LOCUS       NM_001191958            5372 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus zinc finger FYVE-type containing 16 (Zfyve16),
            mRNA.
ACCESSION   NM_001191958 XM_574833
VERSION     NM_001191958.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5372)
  AUTHORS   Seet,L.F. and Hong,W.
  TITLE     Endofin, an endosomal FYVE domain protein
  JOURNAL   J Biol Chem 276 (45), 42445-42454 (2001)
   PUBMED   11546807
REFERENCE   2  (bases 1 to 5372)
  AUTHORS   Xu,Y., Hortsman,H., Seet,L., Wong,S.H. and Hong,W.
  TITLE     SNX3 regulates endosomal function through its PX-domain-mediated
            interaction with PtdIns(3)P
  JOURNAL   Nat Cell Biol 3 (7), 658-666 (2001)
   PUBMED   11433298
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On Jul 17, 2010 this sequence version replaced XM_574833.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643299.8121.1,
                                           SRR26643296.5049.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760389,
                                           SAMN12840105 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-97                JAXUCZ010000002.1  25491958-25492054   c
            98-206              JAXUCZ010000002.1  25483187-25483295   c
            207-2479            JAXUCZ010000002.1  25479963-25482235   c
            2480-2576           JAXUCZ010000002.1  25478603-25478699   c
            2577-2738           JAXUCZ010000002.1  25475648-25475809   c
            2739-2881           JAXUCZ010000002.1  25473204-25473346   c
            2882-3260           JAXUCZ010000002.1  25470935-25471313   c
            3261-3383           JAXUCZ010000002.1  25469499-25469621   c
            3384-3539           JAXUCZ010000002.1  25468498-25468653   c
            3540-3764           JAXUCZ010000002.1  25467512-25467736   c
            3765-3847           JAXUCZ010000002.1  25465090-25465172   c
            3848-3952           JAXUCZ010000002.1  25463722-25463826   c
            3953-4100           JAXUCZ010000002.1  25463143-25463290   c
            4101-4181           JAXUCZ010000002.1  25460207-25460287   c
            4182-4344           JAXUCZ010000002.1  25456567-25456729   c
            4345-4450           JAXUCZ010000002.1  25455493-25455598   c
            4451-4618           JAXUCZ010000002.1  25454473-25454640   c
            4619-5372           JAXUCZ010000002.1  25448829-25449582   c
FEATURES             Location/Qualifiers
     source          1..5372
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q12"
     gene            1..5372
                     /gene="Zfyve16"
                     /gene_synonym="RGD1564784"
                     /note="zinc finger FYVE-type containing 16"
                     /db_xref="GeneID:499508"
                     /db_xref="RGD:1564784"
     exon            1..97
                     /gene="Zfyve16"
                     /gene_synonym="RGD1564784"
                     /inference="alignment:Splign:2.1.0"
     exon            98..206
                     /gene="Zfyve16"
