LOCUS       NM_001270972            5011 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus zinc finger RNA binding protein (Zfr), mRNA.
ACCESSION   NM_001270972 XM_345169
VERSION     NM_001270972.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5011)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 5011)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   3  (bases 1 to 5011)
  AUTHORS   Elvira,G., Massie,B. and DesGroseillers,L.
  TITLE     The zinc-finger protein ZFR is critical for Staufen 2 isoform
            specific nucleocytoplasmic shuttling in neurons
  JOURNAL   J Neurochem 96 (1), 105-117 (2006)
   PUBMED   16277607
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On Aug 16, 2012 this sequence version replaced XM_345169.5.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643284.2702.1,
                                           SRR26643288.8794.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-279               JAXUCZ010000002.1  62864672-62864950
            280-379             JAXUCZ010000002.1  62865240-62865339
            380-662             JAXUCZ010000002.1  62884740-62885022
            663-807             JAXUCZ010000002.1  62885846-62885990
            808-1026            JAXUCZ010000002.1  62888619-62888837
            1027-1274           JAXUCZ010000002.1  62893345-62893592
            1275-1466           JAXUCZ010000002.1  62896546-62896737
            1467-1758           JAXUCZ010000002.1  62897179-62897470
            1759-1955           JAXUCZ010000002.1  62900020-62900216
            1956-2075           JAXUCZ010000002.1  62900636-62900755
            2076-2221           JAXUCZ010000002.1  62902792-62902937
            2222-2384           JAXUCZ010000002.1  62906226-62906388
            2385-2590           JAXUCZ010000002.1  62907306-62907511
            2591-2741           JAXUCZ010000002.1  62908832-62908982
            2742-2883           JAXUCZ010000002.1  62912877-62913018
            2884-2981           JAXUCZ010000002.1  62917453-62917550
            2982-3077           JAXUCZ010000002.1  62918396-62918491
            3078-3189           JAXUCZ010000002.1  62922603-62922714
            3190-3287           JAXUCZ010000002.1  62922826-62922923
            3288-5011           JAXUCZ010000002.1  62925654-62927377
FEATURES             Location/Qualifiers
     source          1..5011
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q16"
     gene            1..5011
                     /gene="Zfr"
                     /note="zinc finger RNA binding protein"
                     /db_xref="GeneID:365703"
                     /db_xref="RGD:1311890"
     exon            1..279
                     /gene="Zfr"
                     /inference="alignment:Splign:2.1.0"
     CDS             243..3467
                     /gene="Zfr"
                     /codon_start=1
                     /product="zinc finger RNA-binding protein"
                     /protein_id="NP_001257901.1"
                     /db_xref="GeneID:365703"
                     /db_xref="RGD:1311890"
                     /translation="MIPICPVVSFTYVPSRLGEDAKMATGNYFGFTHSGAAAAAAAAQ
                     YSQQPASGVAYSHPTTVASYTVHQAPVAAHTVTAAYAPAAATVAVARPAPVAVAAAAT
                     AAAYGGYPTAHTATDYGYTQRQQEAPPPPPPATTQNYQDSYSYVRSTAPAVAYDSKQY
