LOCUS       NM_001401804            4998 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus zinc finger translocation associated (Zfta),
            transcript variant 1, mRNA.
ACCESSION   NM_001401804 XM_039087882
VERSION     NM_001401804.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4998)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Feb 25, 2022 this sequence version replaced XM_039087882.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760383,
                              SAMEA5760386 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-302               JAXUCZ010000001.1  214033720-214034021
            303-800             JAXUCZ010000001.1  214036008-214036505
            801-1190            JAXUCZ010000001.1  214037204-214037593
            1191-1745           JAXUCZ010000001.1  214037861-214038415
            1746-4998           JAXUCZ010000001.1  214038599-214041851
FEATURES             Location/Qualifiers
     source          1..4998
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q43"
     gene            1..4998
                     /gene="Zfta"
                     /gene_synonym="RGD1560108"
                     /note="zinc finger translocation associated"
                     /db_xref="GeneID:499309"
                     /db_xref="RGD:1560108"
     exon            1..302
                     /gene="Zfta"
                     /gene_synonym="RGD1560108"
                     /inference="alignment:Splign:2.1.0"
     CDS             164..2200
                     /gene="Zfta"
                     /gene_synonym="RGD1560108"
                     /note="isoform 1 is encoded by transcript variant 1;
                     uncharacterized protein C11orf95 homolog"
                     /codon_start=1
                     /product="zinc finger translocation-associated protein
                     isoform 1"
                     /protein_id="NP_001388733.1"
                     /db_xref="GeneID:499309"
                     /db_xref="RGD:1560108"
                     /translation="MEPGGDHRSRSGGGRGGPGPAVASARGRRLPPTAASSGTEPEED
                     DGGQALQLEGGALGSWGSTPLPSSRARGPASSGRKYSDHCEARASRPGKSRIPGRDHR
                     RYYHDHWRLEYLMDFIPSRHGMVCMVCGSSLATLKLSTIKRHIRQKHPYSLHWSPREK
                     EVISNSWDAHLGLGARGEAESLGARGAEEEEEEEDEEEEEGANLQACPPKGSGKAPAG
                     GGCRRQRRGVRGGPVAPRRRRLAASRRAGGSRGLGARRLERRLKESLQNWFRAECLMD
                     YDPRGNRLVCMACGRALPSLHLDDIRAHVLEVHPSSLGLSGPQRSALLQAWGDQPEAL
                     SELTPPSPDDDLVPQDLTRKSRDSAPAAGAPSSQDLSPPDVKEEAGWVPERPGPAEEE
                     AEEGEGEGERAGIPGRPRRGRDHRRHYQERWRLEYLMELDGCRRGLVCMVCGGALASL
                     KMSTIKRHIRQRHPGSNSLSGPVKALIAQEWSEKAAHLLGLGLPRPESPSGPVAPSTA
                     SASEEGGGAEEAEPEEEWWGDAPLSPGAPSERPAEEEDEDDSQEPRGLPFPPPPLPPP
                     PPPPPPRSREQRRNYQPRWRGEYLMDYDGSRRGLVCMVCGGALATLKVSTIKRHILQV
                     HPFSMDFTPEERQTILEAYEEAALRCYGHEGFGPPAPAPRDSGADLKPGAVCRA"
     exon            303..800
                     /gene="Zfta"
                     /gene_synonym="RGD1560108"
                     /inference="alignment:Splign:2.1.0"
     exon            801..1190
                     /gene="Zfta"
                     /gene_synonym="RGD1560108"
                     /inference="alignment:Splign:2.1.0"
     exon            1191..1745
