaag gcaagttaca gacaacacag aagaatgcca cgggaaacag
     1021 gcggttctac tgccgtgaat gtgggaagag ctttgctcag agttcaggcc taagtaaaca
     1081 caaaagaatc cacactggat tgaaacccta tgaatgtgag gagtgtggca aagccttcat
     1141 tgggagctca gctctcatta ttcatcagag agttcacact ggtgagaagc catatgagtg
     1201 tgaagaatgt ggtaaggcct tcagtcacag ctcagatctc atcaagcacc agagaaccca
     1261 cactggagaa aagccctacg agtgtgatga ctgtgggaaa accttcactc agagctgcag
     1321 cctccttgaa catcacagaa ttcacactgg ggagaagcca taccagtgca acatgtgtcc
     1381 caaagccttt aggcgtagct cacatctcct gagacatcag aggacccaca ctggggataa
     1441 agattttttt gttccagaac cttactggga aagtcagagt agggtggaaa gccattggga
     1501 aaatattgag actcctgtgt cttatcaatg caatgattgt gagagaagtt ttagtaggat
     1561 tacaagcctt attgaacacc aaaaagtaca cactggtgag aagccctttg aatgccagac
     1621 ctgtggaaaa ggctttaccc gaccttcata ccttattcaa catcagagaa gacacacggg
     1681 gaagaaaact tctgtcacag tgacccctgc tgtacattcc gaagttggtg ttcaactgtc
     1741 attgaactga agccgctctg gagctcttaa tgactgcaga agtcataggc tagggctcta
     1801 tttaataatg tacatcctca gatattagga atctgactaa gacttattat cttctacatt
     1861 ctagaaggtg actataaaaa aaaacttatt tcataggaga gttgtctgca agagttctaa
     1921 cctattggaa ttaaatgggc ttcctgactg tcaaattgcc ttcccttggc ctgcacttcc
     1981 tgtctcttga gggaaaggtt atgctttttt tgggaggggt gggggtgggg gaagttactc
     2041 tgacccttct ttaggctaat gagcccttca cgtgtggtca gacttggaac tcttatgtcc
     2101 tgctttgtgc cttgtataca ggtgctaaca aacatttatt aaatatactg gtgagatttc
     2161 ctacatagct ctgaaaaccc attatctgga aattctcacc aaggccattt gtatatcttt
     2221 gaaaaaaaaa gataatgttt tagattgaat caatgtagta ctgctttgtt tttgtttttt
     2281 gccaagtacc ccaacttggc agggaagagg tgaaggtgag gttattgtgc tagaattctt
     2341 taactcttta cctaatttag gaattctgtg agagtgcctt aaatagcttt cttagcatta
     2401 agtcattgtg aatgtgccac ccatggaatt ccactaatat ttttttcctg ttaattttgt
     2461 tactcttgag agaacagaaa agaaaagaaa aagttaaaaa aaaaaaactt tcctactcat
     2521 gtagtgtgaa aatcagtttc agaataaagt gatcaatgtc taaaaaaaaa aaaaaaaaaa
     2581 aaaaaaaa
//
