LOCUS       NM_001109017            7107 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus zinc finger protein X-linked (Zfx), mRNA.
ACCESSION   NM_001109017 XM_001065337 XM_006257031 XM_346318
VERSION     NM_001109017.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 7107)
  AUTHORS   Murphy,W.J., Eizirik,E., Johnson,W.E., Zhang,Y.P., Ryder,O.A. and
            O'Brien,S.J.
  TITLE     Molecular phylogenetics and the origins of placental mammals
  JOURNAL   Nature 409 (6820), 614-618 (2001)
   PUBMED   11214319
REFERENCE   2  (bases 1 to 7107)
  AUTHORS   Luoh,S.W., Bain,P.A., Polakiewicz,R.D., Goodheart,M.L., Gardner,H.,
            Jaenisch,R. and Page,D.C.
  TITLE     Zfx mutation results in small animal size and reduced germ cell
            number in male and female mice
  JOURNAL   Development 124 (11), 2275-2284 (1997)
   PUBMED   9187153
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000021.1.
            
            On Feb 10, 2021 this sequence version replaced NM_001109017.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments. This transcript is based on
            transcript alignments from orthologous data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643298.32026.1,
                                           SRR26643292.65464.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760400,
                                           SAMN12840105 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-505               JAXUCZ010000021.1  62846205-62846709   c
            506-595             JAXUCZ010000021.1  62824310-62824399   c
            596-1165            JAXUCZ010000021.1  62820202-62820771   c
            1166-1315           JAXUCZ010000021.1  62806058-62806207   c
            1316-1459           JAXUCZ010000021.1  62805733-62805876   c
            1460-1609           JAXUCZ010000021.1  62805240-62805389   c
            1610-1750           JAXUCZ010000021.1  62804587-62804727   c
            1751-7107           JAXUCZ010000021.1  62798483-62803839   c
FEATURES             Location/Qualifiers
     source          1..7107
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq22"
     gene            1..7107
                     /gene="Zfx"
                     /gene_synonym="RGD1562664"
                     /note="zinc finger protein X-linked"
                     /db_xref="GeneID:367832"
                     /db_xref="RGD:1562664"
     exon            1..505
                     /gene="Zfx"
                     /gene_synonym="RGD1562664"
                     /inference="alignment:Splign:2.1.0"
     exon            506..595
                     /gene="Zfx"
                     /gene_synonym="RGD1562664"
                     /inference="alignment:Splign:2.1.0"
     CDS             535..2934
                     /gene="Zfx"
                     /gene_synonym="RGD1562664"
                     /codon_start=1
                     /product="zinc finger X-chromosomal protein"
                     /protein_id="NP_001102487.2"
                     /db_xref="GeneID:367832"
                     /db_xref="RGD:1562664"
                     /translation="MDEDGLELQPQAPNSFFDATGAGATHMDGNQIVVEVQETVYVSD
                     VVDSDITVHNYVPDDPDSVVIQDVIEDVVIEDVQCTDIMDEADVSETVIIPEQVLDSD
                     VTEEVSLTHCTVPDDVLASDITSASISMPEHVLTSESIHVSDVSHVEHVVHDSVVEAE
                     IVTDPLTADVVSEEVLVADCASEAVIDANGVPVNQQDEDKANCEDYLMISLDDAGKIE
                     HDGSSGLTMDNETEIDPCKVDGTCPEVIKVYIFKADPGEDDLGGTVDIVESEPENEHG
                     VELLDPNNSMRVPREKMVYMAVNDTQQEEEELNVAEIADEVYMEVIVGEEDAAAAAAA