                     /gene_synonym="RGD1564784"
                     /inference="alignment:Splign:2.1.0"
     CDS             137..4780
                     /gene="Zfyve16"
                     /gene_synonym="RGD1564784"
                     /note="zinc finger, FYVE domain containing 16"
                     /codon_start=1
                     /product="zinc finger FYVE domain-containing protein 16"
                     /protein_id="NP_001178887.1"
                     /db_xref="GeneID:499508"
                     /db_xref="RGD:1564784"
                     /translation="MDSYFKAAVSDLDKLLDDFEQNPEKQDYFQDVQDVYAFNQCSVS
                     SELASPQLALLSKDQRCISSHASSETCCEANETFLQGKIPEGLTSKQNEKNVAGLDLL
                     SSVDASTSDEIQPSCMRRCSKPVCDLISDMGNLVHATSSEEDIKQLLPDDSKSPADTL
                     ITLDSSSVSEVLIGLDLSSVSDTLAVSSVDGGSQAVRKEQDTNAGVQSRDNSRIQESG
                     AEVDMALSDSCKYSRTENLKDKMISNELETVDFGMPSVLTEQSSEMSNTKDSPQYQRL
                     PCELLKDDGDLAEEKVGMAGNSTKCLEEGGNIIAMPCKLPKNEEISPNDPTSKDENFK
                     LPDFSVQESRTAVFIKQTVAEDSVKSDLKDNNDVVQVSSSSLHVSSDGVSPSLSCLSL
                     SGSLCGSLVDCNAHGDFLPSDESKGQNNDAVTAHEEIQKSAALDGETDLLKKEKQESM
                     FLQPVNDKEGDGEVELEEMVISGEPLEYPEGTNPAAAGSQMAPPTVSASEAPGQCEAL
                     TFSSGDMDGQELDYFNIDESMRSGILVSDAELDAFLKEQSLQNSNTMSFGENASDSQL
                     QMNQIDMKGLCDENAGDRYFNAEAGAAGESGGVVICETTDKENTVQNGGLSVGEKSAI
                     PTERGLSASQPDIRSEVPVPSINTQAVGGARPKQLPSRPPGTSSSQGPSKPHVVGVPA
                     GEPSTANAAAAPTRPADHTPDSQVSFNSNYIDIESNFEGGSSFVTANKDSLPENIRKE
                     GLVLGQKQPTWVPDSEAPNCMNCKVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLE
                     KEARVCVICYETINKAQAFERMMSPGGACLKSNHSNECVTAQPLQETQTSSIPSPTAL
                     PISALKQPNVEGPCSREQKRVWFADGILPNGEVADTTKLSSGSKRCSDDFSPVLPDAP
                     TVINKVDHTPSPMVEKANNSVGDVLRSEITQSPICRAAPLEILPGSTGAEGLPTAGPF
                     TLEDDVFVDSEEPSTPTVVPANTGLPVASVSDYRLLCGVAKCVCNNISLLPDDDVGLP
                     PLLATSGEDGSVPVVQEHPSHEQIILLLESEGFPPATFVLNANLLVNVKLVFYSSDKY
                     WYFSTNGLHGLGQAEIIILLLCLPNEDTVPKDIFRLFITIYKDASKGKYVENLDNLTF
                     TESFLSSKDHGGFLFITPTFQKLDDLPVPRSPFLCGILIHKLEIPWAKAFPMRLMLRL
                     GAEYKAYPAPLTSVRGRRPLFGEIGHTIMNLLVDLRNYQYTLHNIDQLLIHMEMGKSC
                     IKIPRKKYSDVLKVINSSNEHVISIGASFSTEADSHLVCVQSDGVYQTQANSATGQPR
                     KVTGASFVVFNGALKTSSGFLAKSSIVEDGLMVQITPETMDGLRLALREQKDFKIQCG
                     KVDAVDLREYVDICWVDSEERKNKGVISSVDGMSLEGFPSEKIKLETDFETEEKTVKC
                     TEVFCFLKDQDISLSSSSYQFAKEIATACSAALCPHLRTLKSNRMNRIGLRVSVDTDM
                     VEFQAGCEGQLLPQHYLNDLDSALIPVIHGGTSNSTVPLEIELAFFILENLLE"
     exon            207..2479
                     /gene="Zfyve16"
                     /gene_synonym="RGD1564784"
                     /inference="alignment:Splign:2.1.0"
     exon            2480..2576
                     /gene="Zfyve16"
                     /gene_synonym="RGD1564784"
                     /inference="alignment:Splign:2.1.0"