                     /gene="Zfta"
                     /gene_synonym="RGD1560108"
                     /inference="alignment:Splign:2.1.0"
     exon            1746..4998
                     /gene="Zfta"
                     /gene_synonym="RGD1560108"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agcccgcgct gcctagcgag cagctagccg tccgtgcggc cggctgccgg tgaatgcgcc
       61 ccgcgcccgg gggccccgcg caccgagcgc cccgcgtgcg ccgccgctgg ctccgcggcc
      121 ccgcgccccg ccgtcccggg gcccccgctc cgcagcacag cgcatggagc ccggcgggga
      181 ccaccggagc cggagcggcg gcggcagggg cggccccggg cccgcagtgg cctcggcacg
      241 gggccgacgg ctgccgccca cggcggcgag tagtggcaca gagcccgagg aggacgacgg
      301 cggacaagct cttcagctgg aagggggtgc cttggggtcc tgggggagta cccccctacc
      361 ctcctccagg gccaggggac cagcatcttc aggcaggaaa tactcagatc attgtgaggc
      421 tcgcgcctca cgacctggaa agagtcgaat ccctggcagg gatcaccggc gctattacca
      481 cgaccactgg cggctggagt acctgatgga cttcatcccc tcccggcacg gcatggtgtg
      541 tatggtgtgt ggcagctccc tggccaccct caagctcagc accatcaaga ggcacatccg
      601 ccagaaacac ccctactccc tccattggag ccccagggag aaggaagtca tcagcaacag
      661 ttgggacgcc cacctggggc tgggggcccg tggtgaggct gagagcctgg gggcccgggg
      721 ggctgaggag gaggaagagg aagaagatga agaggaggag gagggggcca accttcaagc
      781 ttgcccaccc aagggctcag gcaaagcccc agctggtggg ggctgccggc gccagcggcg
      841 aggggttcga gggggcccag tagcacctcg gcgccgacgc ctcgcagcct cccgaagggc
      901 tgggggcagc agggggctgg gggcccggcg cctggaacgg aggctgaagg agtcactgca
      961 gaactggttc cgggctgagt gtctcatgga ctacgaccca cgggggaatc ggctggtgtg
     1021 catggcctgc ggccgggcac tgcccagcct gcacttggac gacatccgtg ctcacgtgct
     1081 ggaggtgcac cccagctccc tagggctcag tggcccccag cgcagtgccc tgctgcaggc
     1141 ctggggtgac cagcctgaag ctctgtccga gctcaccccg ccctcaccag acgatgacct
     1201 cgtcccccag gacctgacca gaaagagccg ggactccgcc cccgctgctg gagccccctc
     1261 ctctcaggat ctcagccccc cagacgtaaa ggaagaggct ggctgggtgc ctgagaggcc
     1321 cgggccggcg gaggaggagg ccgaggaggg cgagggcgag ggcgagaggg cgggcatccc
     1381 gggccggcct cggaggggcc gagaccatcg ccgccactac caggagcgct ggcggctgga
     1441 gtacctcatg gagctggacg gctgccggcg cggcctggtg tgcatggtgt gcgggggcgc
     1501 gctggcctcg ctcaagatga gcaccatcaa gcgacacatc cgccagcgcc acccggggtc
     1561 caacagcctc agcgggccag tcaaagccct catcgcccag gagtggagcg aaaaggccgc
     1621 acacctgctg ggcctggggc ttcccaggcc ggagtcaccc agcggccctg tcgcccccag
     1681 cacagcctca gcctctgagg aggggggagg ggcagaggag gcggagccag aggaggagtg
     1741 gtggggcgac gcgccgctgt cccctggagc tccgtcggag cgacccgccg aggaagagga
     1801 cgaagatgac agccaggagc cccgggggct gccctttccg ccgccgccac tgccgccacc
     1861 gccacctccg ccgccgccgc gaagccggga gcagcgacgc aactaccagc cgcgctggcg
     1921 gggcgagtac ttgatggact acgacggcag ccggcgcggg ctggtgtgca tggtgtgtgg
     1981 gggcgcgctg gccacgctca aggtgagcac catcaagcga cacattctgc aggtgcatcc
     2041 cttctccatg gacttcaccc cggaggagcg ccagaccatt ttggaggctt acgaggaggc
     2101 agcgcttcgt tgttacggcc acgagggctt cgggccaccc gccccggcgc cacgagatag
     2161 cggcgcggat ctcaagcctg gcgcggtgtg tcgcgcgtag tagtcaccct gcgctggcct
     2221 ggcctttggg ctgagagacc ctgatgtcag gttctgggac ccttacctcc ccgctggccg
     2281 ggctaggccg gggccggggg tgggtatgcg atggcgccgc agcagtcctt cggtgacact
     2341 gctgtgcccc ctagtacttg gcctccagtg cgcagtggcc cggggatccc ggcgctcttt