                     AVHEQQVEDNEMKTFMPIAWAAAYGNNSDGIENRNGTASALLHIDESAGLGRLAKQKP
                     KKRRRPDSRQYQTAIIIGPDGHPLTVYPCMICGKKFKSRGFLKRHMKNHPEHLAKKKY
                     RCTDCDYTTNKKISLHNHLESHKLTSKAEKAIECDECGKHFSHAGALFTHKMVHKEKG
                     ANKMHKCKFCEYETAEQGLLNRHLLAVHSKNFPHICVECGKGFRHPSELKKHMRIHTG
                     EKPYECQYCEYRSADSSNLKTHVKTKHSKEMPFKCDICLLTFSDTKEVQQHALIHQES
                     KTHQCLHCDHKSSNSSDLKRHIISVHTKDYPHKCDMCDKGFHRPSELKKHVAAHKGKK
                     MHQCRHCDFKIADPFVLSRHILSVHTKDLPFRCKRCRKGFRQQSELKKHMKTHSGRKV
                     YQCEYCEYSTTDASGFKRHVISIHTKDYPHRCEYCKKGFRRPSEKNQHIMRHHKEVGL
                     P"
     exon            596..1165
                     /gene="Zfx"
                     /gene_synonym="RGD1562664"
                     /inference="alignment:Splign:2.1.0"
     exon            1166..1315
                     /gene="Zfx"
                     /gene_synonym="RGD1562664"
                     /inference="alignment:Splign:2.1.0"
     exon            1316..1459
                     /gene="Zfx"
                     /gene_synonym="RGD1562664"
                     /inference="alignment:Splign:2.1.0"
     exon            1460..1609
                     /gene="Zfx"
                     /gene_synonym="RGD1562664"
                     /inference="alignment:Splign:2.1.0"
     exon            1610..1750
                     /gene="Zfx"
                     /gene_synonym="RGD1562664"
                     /inference="alignment:Splign:2.1.0"
     exon            1751..7107
                     /gene="Zfx"
                     /gene_synonym="RGD1562664"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcccacaaa catggtgggg ggtggcccgg gcctcccgcc tctcgacggg gtcggcggac
       61 cacggcctcg tgcggacttt acagccgagg cggcggtggc agcggcgtgt gtgtggcagc
      121 ggtggcgggc gggagcgcgg aggtggaaag aaggggggcg ctgtcacgga aactcaggcc
      181 gcccgagacc ccgccgcagc gaggccacgg ggctccccgg ttgcggggcg tgaacggtgc
      241 caacccgggg cgtcagaggg acccaccggg cggaggaggg ggcccatcta tccttccgca
      301 ttttcctggg tctctctccc cggcggtgac gtgacgtgct gacggcgggc ccgtgccggg
      361 gagctgggcc gctttttgtc agctccgagc tcggcccctc ctccctccct ccgcccgccc
      421 caccagccgg agcccggccc agtgctccag agaaaggccg gcctgcagca cccgccaccg
      481 tcgccgaccg ccgcacgact gtccggtgtt ctggctgatg agaatttaaa ggccatggat
      541 gaagatggac ttgaattaca accacaagca ccaaactcat tttttgatgc aacaggagct
      601 ggtgctacac acatggatgg aaatcaaatt gttgtggaag tacaagaaac ggtttatgtg
      661 tcagatgttg tggattcaga cataaccgtt cataactacg ttcccgatga cccagactca
      721 gttgtaatcc aagatgttat tgaggatgtt gttatagaag atgtccaatg tacagatatc
      781 atggacgaag cagatgtgtc cgaaacagtc atcatccctg aacaagtcct ggattcagat
      841 gtaaccgaag aagtttcttt aacgcattgc acagttccag atgatgtttt agcttccgat
      901 attacttcag cctcaatatc tatgcctgaa catgtcttga caagtgaatc tatacatgtg
      961 tctgacgtta gtcacgttga acatgtggtt catgatagtg tagtagaagc agaaatcgtc
     1021 acagatcctc tgaccgctga tgttgtttcg gaagaagtgc tggtagcaga ctgtgcctct
     1081 gaagcagtca tagatgccaa cggggtccct gtgaaccagc aggatgaaga caaagccaac
     1141 tgtgaggact accttatgat ctctttggat gatgctggta aaatagaaca tgatggttca
     1201 tctggactga ctatggacaa cgaaacagaa attgatcctt gtaaagtgga tggcacttgc
     1261 cctgaagtca tcaaggtgta catttttaaa gctgatcctg gagaagatga cttaggtgga
     1321 accgtagaca ttgtggaaag cgagcctgag aacgagcatg gggttgaact gcttgatcca
     1381 aacaacagta tgcgtgttcc cagagaaaag atggtttata tggctgttaa tgacactcag
     1441 caagaagagg aagaattgaa tgttgctgaa attgctgatg aagtttatat ggaagtgatt
