LOCUS       XM_039100336            5068 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zinc finger protein interacting with K
            protein 1 (Zik1), transcript variant X2, mRNA.
ACCESSION   XM_039100336
VERSION     XM_039100336.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100336.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5068
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5068
                     /gene="Zik1"
                     /note="zinc finger protein interacting with K protein 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 14 ESTs, 5 long SRA reads, 27 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:102554457"
                     /db_xref="RGD:1590949"
     CDS             1141..2523
                     /gene="Zik1"
                     /codon_start=1
                     /product="zinc finger protein interacting with
                     ribonucleoprotein K"
                     /protein_id="XP_038956264.1"
                     /db_xref="GeneID:102554457"
                     /db_xref="RGD:1590949"
                     /translation="MALMQGCVTFQDVAISFSHEEWRLLDETQKLLYLSVMLQNFALI
                     NSQGCGHRTEDEERRVSTRASKVLRSETVPFTQKSHLCEKCVPILQDILCLPGLPGQK
                     HSIEASSEVDQHQNHNTTGKPLKKNADKASYLFYLSAKSFPSWDVEKDLPDILSLLKS
                     QVCPKTKKPRKSTDDRKETSHESHMSEECQRLSSQKQTFAHHPKASNGKKLYECSKCG
                     KTFRGKYSLDQHQRVHTGERPWECRDCGKFFSQTSHLNDHRRIHTGERPYECNECGKL
                     FRQNSSLVDHQKTHTGARPYECSQCGKSFSQKATLVKHQRVHTGERPYKCSECGNSFS
                     QSAILNQHRRIHTGVKPYECRECGKSFSQKATLIKHQRVHTGERPYKCSECGKSFSQS
                     SILIQHRRIHTGARPYECNQCGKSFSQKSGLIQHQVVHTGERPYECDTCGNSFSQCSS
                     LIHHQKCHNA"
ORIGIN      
        1 taaagaaact ttcaattgtg tttgatctgc acaggggcag tttgaagaat tgatctgaat
       61 tctgctctcc tttgatgtta ggacacaaaa ggaatccaag gagctggagc agagggatca
      121 attttaagga agagtaagag atgatgaaaa tgtgtgttgc taagatgcca gtatgagatc
      181 cctccatttt tgttttatgt agttatttag tgctatgaac ttctcttcta caatcaccta
      241 cattttgtcc tgaaatatat atgtgcactt tgagaatgct gtgcctatca ccctggtcct
      301 ctaacacgcc tagtatcaca gcgtctggtg tgagaaattg gtcaggattt caaaacagat
      361 ctgtacttcc agattacagc tattggtgct ttgcagcagg caagagaggc ctatctgctt
      421 ggccttttaa gataccaacc aacttgtgtg ctgtccatgc caaacgggac tttgtcacct
      481 ttaaggatgt cgccatctta ttctccaggg aggagtggag gctcctcaat aagtctcaga
      541 agcaactgtg tgatgctgga gaacgttact ttgcacttgt aacttcattg ggatttgctt
      601 caagatggtt ctgtgcagat ttctggcaag gagcctgggg atagctctgg atgctttaca
      661 gtgaggtgca atcacagagg accttgatga gttgtccagt caaaaaggga gacttgtttc
      721 ctgttgctct gtactacctg ctgtgtggca ttttccacta ctcatatatt tacacttgag
      781 attgctggca agaaatggat tatggaaagc taccttttga tcaggtgatg atgttgcaga
      841 gcttccccac ccggactcat ttgtaggaac tacgttaccc agaatgcgct atttacggcg
      901 agaagaactt gagccaatga gcatttagga tagtacgatc ttcagatcat gtgcaagatc
      961 cctttgtcca gaggtagggg atgaagagtc tcaaggagcg gttctaaggg agtgcacgga
     1021 cagtggcagt attgtccagg tccccggtcc ccatctcccc gtcatctgcg ctcgcctact
     1081 tggatgactg tgcctaggct catgcaccag gcttaggtat ccacaactgc agaagtggat
     1141 atggccctca tgcagggctg tgtgacattt caagatgtgg ccattagctt ctcgcatgaa
     1201 gaatggagac ttcttgatga gactcagaag ctcttgtacc tcagtgttat gctgcagaac
     1261 tttgcactta taaactccca gggttgtggg catagaacag aagatgaaga gcggagggtt
     1321 tctacacgag cgtcaaaggt tttgagatct gagacagttc cattcacaca aaaatctcac
     1381 ctctgtgaaa agtgtgtccc aattctgcaa gacattttgt gcctgcctgg tttacctggg
     1441 cagaaacata gtatagaagc aagttcagaa gttgatcagc accaaaacca taatactaca
     1501 ggaaaaccct tgaagaagaa tgctgacaag gcttcatacc tattctactt gtcagcaaag
     1561 tccttcccta gttgggatgt tgaaaaggac ctcccagaca tactgagcct tctgaagtct
     1621 caggtctgtc ccaaaactaa gaagcctagg aaaagcactg atgataggaa agaaacaagt
     1681 catgaaagtc acatgtcaga agaatgtcaa aggctttcca gtcaaaagca aacatttgct
     1741 caccacccaa aagcctccaa tgggaagaag ctttatgagt gcagcaaatg cggaaagacc
     1801 tttcgtggca aatactccct tgatcagcat cagagagtcc acactggaga aaggccttgg
