LOCUS       XM_039099947            7019 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zinc finger protein X-linked (Zfx),
            transcript variant X7, mRNA.
ACCESSION   XM_039099947
VERSION     XM_039099947.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039099947.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7019
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7019
                     /gene="Zfx"
                     /gene_synonym="RGD1562664"
                     /note="zinc finger protein X-linked; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 46
                     ESTs, 1 long SRA read, 24 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 135 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:367832"
                     /db_xref="RGD:1562664"
     CDS             597..2846
                     /gene="Zfx"
                     /gene_synonym="RGD1562664"
                     /codon_start=1
                     /product="zinc finger X-chromosomal protein isoform X3"
                     /protein_id="XP_038955875.1"
                     /db_xref="GeneID:367832"
                     /db_xref="RGD:1562664"
                     /translation="MDEDGLELQPQAPNSFFDATGAGATHMDGNQIVVEVQETVYVSD
                     VVDSDITVHNYVPDDPDSVVIQDVIEDVVIEDVQCTDIMDEADVSETVIIPEQVLDSD
                     VTEEVSLTHCTVPDDVLASDITSASISMPEHVLTSESIHVSDVSHVEHVVHDSVVEAE
                     IVTDPLTADVVSEEVLVADCASEAVIDANGVPVNQQDEDKANCEDYLMISCGTVDIVE
                     SEPENEHGVELLDPNNSMRVPREKMVYMAVNDTQQEEEELNVAEIADEVYMEVIVGEE
                     DAAAAAAAAVHEQQVEDNEMKTFMPIAWAAAYGNNSDGIENRNGTASALLHIDESAGL
                     GRLAKQKPKKRRRPDSRQYQTAIIIGPDGHPLTVYPCMICGKKFKSRGFLKRHMKNHP
                     EHLAKKKYRCTDCDYTTNKKISLHNHLESHKLTSKAEKAIECDECGKHFSHAGALFTH
                     KMVHKEKGANKMHKCKFCEYETAEQGLLNRHLLAVHSKNFPHICVECGKGFRHPSELK
                     KHMRIHTGEKPYECQYCEYRSADSSNLKTHVKTKHSKEMPFKCDICLLTFSDTKEVQQ
                     HALIHQESKTHQCLHCDHKSSNSSDLKRHIISVHTKDYPHKCDMCDKGFHRPSELKKH
                     VAAHKGKKMHQCRHCDFKIADPFVLSRHILSVHTKDLPFRCKRCRKGFRQQSELKKHM
                     KTHSGRKVYQCEYCEYSTTDASGFKRHVISIHTKDYPHRCEYCKKGFRRPSEKNQHIM
                     RHHKEVGLP"
ORIGIN      
        1 caaacatggt ggggggtggc ccgggcctcc cgcctctcga cggggtcggc ggaccacggc
       61 ctcgtgcgga ctttacagcc gaggcggcgg tggcagcggc gtgtgtgtgg cagcggtggc
      121 gggcgggagc gcggaggtgg aaagaagggg ggcgctgtca cggaaactca ggccgcccga
      181 gaccccgccg cagcgaggcc acggggctcc ccggttgcgg ggcgtgaacg gtgccaaccc
      241 ggggcgtcag agggacccac cgggcggagg agggggccca tctatccttc cgcattttcc
      301 tgggtctctc tccccggcgg tgacgtgacg tgctgacggc gggcccgtgc cggggagctg
      361 ggccgctttt tgtcagctcc gagctcggcc cctcctccct ccctccgccc gccccaccag