     1501 gttggagagg aggatgctgc agccgcagct gcagccgcag tgcatgaaca gcaagtggag
     1561 gacaacgaaa tgaaaacctt catgccgatt gcgtgggcag ctgcttacgg taataattct
     1621 gatggaattg aaaaccggaa tggcactgca agtgccctct tgcacataga tgagtctgct
     1681 ggcctcggca gactggctaa acaaaaacca aagaaaagga gaagacctga ttccaggcag
     1741 taccaaacag caataattat tggcccagat ggacatcctc tcactgtcta cccttgcatg
     1801 atttgtggca agaagtttaa atcgagaggt ttcttaaaaa gacacatgaa aaaccatcct
     1861 gaacaccttg ccaagaaaaa gtaccgctgt actgactgtg attacactac caacaagaag
     1921 ataagtttac acaatcacct ggagagccac aagctaacca gcaaggcaga gaaagccata
     1981 gaatgcgatg agtgtggaaa gcatttctct catgctgggg ctttgtttac tcataaaatg
     2041 gtgcataagg aaaaaggagc caacaagatg cacaagtgta agttctgtga atatgaaaca
     2101 gctgaacaag gcctattgaa tcgccacctt ttggcagtcc acagcaagaa ttttcctcat
     2161 atttgtgtag agtgtggcaa aggtttccgt catccatcag agctcaaaaa gcacatgcga
     2221 atccatactg gagaaaagcc ctatgaatgc cagtactgcg aatacaggtc cgcagattct
     2281 tctaacttga aaacacatgt aaaaactaag catagtaaag agatgccatt caagtgtgac
     2341 atttgtcttc tgactttctc agataccaaa gaggtgcaac aacatgctct tatccatcaa
     2401 gagagcaaaa ctcaccagtg tttgcattgt gaccacaaga gttcaaactc aagtgatttg
     2461 aagcgacaca taatttcagt tcatactaag gactatcctc ataagtgtga catgtgcgat
     2521 aaaggctttc acaggccttc agaactcaag aaacatgtgg ctgcccacaa gggtaaaaaa
     2581 atgcaccagt gtagacattg tgactttaag attgcagatc cgtttgtact aagtcgccat
     2641 attctctcgg ttcatacaaa ggaccttcca tttaggtgta agagatgtag aaagggattt
     2701 cggcaacaaa gtgagcttaa aaagcatatg aagacccaca gtggccggaa ggtatatcag
     2761 tgtgagtact gtgaatatag cactacagat gcgtcaggct ttaagcggca cgttatctcc
     2821 attcatacga aagactatcc tcaccgctgt gagtactgca agaaaggatt ccgaagaccc
     2881 tcggaaaaga accagcacat aatgcgacat cataaagaag ttggcctgcc ctaaccgtac
     2941 tcttcacagc tgtttgtaga gaaactggcc ttgaaacaga aaattcattt aaaagccaat
     3001 cagtcttgtt cacttacaat actgtatatt gatttatgct gtgtacaaat aggattattg
     3061 cttctagttg actttgtttt tacgttttgt tcaatagtgt gttctgaatt ctattcagtt
     3121 tgtttaatac atgggaaaaa gcagcaacaa gttagttgct tttactaaag taatccctga
     3181 ttctatactg aagttttcta tcttagaagt tttatattta ttttaaaata tttaccttgc
     3241 ttaccttgat ggtactcttg taagaccagt taactcatgg taactctgca gtggtaactg
     3301 aaaggattca tgtggacttt ttgtctcaca aatttctcac aattaaatcg tcagagacat
     3361 ctaatggaat gggagatttt tgtatggtga ggtctcatga tagtaacatg gaagtcattt
     3421 atttgtcttg tttagtattg tagactgtat gacaatgaaa gttttcatat gaacttttgt
     3481 gtccccagca tcgctgcgta aaagagcagt ggctgggttt gtgtttactt ttctttttga
     3541 tttttttttt cctttttagt ggagaaaata tacttttttt ttcctttaga ctctttacat
     3601 cttttgtcag tgtagtaaac ttttagaaaa ccttgttgga aatttttgct tgatcttgtt
     3661 gtattttgat tattttatct gtgctgcttt gtcttggaat ggttgtgtgc tccaaatgaa
     3721 atttaactga agactgcatt ttggaatctc ctaggggtaa cttgtggctc ataggatctt
     3781 ttgcaacttt atatatgtaa atgtaccctg aattatatat atctatctat atatacacat
     3841 atatatgtaa catgtatctg tgtgtattgc ttattttaca tacttataca cacaaccccc
     3901 agtagtagtt ctttaaaatc tataatgaaa agtattaaat ttacagaaac gtgaaagatc
     3961 cagggatgca tgagagagca ttttgtaagt cttgctcttc agagagacta ctcaggtgaa
     4021 gaattagaag gaaaataagg acactagtat ttttaaagag taaaggtatt ttcttttaaa
     4081 tatctttggt aattgaaaaa taattgaaaa atagaggtta agatgtttat agatacaatg
     4141 ttttcataca gtttcaactc catgccttta tatttttctg aaaagctaat gggtatccag
     4201 acatgaatcc cccagttctc tctgataagc cggagagaga gctcttgtct gaccaagcga
     4261 gggagacaga aagggagtga tggctccatg gaccagagaa cgggtgctaa taaggactta
