LOCUS       XM_001079250            6998 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zinc finger with KRAB and SCAN domains
            2 (Zkscan2), transcript variant X1, mRNA.
ACCESSION   XM_001079250
VERSION     XM_001079250.7
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_001079250.8.
            
            On Jan 21, 2021 this sequence version replaced XM_001079250.6.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6998
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6998
                     /gene="Zkscan2"
                     /note="zinc finger with KRAB and SCAN domains 2; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 4 ESTs, 4 Proteins, and 99% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     32 samples with support for all annotated introns"
                     /db_xref="GeneID:368120"
                     /db_xref="RGD:1359568"
     CDS             661..3543
                     /gene="Zkscan2"
                     /codon_start=1
                     /product="zinc finger protein with KRAB and SCAN domains 2
                     isoform X1"
                     /protein_id="XP_001079250.1"
                     /db_xref="GeneID:368120"
                     /db_xref="RGD:1359568"
                     /translation="MATVINPQMDVEVEECLIMKVEKDSGWASEPILERSDSTECESF
                     RKCFRQFCYEDVTGPHEAFSKLWELCCRWLKPEMRSKEQILEQLVIEQFLTILPEKIQ
                     AWAQRQCPESGEEAVALVVHLEKETRRLRKQVSGPQHSEKQAPPRTVWEVANYEPEQL
                     ETQHRVVSREEAGNFHSGHQEQLNQKREHRPLPKNAHSSVWAPVPSSEWTAVDEEATT
                     QEPVRDIHTVRSFPYKRSVQQVPAHRDLYHEIRKESACSVVSLGDTVSAPNKIAQLEQ
                     KKEPWTVGLHSSNKRTSVLQSKISKEKSVHAVQIPARNAGKVWREQQQWGLEDEKIAG
                     VHWSYEETKTFLAILKESRFYETLQACPRNSQVYGAVAEWLRECGFLRTPEQCRTKFK
                     SLQKSYRKVRNGHMLEPCAFFEDMDALLNPEAHTSSTERPKAVISLPLKRTAVSAKEQ
                     VSLVEEEEGAEDSDGDEVGIEFVRKSEIRAAPILFQNLSGVHWGYEETKTFLDILQET
                     RFYEALQACHRKSKLYGVVAEQLRECGFLRTPEQCRTKFKSLQKSYRKVKNGHVLESC
                     AFYKEMDALVNCRTAALPTNTSEEIPSLSRQERGHIEVEPQEPTTWEPEESSQEAVLE
                     DSGSERMSEEEITEEPEFEGSAGLPQSPTDFEIGNIIKEAPTQVIFKDTESHRALIEK
                     PKRFVSQNTNPSKYGKRECFSGRHWENLQGVRQGKLMSQPRDTGKAVVHQRPFVGRRP
                     YRLLKYGENFGRSARLVCRMTHQKENPYKCGVCGKCFGRSRSLIRHQRIHTGEKPFKC
                     LDCGKSFNDSSNFGAHLRIHTGEKPYRCRECGKCFSQSSSLIIHQRTHTGEKPYQCEE
                     CGKSFTNSSHFSAHRRAHTGENPYKCGDCEKSFNNCTRFREHRRIHTGEKPYTCAQCG
                     KHFNKSSFLTKHREIHIREKPLPYSPSVYSPENLLKARSAELRKTF"
ORIGIN      
        1 cccccctggt cgcgagtagc gcatgcgtag ccgcgactcc cagcgccccc cgcgctctca
       61 gctggcggag ctgaagaggc tgcttgccag cggttcaccg ccccccaccc tcaccccatc
      121 cccgcgaggc cttgctcata gcttcttccc ctctggccga ggttcccggc accctcgtga
