LOCUS       NM_001394128            3951 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus Zic family member 4 (Zic4), mRNA.
ACCESSION   NM_001394128
VERSION     NM_001394128.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3951)
  AUTHORS   Sakai-Kato,K., Ishiguro,A., Mikoshiba,K., Aruga,J. and
            Utsunomiya-Tate,N.
  TITLE     CD spectra show the relational style between Zic-, Gli-, Glis-zinc
            finger protein and DNA
  JOURNAL   Biochim Biophys Acta 1784 (7-8), 1011-1019 (2008)
   PUBMED   18298960
REFERENCE   2  (bases 1 to 3951)
  AUTHORS   Ishiguro,A., Inoue,T., Mikoshiba,K. and Aruga,J.
  TITLE     Molecular properties of Zic4 and Zic5 proteins: functional
            diversity within Zic family
  JOURNAL   Biochem Biophys Res Commun 324 (1), 302-307 (2004)
   PUBMED   15465018
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760393,
                              SAMEA5760433 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on conservation
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-180               JAXUCZ010000008.1  100796102-100796281
            181-265             JAXUCZ010000008.1  100799746-100799830
            266-883             JAXUCZ010000008.1  100805919-100806536
            884-1199            JAXUCZ010000008.1  100811050-100811365
            1200-3951           JAXUCZ010000008.1  100813520-100816271
FEATURES             Location/Qualifiers
     source          1..3951
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q31"
     gene            1..3951
                     /gene="Zic4"
                     /note="Zic family member 4"
                     /db_xref="GeneID:315882"
                     /db_xref="RGD:1307298"
     exon            1..180
                     /gene="Zic4"
                     /inference="alignment:Splign:2.1.0"
     exon            181..265
                     /gene="Zic4"
                     /inference="alignment:Splign:2.1.0"
     CDS             196..1200
                     /gene="Zic4"
                     /note="zinc finger protein of the cerebellum 4"
                     /codon_start=1
                     /product="zinc finger protein ZIC 4"
                     /protein_id="NP_001381057.1"
                     /db_xref="GeneID:315882"
                     /db_xref="RGD:1307298"
                     /translation="MKYKTSLVMRKRLRLYRNTLKESSSSCGHHGPQLAAASNPSVFP
                     GLHEQPPQASHSRPLNGLLRLGIPGDMYARSEPFAPGPMARGDTLATATALHGYGGMN
                     LTMNLTAPHGPGAFFRYMRQPIKQELICKWLGDDSPISPRPCSKTFSTMHELVTHVTV
                     EHVGGPEQANHICFWEECPRQGKPFKAKYKLVNHIRVHTGEKPFPCPFPGCGKVFARS
                     ENLKIHKRTHTGEKPFRCEFEGCERRFANSSDRKKHSHVHTSDKPYMCKVRGCDKCYT
                     HPSSLRKHMKVHGRSPPPSSGYDSAITSALTSTSLESGREPSVACSAAVVVRGTDVSE
                     "
     exon            266..883
                     /gene="Zic4"
                     /inference="alignment:Splign:2.1.0"
     exon            884..1199
                     /gene="Zic4"
                     /inference="alignment:Splign:2.1.0"
     exon            1200..3951
                     /gene="Zic4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggctcatttc tgcttcatca tacattccct aactgcttcc ccgaaagctg gagaaggaga
       61 aatgaaggat gaccgcctcg gtggaaccac aaaagaggtg tagaggggtt tctggtcccc
      121 cctcttctac cccaaagtga tgtgcagaaa tgaggtgacc caggcaacag gtggagcagg
      181 gctcaagctc agaaaatgaa atacaagact tccctggtga tgaggaagcg attacggctg
      241 tacagaaaca ctctgaaaga atcaagtagc agctgtggac accatgggcc ccagctcgcc
      301 gctgcttcga acccctcggt gtttccgggc cttcatgagc agcctcctca ggcctcccac
      361 agccgtcctt tgaacggact cctgcgtctg gggatccctg gagacatgta tgcgaggtcg
      421 gaaccttttg caccagggcc tatggcccgc ggcgacactc tggcaacagc cacagctctg
      481 cacggttatg gcggcatgaa cctgaccatg aacctcaccg caccccacgg ccctggagcc
      541 tttttccgct atatgcgcca gcccatcaaa caggagctca tctgcaagtg gctgggggat
      601 gacagcccga tatccccgcg gccctgctcc aaaactttca gcaccatgca cgagctggtc
      661 acgcatgtca ccgtggagca cgtcggtggc ccagagcagg ctaaccacat ttgcttctgg