                     YQQPTATAAAVAAAAQPQPSVAETYYQTAPKAGYSQGATQYTQAQQARQVTAIKPATP
                     SPATTTFSIYPVSSTVQPVAAAATVVPSYTQSATYSTTAVTYSGTSYSGYEAAVYSAA
                     SSYYQQQQQQQKQAAAAAAAAAATAAWTGTTFTKKTPFQNKQLKPKQPPKPPQIHYCD
                     VCKISCAGPQTYKEHLEGQKHKKKEAALKASQNTSSSNNSTRGTQNQLRCELCDVSCT
                     GADAYAAHIRGAKHQKVVKLHTKLGKPIPSTEPNVVSQATSSTAVSASKPTASPSSIG
                     ASNCTLNTSSIATTSVKGLSTTGNSSLNSTSNTKVSAVPTNMAAKKTSTPKINFVGGN
                     KLQSTGNKAEDLKGTDCIKNNPAASAVQIPEVKQDAVSEPVTPASLAALQSDVQPVGH
                     DYVEEVRNDEGKVIRFHCKLCECSFNDPNAKEMHLKGRRHRLQYKKKVNPDLQVEVKP
                     SIRARKIQEEKMRKQMQKEEYWRRREEEERWRMEIRRYEEDMYWRRMEEEQHHWDDRR
                     RMPDGGYPHGPPGPLGLLGVRPGMPPQPQGPAPLRRPDSSDDRYVMTKHATIYPTEEE
                     LQAVQKIVSITERALKLVSDSLSEHEKSKNKEGDDKKEGGKDRALKGVLRVGVLAKGL
                     LLRGDRNVNLVLLCSEKPSKSLLSRIAENLPKQLAVISPEKYDIKCAVSEAAIILNSC
                     VEPKMQVTITLTSPIIREENMREGDVTSGMVKDPPDVLDRQKCLDALAALRHAKWFQA
                     RANGLQSCVIIIRILRDLCQRVPTWSDFPSWAMELLVEKAISSASSPQSPGDALRRVF
                     ECISSGIILKGSPGLLDPCEKDPFDTLATMTDQQREDITSSAQFALRLLAFRQIHKVL
                     GMDPLPQMNQRFNIHNNRKRRRDSDGVDGFEAEGKKDKKDYDNF"
     exon            280..379
                     /gene="Zfr"
                     /inference="alignment:Splign:2.1.0"
     exon            380..662
                     /gene="Zfr"
                     /inference="alignment:Splign:2.1.0"
     exon            663..807
                     /gene="Zfr"
                     /inference="alignment:Splign:2.1.0"
     exon            808..1026
                     /gene="Zfr"
                     /inference="alignment:Splign:2.1.0"
     exon            1027..1274
                     /gene="Zfr"
                     /inference="alignment:Splign:2.1.0"
     exon            1275..1466
                     /gene="Zfr"
                     /inference="alignment:Splign:2.1.0"
     exon            1467..1758
                     /gene="Zfr"
                     /inference="alignment:Splign:2.1.0"
     exon            1759..1955
                     /gene="Zfr"
                     /inference="alignment:Splign:2.1.0"
     exon            1956..2075
                     /gene="Zfr"
                     /inference="alignment:Splign:2.1.0"
     exon            2076..2221
                     /gene="Zfr"
                     /inference="alignment:Splign:2.1.0"
     exon            2222..2384
                     /gene="Zfr"
                     /inference="alignment:Splign:2.1.0"
     exon            2385..2590
                     /gene="Zfr"
                     /inference="alignment:Splign:2.1.0"
     exon            2591..2741
                     /gene="Zfr"
                     /inference="alignment:Splign:2.1.0"
     exon            2742..2883
                     /gene="Zfr"
                     /inference="alignment:Splign:2.1.0"
     exon            2884..2981
                     /gene="Zfr"
                     /inference="alignment:Splign:2.1.0"
     exon            2982..3077
                     /gene="Zfr"
                     /inference="alignment:Splign:2.1.0"
     exon            3078..3189
                     /gene="Zfr"