     4321 gacttggcta attgagcctg ctctgttagt tcttagttaa cttgaaaaac ttaacactcg
     4381 cttgtcttgg attacatgat agaggtgtag tccaagtgtg tgaacagtct gaggcctcac
     4441 tcggatcctc actaagtctt tcacagtttt gcttttgaga gctggcaatt cgtaacatac
     4501 aggtctgatc gctgatgaaa tttgtaaaaa taagttggac attaagagtt ttgttaagat
     4561 gtctttttgg aaaacagttt ctagagtccc tggaattggc tgttggcaca cgggtctggc
     4621 acatcacggg aaacttagaa gtttcttccc actcgatagc tgccttgctg cctcattatg
     4681 gtgctccatc cctttcgtgc cgttagtttt taccttccac ccttctcttt gtcatcaaga
     4741 tttgtattca aaagttatat ttttggggtt agatgtcttg agtatttggt gtttggcaaa
     4801 cctctgaagt gctagattga tttagtctag ttctaaatca aattcttaag gctggtatga
     4861 actccattct caatgccagt caatgccaag gcatggattc cctagacttt ccatctgata
     4921 agggaatcat tttgcctttg tagcctccgc aatgtgcttt aaaaaataca tcataactat
     4981 gatttgtttt attgccctgt tattcttgaa agctgtcctt tttttgtgag aacttttaaa
     5041 atctacttta ttattttccc cagaagtaac gtaaaacacc taacattgaa atttatgaaa
     5101 tttaaaaatc atctacaatc agtacagaac aaatgattgg actatttaac atatattttt
     5161 ttaaataaac tgaaaaataa ggaacacaac actttacata ctttatattt ctctttacat
     5221 aatctggaac cacacgcagt tcttttcttt ttaaagcaca atattgaagc ctttaaaagg
     5281 tatttaaggg tttggtcaag tgaatagaaa atgtgtctgt ataaaaagaa aatgaagtag
     5341 tcactgttat gtactgacat tagttacaac ctagttttaa ttcttaaaac aattttgatt
     5401 agcaaagcta aaaaaggatg tttcagttaa atgttttaaa gaggtacaga tttttacaag
     5461 gacataatat aagttattgt tctgtagaaa tatcctatta aatattgtat gtccctccct
     5521 ctgtatactt tgtaaaaaaa gtaaaataca taaaaaggaa atcatatagg ggatgtgtga
     5581 cattattgta attgtgtact tgagaataac gtgcaaaaat aaaaatcaga atattttcct
     5641 gttaacgaat gttcagtcta tttgatacca gtactaagtt aaagcttttt cttaagaaag
     5701 aaaatgtaca gtttttgtaa acctaataaa catcaaaagc agtggattat tttcatcccc
     5761 tatttcttaa ttccttttat gcagcagtgg aatgcaaagt gcttggttgc tttgaatttt
     5821 gtgacttgga tgcaaatact gatatttcag tcctgtgaat ttgcaagtaa cattgagaag
     5881 ttaagaggtg attggtgagt cctttgatga gcatgtcctt gaaattcatt ttttccttta
     5941 tctctgtaaa tggttcgttt tattagcatc tgattcctgt tataaattgc ccatccataa
     6001 agtgggtttt gaaagcactt aagatttgtt ttattatcaa ttcataacaa atttagtctg
     6061 aggtcctacc ttaagttccc catttgtgcc caggttagat gcctctagta gactcaaatc
     6121 ttggaggatg gtcactgtgg tagtgaaagt caggaatcct gagagatgtg cagcacttcg
     6181 attttaacaa tgagattctg taatccagaa actagtgttg gtctaagaga gctgagatga
     6241 caagtagcca aaacttgagg tacatgtcta tgagaatgtg gtggacgtca gtcaagtcag
     6301 tcagtcacga gtctgagaaa acctgatctc actcattctg ctaaaatgtg ctgccctatt
     6361 gtcgctgggg atctctgtat taatttcctg caaaatctta cgtttgtgta aggaaacgca
     6421 agatcagtca gcatcttaaa gagaatccat gacagaataa tgcctgtcag caaggtagtc
     6481 tgccctctta gtccagtcct cagggaagtg ggacaaggca tgagccccgg cagcctttaa
     6541 ttctgctgcc tgctcaactt cagtgatagt gatcttagag cacttgagga gcctaaagat
     6601 tacttaggtg atggttcgtg tagtagtcaa gaagctcacc aaaagcagct agtgatggca
     6661 cagtgagagt aagttagaat ccagagactt tttggcttta ccgtttttgt aaaagtcttg
     6721 agtcctatca gtcactaagt acatccttca gtgcacatct gaacagcttg tacctcctac
     6781 tcttacgtag cccccaatgt tgcattcctc aaacacagga agacttgata agtaaagaga
     6841 aggactgaaa attgtgtgtt ctcgtgtgtg tttaattggc ccagagttac taaggtaatt
     6901 catattaaaa aggacatttt gctgcatttt acaacttttt aggaggtcaa agttaagttt
     6961 gccctatgaa ttttgttttt atcttttgtt tcatgtatat attgtttgcc tttttcataa
     7021 aaataattct tggatttgtt atatattgtt cctgttattt ttgacatctt tgctattgta
     7081 aataaattcc tattttgttt taagtta
//