     exon            2577..2738
                     /gene="Zfyve16"
                     /gene_synonym="RGD1564784"
                     /inference="alignment:Splign:2.1.0"
     exon            2739..2881
                     /gene="Zfyve16"
                     /gene_synonym="RGD1564784"
                     /inference="alignment:Splign:2.1.0"
     exon            2882..3260
                     /gene="Zfyve16"
                     /gene_synonym="RGD1564784"
                     /inference="alignment:Splign:2.1.0"
     exon            3261..3383
                     /gene="Zfyve16"
                     /gene_synonym="RGD1564784"
                     /inference="alignment:Splign:2.1.0"
     exon            3384..3539
                     /gene="Zfyve16"
                     /gene_synonym="RGD1564784"
                     /inference="alignment:Splign:2.1.0"
     exon            3540..3764
                     /gene="Zfyve16"
                     /gene_synonym="RGD1564784"
                     /inference="alignment:Splign:2.1.0"
     exon            3765..3847
                     /gene="Zfyve16"
                     /gene_synonym="RGD1564784"
                     /inference="alignment:Splign:2.1.0"
     exon            3848..3952
                     /gene="Zfyve16"
                     /gene_synonym="RGD1564784"
                     /inference="alignment:Splign:2.1.0"
     exon            3953..4100
                     /gene="Zfyve16"
                     /gene_synonym="RGD1564784"
                     /inference="alignment:Splign:2.1.0"
     exon            4101..4181
                     /gene="Zfyve16"
                     /gene_synonym="RGD1564784"
                     /inference="alignment:Splign:2.1.0"
     exon            4182..4344
                     /gene="Zfyve16"
                     /gene_synonym="RGD1564784"
                     /inference="alignment:Splign:2.1.0"
     exon            4345..4450
                     /gene="Zfyve16"
                     /gene_synonym="RGD1564784"
                     /inference="alignment:Splign:2.1.0"
     exon            4451..4618
                     /gene="Zfyve16"
                     /gene_synonym="RGD1564784"
                     /inference="alignment:Splign:2.1.0"
     exon            4619..5372
                     /gene="Zfyve16"
                     /gene_synonym="RGD1564784"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtcggcgtcg ggttgtccta ggtgttgtgg ccgggttacc ctgcacgcct cactgcggcg
       61 tcgcgtcgag tcccggagag ctcggcgggg tggggagaca taaaagaatt aaactgtgag
      121 taagcccgca gggaggatgg acagttactt taaagcagct gtcagtgact tggacaaact
      181 tcttgatgat tttgagcaga acccagaaaa acaagattac ttccaagatg tgcaggatgt
      241 ttatgctttt aaccagtgtt cagtttcttc agagttggcc tctccacagc tagctttact
      301 gtcaaaggac caaagatgca ttagtagtca tgcctcatca gaaacatgct gtgaagcaaa
      361 tgagactttt ctccaaggaa agatacctga ggggttaacc tctaaacaga atgaaaaaaa
      421 cgtagcggga cttgatcttc tttcttctgt ggatgctagt acttcagatg agatccagcc
      481 ttcatgtatg agacgatgta gtaagcctgt ctgtgacctg ataagtgaca tgggtaactt