                     /inference="alignment:Splign:2.1.0"
     exon            3190..3287
                     /gene="Zfr"
                     /inference="alignment:Splign:2.1.0"
     exon            3288..5011
                     /gene="Zfr"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccacgaggga actccacacc cgcaccccac aaatctgccc ctcaggggca ccctgcgcca
       61 gccccggggt gggggtgggg gttggcgtgg ggcgtgagga ctacatctcc caggatgcat
      121 cgcactagcg cgcttgcgct gtgcggccgg cggcggcggt ctgttctccg ctgaggagga
      181 gtggggcaga ggagggaggc agcgggtgag agttcagagt tcagcagcag cagcccgagc
      241 ccatgattcc catatgccct gtagtttctt tcacctatgt gcccagccgg ctgggggaag
      301 atgccaaaat ggcgaccggc aactactttg gattcaccca cagcggggcg gcggcggcgg
      361 cggctgcggc ccagtatagc cagcagccag cttcgggtgt agcctattcc catccaacta
      421 ctgttgctag ctacactgtc catcaggctc cagtagctgc tcacacagtt actgctgctt
      481 acgcaccagc agccgccaca gttgcagttg ccaggcctgc tccagttgct gttgcagctg
      541 ctgcaacagc tgctgcttat ggaggctacc ccactgcaca cacagcaacc gactatggtt
      601 acacccagag gcaacaagaa gcaccaccac caccaccccc agctactaca cagaactacc
      661 aggactcata ctcgtatgta agatccacag cccctgctgt ggcttatgat agtaagcagt
      721 actaccaaca gcccacagca actgctgctg cagtggctgc tgctgcccag cctcagcctt
      781 cggttgctga aacctactat cagacagctc ctaaagcagg ttatagtcaa ggtgcaacac
      841 agtatactca agcccagcaa gctcgacaag tgacagccat aaaaccagcc accccaagtc
      901 cagctaccac tactttctcc atttatcctg tgtcctccac tgtacagcca gtggcagctg
      961 cggctactgt ggtaccgtcc tatactcaga gtgctactta cagtaccaca gcagttactt
     1021 actccggtac atcttattca ggttatgaag cagccgtata ttcagctgcg tcttcctact
     1081 accaacagca gcagcagcaa cagaagcaag cagcagcagc agctgctgct gcagcagcaa
     1141 cagctgcctg gacagggacc acctttacta aaaaaacacc attccaaaat aaacaactga
     1201 aaccaaaaca gcctcccaaa ccaccccaga ttcattattg tgatgtttgt aagatcagct
     1261 gtgctggacc acagacttat aaagagcact tagaaggaca gaaacataaa aaaaaggaag
     1321 ccgcattgaa agcctctcaa aataccagca gcagcaacaa ctcaactcgt gggacacaaa
     1381 atcagctacg ttgcgagctc tgtgatgtgt cttgtacagg agcagatgca tatgctgccc
     1441 acattcgtgg tgctaagcat cagaaagtgg ttaaattaca cacaaaactt ggtaaaccta
     1501 ttccttcaac ggaaccaaat gttgttagcc aagctacttc ttcaacagct gtatctgctt
     1561 caaaaccaac tgcctctcct tcaagtattg gagcaagcaa ttgtactctg aacacgtcat
     1621 caattgcaac tacttcagtg aaaggtcttt caactacagg aaactcgtct cttaatagta
     1681 catccaacac taaagtgtca gcggtaccta ccaatatggc tgccaagaaa acatctacac
     1741 ccaaaataaa ctttgttggt ggaaataagc tacagtcaac aggaaataaa gctgaagact
     1801 taaaaggaac tgactgcatt aaaaataatc ctgctgcctc tgctgtacag attccagaag
     1861 taaagcaaga tgcagtgtca gaaccagtca cacctgcatc ccttgctgct ttgcagagtg
     1921 atgtgcaacc agtgggacat gattatgttg aagaggtacg aaatgatgaa ggaaaagtca
     1981 ttcgcttcca ttgtaaatta tgtgaatgca gctttaatga ccccaatgct aaagagatgc
     2041 acctaaaagg acgaagacat agacttcagt ataaaaaaaa agtaaatcca gatttgcaag
     2101 tggaagtgaa gcccagtatt cgtgcaagaa agattcaaga agagaaaatg agaaagcaaa
     2161 tgcagaagga agagtactgg cggagacgag aagaagagga gcgctggagg atggaaataa
     2221 gacgttatga agaagacatg tactggagaa gaatggagga agaacagcat cattgggatg
     2281 atcgccgacg aatgcctgat ggaggctatc ctcatgggcc tccaggtcca ttaggtcttt
     2341 tgggagtccg accaggcatg cctccccagc cacagggccc tgcaccctta cgtcgccctg