      421 ccggagcccg gcccagtgct ccagagaaag gccggcctgc agcacccgcc accgtcgccg
      481 accgccgcac gactgtccgg tgcgtataac tgtgcccagc taaccttgta agatgaattg
      541 gggagcattc cctctttttt gaaacaggtg ttctggctga tgagaattta aaggccatgg
      601 atgaagatgg acttgaatta caaccacaag caccaaactc attttttgat gcaacaggag
      661 ctggtgctac acacatggat ggaaatcaaa ttgttgtgga agtacaagaa acggtttatg
      721 tgtcagatgt tgtggattca gacataaccg ttcataacta cgttcccgat gacccagact
      781 cagttgtaat ccaagatgtt attgaggatg ttgttataga agatgtccaa tgtacagata
      841 tcatggacga agcagatgtg tccgaaacag tcatcatccc tgaacaagtc ctggattcag
      901 atgtaaccga agaagtttct ttaacgcatt gcacagttcc agatgatgtt ttagcttccg
      961 atattacttc agcctcaata tctatgcctg aacatgtctt gacaagtgaa tctatacatg
     1021 tgtctgacgt tagtcacgtt gaacatgtgg ttcatgatag tgtagtagaa gcagaaatcg
     1081 tcacagatcc tctgaccgct gatgttgttt cggaagaagt gctggtagca gactgtgcct
     1141 ctgaagcagt catagatgcc aacggggtcc ctgtgaacca gcaggatgaa gacaaagcca
     1201 actgtgagga ctaccttatg atctcttgtg gaaccgtaga cattgtggaa agcgagcctg
     1261 agaacgagca tggggttgaa ctgcttgatc caaacaacag tatgcgtgtt cccagagaaa
     1321 agatggttta tatggctgtt aatgacactc agcaagaaga ggaagaattg aatgttgctg
     1381 aaattgctga tgaagtttat atggaagtga ttgttggaga ggaggatgct gcagccgcag
     1441 ctgcagccgc agtgcatgaa cagcaagtgg aggacaacga aatgaaaacc ttcatgccga
     1501 ttgcgtgggc agctgcttac ggtaataatt ctgatggaat tgaaaaccgg aatggcactg
     1561 caagtgccct cttgcacata gatgagtctg ctggcctcgg cagactggct aaacaaaaac
     1621 caaagaaaag gagaagacct gattccaggc agtaccaaac agcaataatt attggcccag
     1681 atggacatcc tctcactgtc tacccttgca tgatttgtgg caagaagttt aaatcgagag
     1741 gtttcttaaa aagacacatg aaaaaccatc ctgaacacct tgccaagaaa aagtaccgct
     1801 gtactgactg tgattacact accaacaaga agataagttt acacaatcac ctggagagcc
     1861 acaagctaac cagcaaggca gagaaagcca tagaatgcga tgagtgtgga aagcatttct
     1921 ctcatgctgg ggctttgttt actcataaaa tggtgcataa ggaaaaagga gccaacaaga
     1981 tgcacaagtg taagttctgt gaatatgaaa cagctgaaca aggcctattg aatcgccacc
     2041 ttttggcagt ccacagcaag aattttcctc atatttgtgt agagtgtggc aaaggtttcc
     2101 gtcatccatc agagctcaaa aagcacatgc gaatccatac tggagaaaag ccctatgaat
     2161 gccagtactg cgaatacagg tccgcagatt cttctaactt gaaaacacat gtaaaaacta
     2221 agcatagtaa agagatgcca ttcaagtgtg acatttgtct tctgactttc tcagatacca
     2281 aagaggtgca acaacatgct cttatccatc aagagagcaa aactcaccag tgtttgcatt
     2341 gtgaccacaa gagttcaaac tcaagtgatt tgaagcgaca cataatttca gttcatacta
     2401 aggactatcc tcataagtgt gacatgtgcg ataaaggctt tcacaggcct tcagaactca
     2461 agaaacatgt ggctgcccac aagggtaaaa aaatgcacca gtgtagacat tgtgacttta
     2521 agattgcaga tccgtttgta ctaagtcgcc atattctctc ggttcataca aaggaccttc
     2581 catttaggtg taagagatgt agaaagggat ttcggcaaca aagtgagctt aaaaagcata