      541 agtacacgcc accagtagtg aggaagacat taaacagtta ttgccagatg actcgaagtc
      601 tcctgcagat actttgatca cactggactc atcttcagtt tcagaggttt tgatcggatt
      661 ggatttgtct tcagtttcag atactctcgc tgtttcttca gtagacggtg gtagtcaggc
      721 tgtcaggaaa gagcaggata ccaacgctgg tgtgcaaagc agagataaca gtaggatcca
      781 agaatcgggt gcagaagtgg acatggcact ttctgattct tgtaaatata gtagaacaga
      841 aaatttaaag gataaaatga tttctaatga gttagaaaca gttgattttg gcatgccatc
      901 tgttttgact gaacagagtt cagaaatgtc caataccaaa gatagcccac aataccagag
      961 gctgccatgt gagctgttaa aagatgacgg tgatttggca gaagagaaag taggcatggc
     1021 aggcaatagt acaaagtgtt tagaagaagg aggtaacata attgctatgc cttgcaagct
     1081 tccaaaaaat gaagagatat ccccaaatga cccaacttca aaagatgaaa acttcaagtt
     1141 acctgacttt tctgtccagg aaagtagaac tgctgtgttc ataaagcaga ctgtggcaga
     1201 ggactcggta aagtcagacc ttaaagataa taatgatgtc gtccaagttt cttcttcatc
     1261 tctacatgtt tcgagtgatg gtgtgtcccc ttcactgtcc tgtctttcat tgtctgggtc
     1321 tttgtgtgga tccttagttg actgtaatgc acatggtgat tttttaccct ctgatgagtc
     1381 taaaggtcag aacaatgacg cagtaactgc acatgaggag atacagaaga gtgccgcttt
     1441 agatggggag acagatctcc tgaagaagga aaagcaggaa agcatgtttc ttcagccagt
     1501 aaatgataag gaaggggatg gagaggttga acttgaggag atggtaatca gcggtgagcc
     1561 tttggagtac cctgagggta ccaaccctgc cgcagctggc tctcaaatgg caccccctac
     1621 tgtgagtgcc tcagaggctc ctggtcagtg cgaagctctc actttttcca gtggcgatat
     1681 ggatgggcaa gagttagatt actttaatat tgatgaaagc atgagaagtg gcatactggt
     1741 tagcgatgct gaacttgatg cttttctgaa ggaacagagt cttcagaact ctaacaccat
     1801 gtcttttgga gaaaatgcaa gtgattcaca attgcagatg aatcagatag atatgaaagg
     1861 attatgtgat gaaaatgctg gtgatagata cttcaatgct gaagcaggag ctgctggcga
     1921 aagtggaggc gttgtgattt gtgaaacaac tgataaagaa aacacagtac aaaatggtgg
     1981 tctttctgta ggagaaaaaa gcgcaattcc aacggaaaga gggttatctg ctagtcagcc
     2041 tgacatacgg agtgaagtgc cagtccccag tattaacacc caggctgtcg gaggagctag
     2101 acctaagcag ctgccgagtc gtccaccagg aacaagcagt tcacagggac cgagtaagcc
     2161 acatgttgta ggtgtgccag caggcgagcc aagcacagca aatgctgctg ctgcacccac
     2221 tcgccctgca gatcatacac ctgattctca ggttagcttc aactccaatt atatcgacat
     2281 agaaagtaat ttcgaaggtg gatccagttt tgtaacagca aacaaggatt cactgcctga
     2341 gaatatacgg aaagaaggct tggttttggg ccagaaacaa cctacgtggg ttcctgattc
     2401 agaagctcca aactgtatga actgcaaagt caaattcact tttacaaaac ggcgacacca
     2461 ctgccgagct tgtgggaaag tattttgtgg tgtctgttgt aacaggaaat gtaagcttca
     2521 gtatctagaa aaggaagcaa gagtgtgtgt gatctgctat gagactatta ataaagctca
     2581 ggcatttgaa aggatgatga gtccaggtgg tgcttgtctt aagtctaatc attctaatga
     2641 gtgtgtcact gcccagccac ttcaggagac ccaaacgtcc agcatacctt cacctacagc
     2701 tttgcccatc tcagcactga aacaaccaaa tgtcgaagga ccatgttccc gagaacagaa
     2761 gagagtatgg tttgcagatg gcatactgcc gaatggtgaa gttgcagata ctacgaaatt
     2821 atcctctgga agtaaaaggt gttctgatga ctttagtcct gtcttacctg atgcgcccac
     2881 agtgataaat aaagtggacc ataccccctc tcctatggtg gagaaagcaa acaacagtgt