      181 ggaggaaccc tgaacgctgc aggcgctgct gggagcctgg acactcctgc actcgcgccc
      241 ctgtggggca cctgcagcgg cctggacccg ggccaggacc cctaggccgg ccgcgcctcc
      301 tggggcctcg cggacacacc ccctcccggt ggccgcctcc gcccaccttc agtcccctgg
      361 gttcccttcc agccctgcgc cttgttctct ttctgacctt gcactctaaa gaacctcatg
      421 agagagggcg catcttgatt ggataagagt ccgtgtttgc agacttttag ggtgggtaca
      481 cattcacctt ttcaagagcc ttgtacctat tcgattaatc agcctggtgt tccttgttcc
      541 agctgacgtg ctatctttta tctccccacc gtcccatatt tccaaggaca ttaagtggag
      601 ggcacttgga agcttctctg gaccctgact tggagctaga cctattggcc tctttggatc
      661 atggctacag tgataaaccc tcagatggac gtggaagttg aggagtgtct cataatgaaa
      721 gtggagaagg actccgggtg ggcatcggag cccattctgg aaagatcaga cagcactgaa
      781 tgtgaatcct ttcgtaaatg cttcaggcag ttctgttatg aggatgtgac aggaccccat
      841 gaagctttca gtaaactctg ggaactctgc tgccggtggt tgaagccaga aatgcgttcc
      901 aaggaacaga tcctcgaaca gctggtaatc gaacagtttc tcaccattct gcctgagaag
      961 attcaggcct gggcacagag gcagtgtcca gaaagcggag aggaggcggt ggccctagta
     1021 gtacatttgg agaaagagac cagaagactt cggaagcagg tcagtggccc tcagcactca
     1081 gagaagcaag ccccacctag aactgtgtgg gaagtagcta actatgagcc agagcaactg
     1141 gagacccagc acagggttgt ttctcgggag gaagctggaa acttccactc aggacaccag
     1201 gaacagctga accaaaaaag ggagcatagg ccattaccta agaatgctca ctcttctgtc
     1261 tgggctcctg tccctagtag tgagtggacc gctgtagatg aggaggcgac aacacaggag
     1321 ccagtgagag atatccacac ggtgagaagc tttccctaca aaaggagtgt acagcaagtt
     1381 cctgctcaca gagatctcta ccatgaaatc aggaaggaaa gtgcatgcag cgtggtttcc
     1441 ctgggagaca ctgtgtctgc acctaacaaa atagcccagt tggaacaaaa aaaggaacca
     1501 tggactgtag gtctacattc ctcaaataag aggactagtg tcctgcaaag caaaatcagc
     1561 aaagagaagt cagtgcacgc tgttcagatc ccagcaagga atgcagggaa agtgtggcga
     1621 gagcagcaac agtggggttt agaagatgaa aaaattgcag gtgtgcactg gagctatgaa
     1681 gaaaccaaga cttttcttgc gattctcaag gaatctcgct tttatgaaac actccaggct
     1741 tgtccccgaa atagccaggt gtatggtgct gtggctgaat ggttgcgaga atgtggcttc
     1801 ctcagaacac cagagcagtg ccggaccaag ttcaaaagtc ttcagaagag ttatcgaaaa
     1861 gtgagaaatg gtcacatgct agaaccctgt gccttctttg aggacatgga tgccttgcta
     1921 aatcctgaag cccacacttc gtctactgag aggccaaagg ccgtgatctc tctcccacta
     1981 aagagaactg ctgttagtgc taaagagcag gtcagtttgg tggaggagga ggaaggtgct
     2041 gaagactctg atggcgatga agtgggcatt gagtttgtac gcaagtctga aatccgtgct
     2101 gcccctatct tgtttcaaaa cctgagtggt gtgcattggg gctatgaaga aaccaagacc
     2161 tttcttgata tccttcaaga gacacgattt tatgaagcac ttcaagcctg tcatcggaag
     2221 agcaaattgt atggagttgt ggctgaacaa cttcgagagt gtggctttct gcgaacacca
     2281 gagcaatgcc gaaccaagtt caaaagcctc cagaagagtt accgaaaagt gaagaatggc
     2341 catgtactgg agtcctgtgc tttttacaag gagatggatg ccctggtgaa ctgccgtaca
     2401 gctgcccttc ccaccaacac ctcagaagaa atcccatcac tctcaaggca agaaagggga