     2641 tgaagaccca cagtggccgg aaggtatatc agtgtgagta ctgtgaatat agcactacag
     2701 atgcgtcagg ctttaagcgg cacgttatct ccattcatac gaaagactat cctcaccgct
     2761 gtgagtactg caagaaagga ttccgaagac cctcggaaaa gaaccagcac ataatgcgac
     2821 atcataaaga agttggcctg ccctaaccgt actcttcaca gctgtttgta gagaaactgg
     2881 ccttgaaaca gaaaattcat ttaaaagcca atcagtcttg ttcacttaca atactgtata
     2941 ttgatttatg ctgtgtacaa ataggattat tgcttctagt tgactttgtt tttacgtttt
     3001 gttcaatagt gtgttctgaa ttctattcag tttgtttaat acatgggaaa aagcagcaac
     3061 aagttagttg cttttactaa agtaatccct gattctatac tgaagttttc tatcttagaa
     3121 gttttatatt tattttaaaa tatttacctt gcttaccttg atggtactct tgtaagacca
     3181 gttaactcat ggtaactctg cagtggtaac tgaaaggatt catgtggact ttttgtctca
     3241 caaatttctc acaattaaat cgtcagagac atctaatgga atgggagatt tttgtatggt
     3301 gaggtctcat gatagtaaca tggaagtcat ttatttgtct tgtttagtat tgtagactgt
     3361 atgacaatga aagttttcat atgaactttt gtgtccccag catcgctgcg taaaagagca
     3421 gtggctgggt ttgtgtttac ttttcttttt gatttttttt ttccttttta gtggagaaaa
     3481 tatacttttt ttttccttta gactctttac atcttttgtc agtgtagtaa acttttagaa
     3541 aaccttgttg gaaatttttg cttgatcttg ttgtattttg attattttat ctgtgctgct
     3601 ttgtcttgga atggttgtgt gctccaaatg aaatttaact gaagactgca ttttggaatc
     3661 tcctaggggt aacttgtggc tcataggatc ttttgcaact ttatatatgt aaatgtaccc
     3721 tgaattatat atatctatct atatatacac atatatatgt aacatgtatc tgtgtgtatt
     3781 gcttatttta catacttata cacacaaccc ccagtagtag ttctttaaaa tctataatga
     3841 aaagtattaa atttacagaa acgtgaaaga tccagggatg catgagagag cattttgtaa
     3901 gtcttgctct tcagagagac tactcaggtg aagaattaga aggaaaataa ggacactagt
     3961 atttttaaag agtaaaggta ttttctttta aatatctttg gtaattgaaa aataattgaa
     4021 aaatagaggt taagatgttt atagatacaa tgttttcata cagtttcaac tccatgcctt
     4081 tatatttttc tgaaaagcta atgggtatcc agacatgaat cccccagttc tctctgataa
     4141 gccggagaga gagctcttgt ctgaccaagc gagggagaca gaaagggagt gatggctcca
     4201 tggaccagag aacgggtgct aataaggact tagacttggc taattgagcc tgctctgtta
     4261 gttcttagtt aacttgaaaa acttaacact cgcttgtctt ggattacatg atagaggtgt
     4321 agtccaagtg tgtgaacagt ctgaggcctc actcggatcc tcactaagtc tttcacagtt
     4381 ttgcttttga gagctggcaa ttcgtaacat acaggtctga tcgctgatga aatttgtaaa
     4441 aataagttgg acattaagag ttttgttaag atgtcttttt ggaaaacagt ttctagagtc
     4501 cctggaattg gctgttggca cacgggtctg gcacatcacg ggaaacttag aagtttcttc
     4561 ccactcgata gctgccttgc tgcctcatta tggtgctcca tccctttcgt gccgttagtt
     4621 tttaccttcc acccttctct ttgtcatcaa gatttgtatt caaaagttat atttttgggg
     4681 ttagatgtct tgagtatttg gtgtttggca aacctctgaa gtgctagatt gatttagtct
     4741 agttctaaat caaattctta aggctggtat gaactccatt ctcaatgcca gtcaatgcca
