LOCUS       XM_006241654            4688 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zinc fingers and homeoboxes 2 (Zhx2),
            transcript variant X1, mRNA.
ACCESSION   XM_006241654
VERSION     XM_006241654.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006241654.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006241654.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4688
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4688
                     /gene="Zhx2"
                     /note="zinc fingers and homeoboxes 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     mRNAs, 11 ESTs, 5 long SRA reads, 6 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 172 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:314988"
                     /db_xref="RGD:727926"
     CDS             915..3425
                     /gene="Zhx2"
                     /codon_start=1
                     /product="zinc fingers and homeoboxes protein 2 isoform
                     X1"
                     /protein_id="XP_006241716.1"
                     /db_xref="GeneID:314988"
                     /db_xref="RGD:727926"
                     /translation="MASKRKSTTPCMVRTSQVVEQDVLEEADRAKDKGLGVPPSDVSK
                     ERWAAEPEPSSKESEVVEVRSVGESQSKKLQGGYECKYCPYSTQNLNEFTEHVDMQHP
                     NVILNPLYVCAECNFTTKKYDSLSDHNSKFHPGETNFKLKLIKRNNQTVLEQSIEATN
                     HVVSITASAPGSSDNDPGVSVGKTATVKTGKQKADAKKVPKKPDEAAPDNHMEGTARL
                     VTDTAEILSRLGSVELLHDSLGHVMPSVQLPPNINLVPKVPVPLNTTKYNSALDTNAT
                     MINSFNKFPYPTQAELSWLTAASKHPEEHIRIWFATQRLKHGISWSPEEVEEARKKMF
                     NGTIQSVPPTITVLPAQLTPTKVSQPILQTALPCQILGQPSLVLTQVTSGSTAVSCSP
                     ITLAVAGVTNHGQKRPLVTPQAAPEPKRPHIAQVPEPPPKVANTPLTPASDRKKTKLQ
                     IAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGIVHITSESLAK
                     DQMAITGTRHGRTYHVYPDFAAQKFKEKSQGQLKTLEDSFLKSSFPTQAEVERLRVET
                     KLSRREIDSWFSERRKLRDSMEQAVLDSMGSGKKGSDVVAPNGALSRLDQLSGAQLAG
                     PLPSPSSAVVQNQEQVHLLRSTFARTQWPTPQEYDQLAAKTGLVRTEIVRWFKENRCL
                     LKTGTLSWLEQYQRHHLSDDHGHDVASRRATKHVAESPKNGSEVAHQYAKDPKALGEE
                     ESEKLVPRVKLVGDPSKDCLAGKPSEATSDRSEGSRDGQGSEENEESGIVDFVEVTVG
                     EEDAISEKWGSWSQRVAEGTVERADSDSDSTPAEAGQA"
ORIGIN      
        1 aagattcagg gatctcgatt gcgcctcccc cacctcttcc cgcaaaaaat tccaatgagt
       61 ccgttactgg actcagactt ttaagttcat ttactacacc ccccacttgg ccactcatct
      121 gagcctttag gggcagcctc cccccaccag cagctccctc ctaaaaatga cattttgccg
      181 gcgtctgcgg aggggcctga atttcacttt gtaactttct gcggaacccg agcccgggtg
      241 gcagctccgg tggtggtatc gtatgcaaat acgcatgctg acgttacaga tcatgtgggt