     2461 catattgagg ttgaacccca agagcctaca acctgggaac ctgaggagag ctcacaggag
     2521 gcggtgttag aagattctgg cagtgagaga atgagtgagg aggaaattac agaagagcca
     2581 gaattcgaag gatctgcagg cctgccgcag agcccaactg attttgaaat cggaaatatt
     2641 attaaggaag ccccaacaca ggtaatattt aaggacacag agtcccatag agcattaata
     2701 gaaaagccta aaagatttgt ttcccagaat accaacccca gtaaatacgg taaaagggag
     2761 tgcttttcag gaagacactg ggaaaacctt caaggagtta gacagggaaa actgatgtct
     2821 caacctagag atacagggaa ggctgtggtg catcagaggc cttttgtggg aaggagacca
     2881 tacagacttc tcaaatatgg agaaaacttt ggaaggagtg cccgccttgt gtgcaggatg
     2941 acccaccaga aggagaatcc ttataagtgt ggtgtctgtg gaaagtgttt tggtaggagc
     3001 aggagcctaa tcagacacca aagaatccac actggggaaa aacctttcaa atgtcttgat
     3061 tgtggaaaaa gctttaatga ctcctcaaat tttggagccc acctgagaat ccacactgga
     3121 gagaagccgt acagatgcag ggagtgtggg aaatgcttca gtcagagctc aagtcttatc
     3181 atccatcaga gaacccacac aggtgagaag ccctatcagt gtgaagagtg tgggaaaagc
     3241 ttcaccaaca gttctcactt cagtgcccac cgcagagccc atactggaga gaatccctac
     3301 aaatgtgggg attgtgagaa gagcttcaat aactgcacaa ggtttcgaga acaccggcga
     3361 atccacactg gagagaagcc ctacacgtgt gcccagtgtg gcaaacattt caataagagc
     3421 tctttcctca ccaaacaccg ggaaatccac attcgagaaa agccgctgcc atactcccct
     3481 tctgtgtact ccccagagaa cctactgaaa gccaggagtg ccgagctcag gaagaccttt
     3541 tgacagtgag cttgtctttc cactcgcccc ttagccatct aatcctagtc ccgctcttgg
     3601 aagcaatccc ttcttagctg taaattacag tttccaagac aggcctgaga atagaaataa
     3661 actaaacttc tcatctgttc tcacctcata gtctaacatg ctcaagctgc ctctctccaa
     3721 tgagtcttgg caattttaat aaattcagaa taaatttctc actagaatgt tgaggctaat
     3781 gcataagttg tctagcaact ttcaaaactc ttacacatgg ttgaatccat atattttcaa
     3841 atatatgaat ggtggaaaat ttttatggtg tatctgtcac ccatataaga tcttggcagc
     3901 aacttgacaa tagattttca tgtctgggta gaacttttag gagtttaata agaactgtat
     3961 cagatccatc ttggttttga gggtacaaaa ggagagtgaa agttttatac cttccttcct
     4021 caagaagtct gtatcaagaa gttgatccaa atagcgaggg tctaatttcc tgtgctgtta
     4081 cagaaatcgc attgctaata cctgttctcc accaggacga gcacctgctc acccttcacc
     4141 tccctttctg ttcctgagga cttaactcca gtggctgctg cttctccagt gacaaacgat
     4201 ccttgtatat ttatcgcaag tctatactta cctcttaatc gttctgggtg ctcttgtctg
     4261 actcttctgg gctaccttaa cccatgcaga tgggagagga tgcacactgg tgctgtctca
     4321 taagagacag tcagattgca aactctagct ctacccatca tttctctgac tcttaaccta
     4381 gagcaaaacc agccagtatg ttggcatatt tcaaatagct tagctctaca tgtcaatgta
     4441 atataatagt gtttctaaaa gtttaaggct gtaaggaaga agataagacc tgaagtattt
     4501 aactgactct ttaggcttat tttagatcga agagctacct cagtccagat tacacttcca
     4561 gggttaactg ttacactact agtctctggt tctgaagttt ctagttcctg tttataggat
     4621 cataaacctg actatagagt cctgaataat tacaccactc tatatttcac tcagtggaag
     4681 tgaagttact tataaacttc cactctgcca ccttattttc cccattgtcc tattctgaaa