     4801 aggcatggat tccctagact ttccatctga taagggaatc attttgcctt tgtagcctcc
     4861 gcaatgtgct ttaaaaaata catcataact atgatttgtt ttattgccct gttattcttg
     4921 aaagctgtcc tttttttgtg agaactttta aaatctactt tattattttc cccagaagta
     4981 acgtaaaaca cctaacattg aaatttatga aatttaaaaa tcatctacaa tcagtacaga
     5041 acaaatgatt ggactattta acatatattt ttttaaataa actgaaaaat aaggaacaca
     5101 acactttaca tactttatat ttctctttac ataatctgga accacacgca gttcttttct
     5161 ttttaaagca caatattgaa gcctttaaaa ggtatttaag ggtttggtca agtgaataga
     5221 aaatgtgtct gtataaaaag aaaatgaagt agtcactgtt atgtactgac attagttaca
     5281 acctagtttt aattcttaaa acaattttga ttagcaaagc taaaaaagga tgtttcagtt
     5341 aaatgtttta aagaggtaca gatttttaca aggacataat ataagttatt gttctgtaga
     5401 aatatcctat taaatattgt atgtccctcc ctctgtatac tttgtaaaaa aagtaaaata
     5461 cataaaaagg aaatcatata ggggatgtgt gacattattg taattgtgta cttgagaata
     5521 acgtgcaaaa ataaaaatca gaatattttc ctgttaacga atgttcagtc tatttgatac
     5581 cagtactaag ttaaagcttt ttcttaagaa agaaaatgta cagtttttgt aaacctaata
     5641 aacatcaaaa gcagtggatt attttcatcc cctatttctt aattcctttt atgcagcagt
     5701 ggaatgcaaa gtgcttggtt gctttgaatt ttgtgacttg gatgcaaata ctgatatttc
     5761 agtcctgtga atttgcaagt aacattgaga agttaagagg tgattggtga gtcctttgat
     5821 gagcatgtcc ttgaaattca ttttttcctt tatctctgta aatggttcgt tttattagca
     5881 tctgattcct gttataaatt gcccatccat aaagtgggtt ttgaaagcac ttaagatttg
     5941 ttttattatc aattcataac aaatttagtc tgaggtccta ccttaagttc cccatttgtg
     6001 cccaggttag atgcctctag tagactcaaa tcttggagga tggtcactgt ggtagtgaaa
     6061 gtcaggaatc ctgagagatg tgcagcactt cgattttaac aatgagattc tgtaatccag
     6121 aaactagtgt tggtctaaga gagctgagat gacaagtagc caaaacttga ggtacatgtc
     6181 tatgagaatg tggtggacgt cagtcaagtc agtcagtcac gagtctgaga aaacctgatc
     6241 tcactcattc tgctaaaatg tgctgcccta ttgtcgctgg ggatctctgt attaatttcc
     6301 tgcaaaatct tacgtttgtg taaggaaacg caagatcagt cagcatctta aagagaatcc
     6361 atgacagaat aatgcctgtc agcaaggtag tctgccctct tagtccagtc ctcagggaag
     6421 tgggacaagg catgagcccc ggcagccttt aattctgctg cctgctcaac ttcagtgata
     6481 gtgatcttag agcacttgag gagcctaaag attacttagg tgatggttcg tgtagtagtc
     6541 aagaagctca ccaaaagcag ctagtgatgg cacagtgaga gtaagttaga atccagagac
     6601 tttttggctt taccgttttt gtaaaagtct tgagtcctat cagtcactaa gtacatcctt
     6661 cagtgcacat ctgaacagct tgtacctcct actcttacgt agcccccaat gttgcattcc
     6721 tcaaacacag gaagacttga taagtaaaga gaaggactga aaattgtgtg ttctcgtgtg
     6781 tgtttaattg gcccagagtt actaaggtaa ttcatattaa aaaggacatt ttgctgcatt
     6841 ttacaacttt ttaggaggtc aaagttaagt ttgccctatg aattttgttt ttatcttttg
     6901 tttcatgtat atattgtttg cctttttcat aaaaataatt cttggatttg ttatatattg
     6961 ttcctgttat ttttgacatc tttgctattg taaataaatt cctattttgt tttaagtta
//