      301 tttggcgtag attccccact gatcgaggca ttttccccct ttttttttct tttttctttt
      361 cttttttttt tctttttctt ttcttttttt ttttttttta tttttcaatc aaccgctctc
      421 cttacggggg cttttttctg tctgtctttc tgtctatctg tctgtctgcc agactggctt
      481 ttccccccca ccaccacctc tttcccacgg agcccgagtc gggcgccggg tggggagtgg
      541 ggagtgggtg gggggagcca gcagagttcc attttggaac gcccgtgcct cgtctccgcg
      601 ttcccagccc gggtccccgc gttcgcagcc ccggcgcagg tctccatgta ctggctgctc
      661 tgggaatccg gctgcaagag tccaaggatg taaggaactc ccagcagaca ctgatatgaa
      721 gcctcctggt ttgctcggag attgctacgg ttacaatttt ctgtgctgaa atccttctga
      781 aacactcagg cggaaggctt cagcatccaa gggaagccaa aggcatttga gaggaagtaa
      841 agcccagagc caagaatctc gctgtccttc gtctacccac tccaaaaaga aggcattgct
      901 cccaggcagg cagcatggca agcaaacgga aatcgacaac gccgtgcatg gtccggacat
      961 cacaggtggt agaacaagac gtgctggagg aggcagacag ggccaaagac aaaggactgg
     1021 gcgtgccacc gtccgatgtg agcaaggaga ggtgggcagc agagccggaa ccctcgtcca
     1081 aagaaagcga ggtggtggag gtgagatcgg tgggggagag ccagtccaag aaactccagg
     1141 gtgggtatga gtgcaagtac tgcccttact ccacgcaaaa cctgaatgag ttcacggagc
     1201 acgtggatat gcagcacccc aacgtgattc tcaaccccct ctacgtatgt gccgaatgta
     1261 acttcacaac caaaaagtat gactccctgt ctgaccacaa ctccaagttc catcccgggg
     1321 agaccaactt caagctgaag ttaatcaagc gtaataatca gacggtccta gagcagtcca
     1381 tcgaggccac caaccacgtt gtgtccatca ctgccagtgc tcctggaagt agtgataatg
     1441 accccggggt ctcagtaggt aagactgcca cggtgaagac aggaaagcag aaggcagatg
     1501 ccaagaaagt gcccaagaag cctgatgagg ctgccccaga caaccatatg gaagggactg
     1561 cccgcctggt gacagacaca gccgagatcc tgtccagact tggaagtgtg gagctccttc
     1621 acgattcact gggacacgtc atgccttccg tacagctgcc accaaatatc aaccttgtcc
     1681 ccaaggtccc cgtcccgctg aatactacca aatacaactc tgccctggac acaaatgcta
     1741 ccatgatcaa ctccttcaac aagttccctt accccaccca ggctgagctc tcctggctga
     1801 ccgcagcctc caaacaccca gaggagcata tccgaatctg gtttgccacc cagcgtttaa
     1861 agcatggtat cagctggtcc ccagaggagg tggaggaggc ccgaaagaag atgtttaacg
     1921 gcacgattca gtcagtaccc ccaactatca ctgtgcttcc tgcacagctg acccccacaa
     1981 aagtgtcaca gcccatcctc cagacagccc taccgtgcca gatccttggc cagcccagcc
     2041 tggtgctgac tcaagtgaca agtgggtcaa cagctgtctc gtgttctccc atcacacttg
     2101 ccgtggctgg agtgaccaac catggccaga agagacctct ggtgactcct caagctgccc
     2161 ctgagccgaa gcgtccacac atcgcccagg tgccagaacc tccacccaag gtggccaata
     2221 ccccactcac gccagctagt gatcgcaaga agaccaagtt acagatcgcc cacctcaagg
     2281 caagcttctt acagagccag ttccctgacg atgccgaggt gtaccggctc attgaggtga
     2341 caggccttgc caggagtgag atcaagaagt ggttcagcga ccatcgctac cggtgtcaga
     2401 gaggcattgt ccacatcacc agcgaatccc ttgccaaaga ccagatggcc attactggca
     2461 cccgacacgg tcgcacctac cacgtatacc cagactttgc cgcccagaag ttcaaagaga