     4741 aaaataattg ataattccct ggcattaact aggtatatat tgtcagaaag tttctggtgg
     4801 ggaaatactc atagacttac cgatgaaatt caggaatctg atcttcccaa accagttact
     4861 taacattggg gcccgtggtg ttcatacctt taatacatag gtaaccccat gtagcttttc
     4921 tttggggagg gagaagtccc aagaatagtg gaaggagaac catagtcagg tgtttctagg
     4981 ttctcctcag atgctctcat tgaaaacatc tagagatgat atttttatgt gaatatattt
     5041 gagtcttttg agacctattc agcaaagtat caaagagggt agacattgta gaaagaaaag
     5101 tgctttatgg tgccagcgta ggatatagcc tgttggaagg caagtgactc aggtaaatgc
     5161 tcataactgt ttgtgatgtg tgtttgttgg acatgttata attgttgaca acttaacagt
     5221 agctaatatc ctgtgtattg tctgaaatag agactcctaa tggtacatgc agcttcatgt
     5281 tggtactgtg cctagaccag taagattgtg tggtgccagt ggacctgtgc ttataattgt
     5341 atagatgttc tggaattcca gctctagaaa agatgcacat tagtctaaat tgccacttag
     5401 taacatgtac acaggattaa tacttatatg gaagcatgat tcagaaagta gatgacgttc
     5461 accaatactt atgcactgtt atgtataaga ccatgtttta accacaggga ggaagacaaa
     5521 aatgatgggg gtcatgactg tactccacct agtaagtgtt atggaagaag ataatctagt
     5581 taactccatg gtggtgtgga aggtcagtca ccccatctag aggagttgca accacatcct
     5641 aaagaccgtc tataaactgc aaatagaaaa ccagtttgga caccactttt tgacacactt
     5701 tcccagcatc agaaaagatt cagggcctgt tctgtctcca ctaccacaaa gtgattatct
     5761 cctgtgtcta agaaacagtg gggatgaggt ttgggttccc cacctatagt tctaatcata
     5821 aacaatttgt tgggatgtgt attaatctag tgggccttat ctcagttctt agacagatct
     5881 tcctatcatc ttaaaccaag gtgcttgttt atatgtttct cttgtcagct gatgtgtgaa
     5941 agttagagta gtacattgag taatacatct ttaccacatc tctgtaatga tcaatagatc
     6001 tcaataccaa ggacttcaag gaagaaaagg agtttttaaa aaaaatgtta cactgtgatt
     6061 tttataactt tctgcttctc tcttgttctg gctgctggaa agctcaacaa aacagtccat
     6121 tgagccaact acttacccca atttatttta ctctgtcata ttgctttgga gattgtttca
     6181 atcctgtttt tgaacaatgg tatatataaa cagattcttt atttttgggc attctgtcaa
     6241 ggacatttag aagttgttcc tatttcctgc ataggctttc attgatttcc acaatacctc
     6301 actaattttt actgaagatt ttgtttcatg ttcaacctaa ttcattcatc tggaaagaaa
     6361 catgtttttg aaaaaagaaa aagaaaactc acatattaaa caggtcaggg catcctgcca
     6421 ctgaggaatg tgtattagac cagaacccaa aagaactact tcctggatat taacctgata
     6481 aattataact tctttgtgaa tagttaactt aattgccaaa attgcaggga tgatcatgtt
     6541 catggagcca tgaagaaata gtaaggccag actcataccc tagctgtcca ctgaatgcca
     6601 tctctggcac attgagtcca tctcatacct tagaaagatg acagcagcgt cagcccaatt
     6661 tcctcagaaa gaagaaagga caagccactt gtgttcagtt gcaggaaagc ccttccttct
     6721 ctccatcact ctgagagtca aagctgggta ggtagagtgt tttgtgcgtt ctggtgctca
     6781 gtgatggaca agattcatgg attaggaaac taggaaaacc ccagtggaaa gagcagttga
     6841 gtggtttgtg tgatccaaag cctccacctc cacctgaatg cactccaagt gtaaatggac
     6901 ctctgtcttt gttttgtatt aatgttcacc tagatgtctt cttgaaagct tgtatgtgat
     6961 atgcctacaa taaatgggct acctttggtt tgctataa
//