     1861 gagtgtagag attgtgggaa attctttagc cagacctccc acctgaatga tcatcgtaga
     1921 atacacactg gagaaaggcc ttatgagtgc aatgaatgtg ggaagttatt tagacagaac
     1981 tccagtcttg ttgatcacca gaaaactcat actggagcaa gaccatacga gtgtagccag
     2041 tgtgggaaat cctttagtca aaaagctaca cttgttaaac atcagagagt tcacacagga
     2101 gaaaggcctt acaagtgtag tgagtgtggg aattccttta gtcaaagtgc cattcttaac
     2161 caacaccgga gaattcacac tggagtaaag ccgtatgaat gtagagaatg tgggaagtcc
     2221 tttagccaaa aagctaccct tattaaacac cagcgagttc atactggaga aaggccttac
     2281 aagtgtagtg agtgtgggaa atctttcagt caaagctcca tccttattca acatcgcaga
     2341 attcatacag gagcaagacc ctatgagtgt aaccagtgtg gaaagtcctt tagccaaaag
     2401 tctggcctga ttcagcatca ggtagttcac actggagaaa ggccttacga gtgtgacaca
     2461 tgtggtaatt cttttagcca atgctctagt ctcattcatc accaaaaatg ccataacgct
     2521 taagaaacct catgaaagaa gcaaatgggg ataagccttc aacaggaggc ctaacatcat
     2581 ttagctcctc caaattcgta cttgagaaaa gccttagatt tatagggaat gccctcttct
     2641 ttgatctttg tgttttgttt tgaagtacca tgatactata gaaccttccc aaaggataca
     2701 actactatct gagcttggcc ttccagcatc tagggggagt gacattcctc aggagttcag
     2761 gcatgcataa gctgaggagc tggtttgccc atactgaact ggccaacatg cttcccattt
     2821 ctgtcagtac tagtgtttat ggtagaagcc atcattctct accacgtgac cagagtacaa
     2881 tgatcacgcc atcatggtaa ggaaaagcca actgtgcaga ttgcctggaa gaactcttaa
     2941 atggagtatt tatggagaat tcgtccccca gttttaactg attaaagtgt ggatatgact
     3001 aagctttcac caagaagatc aaatttattg tctgctgaag gtgtctataa tttacttacc
     3061 tgctttaaaa aaagtagttt ttaatcagtg tcatgtgaca ggtaggtgaa tgtttccagc
     3121 ctttcaatta ccagttggtc actgccttct ccccattgct ctggtttgta cactgataaa
     3181 tgccttattc tttaagctac ctttactctt aagagtgcag tttactaagt gggaaggctg
     3241 ggaaacagac tgatccttct agggaaggat ggacagcttt tatagatggt ttcaacttgg
     3301 tttacctctg cagggacagc aaaatgatga aagcaaattt ctattgcttc ccaggccaac
     3361 atcagaagct acaggaactt cattattaca gtttatgaac aactgaatat gtattcatat
     3421 acatgaatat gtagttggaa actttctgtg gtcatctcaa gaggtctgct attgtgataa
     3481 gctcctgtac ttgtgggaat ggaatgaatt ggctctattt ttctcagaag atgtccttaa
     3541 aatgcccatg atggagagag gtaactcata aggatgtaca aaaaatttgc cccaatagca
     3601 tttattccgt aggcaccagc ctataagatg accacttatg aggtgatcag agttaggtat
     3661 aaaccatctt tggcatacaa aatatgggta tagtgtagtc ttcagccatc cagatggcat
     3721 atggctcttg taaaagtgca cccagcaatc tttgtctttt gctgtattca caggactgaa
     3781 agatctgtga atgtataatg gtggaggtca ttgtcaaaaa caatatgcct ttgtgggata
     3841 ttggagtctg acctgactgt ttacctccag ccttgttata gagataggaa aataaggagc
     3901 tggagagcct gtagtcttag aaagtagctg ttgtaattgc agtccaggtg ctgcatttgc
     3961 agtctggtat tgacaaaact tcactgccag tatttcctgt attaacaaag gatgccatga
     4021 ggatagagtt caatcaaaat gggggttact aagacttctg gtttctggaa agtaggaatt
     4081 ctgagctttg tattttaagt aacattttat aaagttcatt gatatgttag tgtaatgcag
     4141 tcatctctga tttacccttc agaaattttt aaaattcatc tttgtgactt acctcatacc
     4201 ctgttaaaat ctttcttgtg ttcccaggct tataagtgtt cagtaactta cattttgttt
     4261 acaagagtgc agtttatgaa ggaaaacaaa agttcttttt tttttgttag atataatgtg
     4321 ttttaggaag tcataaatat tttgacattt atcactactg ctttttaaat aactttatac
     4381 tgttatacca tgtttggttt tttaactata cagcaatctg ttgacctatt cattcgagtc
     4441 ttggttgaat cctttcttga gctgttatgt ttaagactaa aatggatata agcatattac
     4501 tcagtgtgct cgtagcattt tttaattctt cttgagccag gaatttagta tatgtgaatg
     4561 ctttcatttt taagaaagtg tcaaactgat gtagattggt gtagactcgt ggttctcaac
     4621 cttcctgatg ctgcagttct ttaatatatt ttctcatgtt gtggtaaccc tcaactgtat
     4681 aattactttt gttgctactt cacgagtata attttgctgc tgatatgact tgtaaatatt
     4741 tgtgttttcc tatggtcata ggtaacatct gtgaaagggt catttaactc ccaaaggggt
     4801 cacgacccac acattgagaa ccactgatgt gcaaagtaaa tgaacattct tgctagtgct
     4861 tagtgtggtt aatgtgtttg ttttgagcca ttttaatagc tgtgtaataa cacattgtat
     4921 agccttgttg gcttttttgg tgttttatga tactgaatat ttttgtgttt atttgccagc
     4981 tgtatgtctt taaaacttgt tattctgcct attttcagat gacaaatcct gttactgtcc
     5041 ttttcattaa taaatagatg tacactaa
//