     2941 aggagacgtt ctaagaagtg agataactca gagtccgatt tgtcgtgctg cacctctgga
     3001 aatactgcct gggagcacag gcgctgaagg cttgcccaca gctggccctt tcacactaga
     3061 agatgatgtt tttgtggaca gtgaggagcc atctactcct actgttgtcc ctgctaatac
     3121 tggtttgcct gttgctagtg tttcagacta taggttattg tgtggtgttg ccaaatgtgt
     3181 ctgcaataac attagtcttc taccagatga cgatgttggt ttgcctcccc ttctggccac
     3241 atctggagaa gatggatcag tgcctgtagt acaagaacat ccatctcatg agcagatcat
     3301 tttgcttctt gaaagtgaag gatttcctcc tgccacattt gttctaaatg caaacctact
     3361 tgtgaatgtc aagttggtat tttattcctc agataagtat tggtacttct caaccaatgg
     3421 attgcatggt ttgggacagg cagaaattat tatcctgttg ctatgcttgc caaatgagga
     3481 tacagttcct aaggacatct ttagactatt catcaccata tataaggatg cttcgaaagg
     3541 gaagtacgta gaaaacttgg acaatctgac ctttactgag agttttctca gtagcaagga
     3601 tcacggaggg ttcctattca tcacacctac ctttcagaaa cttgacgatc tcccagtacc
     3661 aaggagccct tttctctgtg gcattctcat ccacaagctg gagattccct gggcaaaggc
     3721 tttccctatg cgtctcatgt tgagattagg cgcagaatac aaagcatatc ctgctcctct
     3781 aacaagtgtc agaggcagga gaccgctttt cggagaaata ggacatacta ttatgaactt
     3841 acttgttgat cttcgaaatt accagtatac attgcataac atcgatcagc tgttaatcca
     3901 tatggaaatg gggaaaagct gtataaagat acctcggaaa aagtacagtg atgtattgaa
     3961 ggtaataaat tcttctaacg agcacgtcat cagtattggg gctagtttta gtacagaagc
     4021 agattctcat ctggtctgtg tacagagtga tggagtttat cagactcagg ccaacagtgc
     4081 cactggtcag ccaaggaaag tgacaggtgc aagttttgtg gtgttcaatg gtgctctgaa
     4141 aacatcttca ggatttcttg ccaaatccag catagtcgaa gatggcttaa tggttcaaat
     4201 aaccccagag accatggatg gcttacggct ggctctacga gagcaaaagg actttaaaat
     4261 tcagtgtgga aaagttgatg cagtagacct gagagaatat gtggacatct gttgggtgga
     4321 ttcggaagaa aggaaaaaca aaggtgttat cagttcagtg gatgggatgt cattagaagg
     4381 atttccaagt gaaaaaataa aactggaaac agattttgaa actgaagaga agactgtgaa
     4441 atgcactgag gtgttctgct tcctaaagga ccaggatatc tctctctcct cgagtagtta
     4501 ccagtttgca aaagagatcg ccacggcttg cagtgcggcc ctgtgccctc acctgaggac
     4561 tctaaagagt aacagaatga acagaattgg actcagagtt tctgttgaca ctgatatggt
     4621 tgaatttcag gcaggctgtg aagggcagct tctgcctcag cattacctaa acgatcttga
     4681 tagcgctctg atacctgtga tccacggcgg gacctccaac tcgaccgtgc cactcgagat
     4741 agagttagca ttcttcattt tagaaaacct tctggagtga gagaacatac tgtgctctat
     4801 gttgcaaact gatatgttaa aatgaatccc agcactaaaa ctgaaatgtc acaacactaa
     4861 atatttgata attgaaatat ataattttgc tttttaggta ggaatgattt ttaaaaatca
     4921 ttagcactat atttaagtac ctaaaaattt aaagaatcac cattttcata gctttatgct
     4981 tattaaaaga acaaaggaga aatatttctt ctaacttaaa atttatagta tttactgtgt
     5041 aatttaaatg ttaagccaaa gtatctgcac ttagttatac ctctttatat atgattttaa
     5101 tgaaggagat acctgtttgt gtgtatgcta atgagaatac tggttttgaa gtctctttta
     5161 aaatgtattt cagtaacgaa gaccagtttc aagattctag acttacagtt ctttgactaa
     5221 agctgataac ttatttgtat aaatgggatg gagacctaca tccaggatta catacaaact
     5281 ctgattaaag ttagaatttt gcctttattt cttctcaaat tatatatatg catatgcata
     5341 tataaatata tcatttttcc tgattaaaat aa
//