     2521 aaagccaggg acagttgaaa accctggaag acagctttct gaaaagctct tttcccaccc
     2581 aggcagaagt agaacggctg agggtggaaa ccaagctaag caggagggaa atcgactcct
     2641 ggttttccga gaggcgaaag cttcgagaca gcatggagca ggctgtcttg gattccatgg
     2701 ggtctggcaa aaagggctcg gatgtggtag cccccaatgg tgctctatcc cgacttgatc
     2761 agctctctgg tgcccagtta gctggtcctt tgcccagtcc ttcatcagca gttgtacaaa
     2821 atcaagagca ggttcaccta ctcaggagca cctttgcaag aacccagtgg cccactcctc
     2881 aggagtacga ccagttagct gccaagactg gcctggtccg aactgagatt gtgcgctggt
     2941 tcaaggagaa cagatgctta ctaaaaactg gaacgttgag ctggttggag cagtatcaga
     3001 ggcatcacct gtcagatgac catggccacg atgtcgcatc aagaagagcg acaaaacacg
     3061 ttgctgagag cccaaagaat ggaagcgagg tggctcacca gtatgccaag gaccccaaag
     3121 ccctcggcga ggaggaatcc gagaagctgg tccccagggt gaaattggtc ggcgatccat
     3181 ccaaggactg tctggcgggc aagccctcag aggccacctc agacagatcc gagggtagcc
     3241 gagatggcca gggcagcgag gaaaacgagg agtcaggcat cgtggacttt gtggaggtga
     3301 cggttggaga ggaggacgcc atctcagaga agtggggtag ctggagtcag agagtagcag
     3361 aaggcacagt agaaagagcg gactccgact cggacagcac ccctgcagag gccggccaag
     3421 cctgacaggg cactggtctg aacctcagca ctgacaaagg agatgctctg tctttgaaga
     3481 aagaagaaag ccctgcccgg gatggctgtg ggccacctca gcagcactct gagtggaagt
     3541 gcttcagcag tgcctggagg ccacaggaac tccggagctc tcaatatccc cccgagaggc
     3601 tgggtgggaa ttgttcatag tgccaaagtc ctactactgc gttttcaatg ggtccctgta
     3661 catagccttt gccttcgccc cagccccgcc tcttgctata ctggaactga tttatacaat
     3721 gtgggaattt tgttaccttt ttaatcgagg gccacttcct tttccagcgc ttctgtggta
     3781 aggcgtttgc attttttttt taaattccca ggaaggaggg ctaaccacat tgcttttctt
     3841 ttctctttct tcctttcact ttattaacaa gggggaggga gcgttagcat aagtaccact
     3901 gtatctactg gattttaggt aggaagaatt tcttctttaa ggtagtttga catttgggag
     3961 atgtcttggt cggaagggcc gaggtcagtc ctctggctca aagtgaaatg ggctcacaaa
     4021 taacctacat caaaccgttc ccagttcccc agctgccttt tggggacctt acctcagccc
     4081 tacaccaaga ggtggggctg gcttctcaac tgctttggat aattggggaa caggtggctg
     4141 ccctctttac aaatcttttt aaaataccag caaaaagggc tcccaccaca gatgatgcca
     4201 tcattactct tgggaaattc agagtggtct tcctggctag acggtaccaa gataaacatc
     4261 tctgcttttc tcttctcttc tcaccgcctt ttcttggtgt ggcgtttgac aagatttcag
     4321 ttcaaagcct cactatggat tgattttgtt gctgttgttg ttgtcgttcg tgtggtgtgt
     4381 gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgc tgggccaatt ttagatacct
     4441 gagtgcactt ttttttagtt agtcctaact tttaaagaaa gaaagccaag agatatatct
     4501 ggtgtaaatg tcaagacatg gattctgttt gctgtcctgt cccctcccct actccccaga
     4561 cccttgaccc cacttgagta cactgcacaa attaaacgct agggagtttg aataaaggca
     4621 gtttttctaa ctcgtcactc atttgttgta actcaataaa gcaaagacta aacgttttta
     4681 taaccttc
//