     2401 gtgcgatgct ccgcgcttcc cgaaaagcca aagcgcctcc ccagtgttcg cagcgagcgc
     2461 tctcggctgt ccccgagggc gcagtgctgc cagacccgga tgggggcgca gtcagtcagt
     2521 attagggtag aaggcgggcc gcagggaaac caggaaggac gcgctggccg cgcgacctgg
     2581 ccagtgaccc agttctatgc ggcctcacgc cagcgggcga ggctctcgcc ttccaggctg
     2641 tggggtccaa taggtattct tggcctctta gaggcccagg cggtgggact gaggctcagc
     2701 agggggcggg gcgcggggcg cgggcggaat ggtggggccc agtctgctgc gccagcttcc
     2761 ctggctggcc caggggacag cgcacccatc ctgggccact gccacgcctg caggaccagg
     2821 ggcataaagg gattagcact ttttctttag gccctcctgc tcagagggct tctgttactc
     2881 ggtgaaagca gcgggagtat tcttggtcca gtgccagtac tgttccactc cagggcactg
     2941 gggcggttgg tttctattgc tgccccctct gaacgtgaat tgtcctgggt ggacacacta
     3001 ccggttctca gctcctaggg cacgggcctc ttcctcccgt gctcttacct gaaacagcgc
     3061 caggccccgt ggtgccaaaa gggcccctca atctcccagg caggtccgag agggatatgt
     3121 agatttcatt ctcccgtgga gaacaggtgg tccgaagatc aggccctttt ttgctctttg
     3181 tattttattt tgaaactgta tttaatgctt tttatatgaa gggggtaggg gaactggccc
     3241 aatcaccctt atgtgcaaat gtcttattta ttatgcgtgt atcagagata agctgtgagg
     3301 tggtggagga agaactgaga tgggagtgtg gtgaggggat tgggagtata ctagatagct
     3361 ccatgttccc ctggcctttt gtctccaggt ccagtgtctg ctctttacaa agggaagtca
     3421 ctgcaggcac tgtgccctcc ttttaaaatc gggtgtggtg gtcagggcgt gggacctggg
     3481 ttctggaacc agtgcagcct ttgtggtgag aaaacaagaa aagaaatccc ttctcaccct
     3541 ccagagcaag agctcaaggt tcaagtgcct caggcccagt tccctagatc gagagatgga
     3601 ttttatacca cggattttat agcatttttt tataattcaa aattgtcagt gggaagggat
     3661 cctggagctc acaaactgat ccctttcaaa tctcccagct cagtgagctt tacactatat
     3721 tgcactgctt ctaatctggc aagttaccaa gatttcttta cctattagtc ctgtcaaaag
     3781 tgtgcgttgg gcactgtagg cccacagcac ttgtgactcc tgaggacagc aaagttctgt
     3841 acttcctggg aatgaggacg caggtggctt ccagcagtgc aggcttgccc gtcagaactc
     3901 caggtggggc ccaccttccc tgccgctgag gtttccccag cagaattagg ttgcttatct
     3961 gtgcttgttt tgaggccatc gaccatcagg tattctggaa cggctgctgg ctcagtgaaa
     4021 ttacagtttc agccagcagg gttttggaga cagtattaca atcttaagaa cggaggttat
     4081 gtatggattg tgccaggctg tgcacttacc cttttgcttt ccatcgtgca tgttcttaag
     4141 ctgagaatga ttattctctc ccacctctac ataaattgga gctgctgtcg ttgctagagc
     4201 tcactgcaga agttccagtt agctggggca gaagattttg gcagtttcca ggcatctgag
     4261 acacttgata gagacacatt cttgggccca cctgattact acattctgat aggtccttcc
     4321 catactgtcg aagctcccca ggtagttgtc aagtacctct gcagtgactc tgccatgacc
     4381 acctatggcc tcaaggggct ggtggctctc ctccctccaa ttctgacacg aacaggtgaa
     4441 gttccttcat tgttttgtta atgatatgct tgctattatg gcccatatgt aaatgttact
     4501 ctggatacat atttatatgc catgttactt agtgacacta ttcaaacatt tgtatgtgta
     4561 tttgtgaagt tgtttgcatc agtcataaag ccccccgccc cccatgaggt atgttgaata
     4621 aaatctagaa gtccagccct atgagtcaca gccaacttag tttgggggta gagcaagtca
     4681 gaggagttct ggtgtcagat tagacagcta tgaccagctc agtttcagct ttggttgccc
     4741 atggtttaca ggcagcttcc caggcaggtg agagtgggaa ccagagcctc tcaccccgtc
     4801 acttctgagg ttgtccttta cagggcctct ccgttttaga aaccaagcca tgcagtgtgt
     4861 gctcagtgcc atgggaatcc ttgcaatctt gggagttcct tacaacgttc ctggaatgag
     4921 ggtgggagtg agtgagcctt tgctctcact tcacccaaac tgtacagaga ataaagttgc
     4981 agactgatga gacagtca
//