      721 gaggagtgtc cgcgacaggg caagcccttc aaagccaaat acaaacttgt aaatcacatc
      781 cgcgtgcaca cgggcgagaa gcccttccct tgtcctttcc cggggtgtgg gaaggtcttt
      841 gctagatcag aaaatctcaa aatacacaaa cgaacacata caggcgagaa acctttcaga
      901 tgtgagttcg agggctgtga gcggcgtttc gccaacagca gcgaccgcaa gaaacattcg
      961 cacgtgcaca cgagcgacaa gccttatatg tgcaaggtgc gcgggtgtga caagtgctac
     1021 acgcacccca gctctctgcg aaagcacatg aaagttcatg gtcgctcgcc gccacccagc
     1081 tctggctacg actcagctat cacgtctgct ctcacgtcga cctcgttaga aagcggccgt
     1141 gagccctcag tggcttgctc tgcggcggtg gttgtgcgtg gcacagatgt gagcgaatga
     1201 tgttgcttgc aaggtaatct tgccctgcgc agctgagcgc ccgcatcttg cgcctgcgac
     1261 atcaaagggc tctctcacaa agcagtgttt cttcgccacg gtgcatcttc atggtaagtt
     1321 aggatttcta tggcaatggg caagtctcac tgaaatcctg aaaggccgag cctggagccc
     1381 gtccaggctt ttcattaagg acataatatt tacgtctaac aggccttttt tcttgtgtat
     1441 acaagtatat atttttgttt gacgcggact aaatcatttt catttaattt ccggtaaaca
     1501 aaacccacgc gaatgggcac ttgttcccga tcataataaa aatggataat aatgcgaggg
     1561 aagaaaaggg ccgcttgaat cgccgctcag ctctctttgt ttctgctttc tgcggtgatc
     1621 agagggcgta tttgggtttg atggcgagtt tctaaaggcg aggaaatggt ttgtaagagg
     1681 gaaaagaaaa ggagaaaggt ccaatcaagc tcgggttgtt caaagagtcg cgttttgggg
     1741 ttgaaagtgt gagtttgacg gtgcatcagc atgccgcgtt aggctcgcca tggaaatgcg
     1801 cgcggggagc gaccgcttca aaggcggcac acttcactgc ggacactcta ttaagataca
     1861 tttgcgctga cctttgcttt cacgccattt aatactgtca ctgtgctctc cagtatatac
     1921 ttcctcccag gacctgtctt gccagtgttt aggggttcaa catgcaccct gatgtagcgg
     1981 gttttggcac ccgggattct ttcaagagag ggaggaggag ccgaactccg aacaccttga
     2041 cagcgcccat aggctccaga gttagagtaa atgactaggg catcccgaga aacttaccaa
     2101 aggaggattc ccagctcagt tgtggggtgg ccgacttggg ggaagtatgg gagccgttaa
     2161 ctacggctca gggacagtta gtgtccctgt gttccccaga ggtgccatac ttcttcctaa
     2221 ccctagaact ctctcagccc cttaagcttt tcctctgatg tgccactgtg gtctgggctg
     2281 gctttgggta caaactgaaa agcccaaggc caaggggatg ggggaagatg gcagcaaagt
     2341 tagaagtcca tgttctctta attgtcttgt tgtttatttt atccaagtac cctagtgaat
     2401 aggggaaaaa taaacacggt ggaaaaaaat caaacagtag agtcttcttt agtgcccgtc
     2461 cttgtggttg aataaaaagg atggtctgcc ttctattgag ctgagaaatc tttgaagtgg
     2521 gagttattat ctgagacatt cctgcttgtc gtcctaacaa cgctggtgaa atgtaaaagg
     2581 ttctttgtca gcgatttgtt ctcctctctg tcaaactcac tttgccccat tggttccaaa
     2641 ccattgctaa agagataaaa tcaaatttct taaaaaaaga agaaaagaag agaaaagaaa
     2701 agaaaagaaa gaaagaaaga aagaaagacc cctacactcc accagtagat aactttagga
     2761 ataagttttg ctaaggggga tgccccccat ccccatcctc ccaaaataca aaaaatacaa
     2821 aaaaaaaaaa gcctactgtg tagtttcagt cctggtgatg tgtgtagatg ttggaaaacc
     2881 ctttgcatca aaactggtac ctcaggtaat gcaagaaggg tagaggcaga gcctaagtgc
     2941 cccaagtcga tgctctggat gctcctgtga gtgctgtcag tcctggcctg tattccatcc
     3001 accctggttt acaaactgga cgaattttac tggagatcac tccagttcca aatattcctg
     3061 cttgggatac ttggaactta agcctgaaaa caggtaatgt taaagttttc cccttttcac
     3121 agaaacttcc ggtataaata gattcactgt gtttcctcac cactagtgca gtcagcactc
     3181 gtttctgcct tctgccatta acctaaagga tggtagcaca atttcccccc ctagatcatc
     3241 ttggagttca gaaggtttgg ttcacaagat agtaacaaaa aagattgcat gcatatgcca
     3301 cctcctcccc tatgtgcagt tcttcatttt atagtgtgcc tagaaaggaa actttgcccc
     3361 tgttcaggtt ttttccgacc tcctattgta gttttaaagg tgattaaaat agataaggat
     3421 gcgcccttcg ccctgctccc tgtgcttact aaatgatttg tgaagaactt tccccaaatt
     3481 gtaacccctg tactcagtta gagttgctgc aaaatgtctc ttatatcgat gttgtttgtt
     3541 tacctgactc tccatatgtc tgtttgtatt gctaatttat ggggacatgt aatgattgca
     3601 atgaaagtga attatccagt caggcgaatc tcttatagtc ataactgaca cacacccaag
     3661 tctgagtcag cccttagatt attggtacct tgtctatcta cactgtgatt ttcaaaatct
     3721 ttcccctgaa cagcagttaa actaatgaac taatttgaag ggaaaaaagt tgttgtgtat
     3781 atttgacagt ggttgttgaa taaagttcaa agctgaggca taatctcctt ggaaacatgt
     3841 acctgtaagt taaataaaat aagttttctc cctctgaaag actttgtgaa tgtgtagctt
     3901 ctttttgctg tgttgtttgg aaataaagga tttgatgttt tcttttctcc t
//