     2401 actcatctga tgatcgttat gtaatgacaa agcatgcaac tatttatcca acggaagaag
     2461 agttacaagc agttcagaaa attgtttcta tcactgaacg tgctttaaag cttgtttcag
     2521 acagtttgtc tgaacatgag aagagcaaga ataaagaggg agatgataag aaagagggag
     2581 gtaaagacag agctctgaaa ggggtgttgc gagtaggagt attggcaaaa ggattgcttc
     2641 tccgaggaga cagaaatgtc aaccttgttt tgctgtgttc agaaaaacct tccaagtcat
     2701 tattaagccg tattgcagaa aacctaccca aacagcttgc tgttataagt cctgagaagt
     2761 atgacataaa atgtgcggtg tctgaggcag cgatcatttt gaactcgtgt gtggaaccca
     2821 aaatgcaagt cactatcacc ctgacatctc caattattcg agaagagaac atgagggaag
     2881 gagatgtaac ctcgggtatg gtgaaagacc caccggacgt cttggacagg caaaaatgcc
     2941 ttgacgctct ggctgctcta cgccacgcta agtggttcca ggctagagct aatggcctac
     3001 agtcctgtgt gattatcata cgtattctcc gagacctttg tcagcgagtt ccaacatggt
     3061 ctgattttcc tagctgggct atggagttac tggtagagaa agcaattagc agtgcttcta
     3121 gtcctcaaag ccctggagat gccctgagaa gagtatttga gtgcatttct tcagggatta
     3181 ttctcaaagg cagccctgga cttctggatc cttgtgaaaa ggatcccttt gatactttgg
     3241 caacaatgac tgaccaacag cgtgaagaca ttacatccag tgcacagttt gcattgagac
     3301 tccttgcatt ccgtcagata cacaaagttc tgggaatgga tccattacca caaatgaatc
     3361 aacgctttaa tatccacaac aacaggaaac gaagaaggga tagtgatgga gtggatggat
     3421 ttgaagctga ggggaaaaaa gacaaaaagg attatgataa cttttaaaaa gtttgtgtaa
     3481 atcttcagtg ttacaatagg tgccagttat tggctgtttt ccattcataa taatgtctac
     3541 tttaaaagtt tatcaagaat ataaagagtt tcatggaaga accaagtttt tctatgatat
     3601 taaaaactta ttgtacagtg tcaggtatta tatggatgga aagacgttgg aaaataaatt
     3661 tgactagggg aagtatagtg gttcccctcc cttttttccc ccattatttt attgactggt
     3721 tgcccttgcc ccctgtattt ttgtgtcttt tattaactag tgcattgtgt tattaaatct
     3781 ttactgtatt taatgcagga tttgtgcttc agttgctccg tgtattttga tacttttatt
     3841 tagaagtttt gtttgctttg acaccagttg taagttactg tgttccaggt gatatccttt
     3901 accccttact actttacagc agtgcgtctt tttgtaacgt gaaactgcag actttcttcc
     3961 tttgttactc tgtatgtgaa ggatttcaat acaaaaagct accctgccat ctaagtgctc
     4021 agaactaggt gtttctgcag atcttgtggc atttgtctat ctagtgtgat atataaaggt
     4081 gtaattaaga caaattcgtt aatctaatca agtttgctgt tagttgtgca ttagcagtat
     4141 aaaagctaat atatattata tggtcttgca acagttttaa agcctctgca taattgataa
     4201 taaaatgcat gacatttttg tttttaatag acatttaaaa taattttagg tttaacacgt
     4261 agatctttgt acagttgact ttttgacata gcaaggccaa aaataacttt ctgaatactt
     4321 tttcttctgt acaagtggaa agggaatttc tcacatataa gtgggctatt gttttcagaa
     4381 gaacttcatc attgtgcaac taacaataac tagccctaat tatgtgacag ttccttattg
     4441 atatgtgtgc aattactcta gcagcttcta cagtataaca cagttgaatg atccccatac
     4501 atcctatcac tcagatcatt tataggtcta ttaactgtga gattgataaa gtattactga
     4561 tttaagaaaa ataagagtat ctaaggaaaa aaaaaaaaac agaaaattat ttggtgtggc
     4621 catcctccat gcttacgtct tatacagagt gctaacccct agcagtggtg taatgagtta
     4681 cagcctactg cgatgtatgt gtgctctggt gcacagatgt cgttttgttg tcacagcact
     4741 acagtgagat acagaaataa agacttaaat tcatagaatg acttacttgt attatgtggt
     4801 aggcttgatg gtgataactt ttgcttgata ctccttacgc ttcagtcaaa ctgtattcat
     4861 atatactgtg tatgtatgtg ttactcctga caagtgtgtg ttggtggatc acataattct
     4921 aaaagttttt taggtttcat caccatattg gttcattttt ctagggtgga gcccttaccc
     4981 aaaccaaagt atacaagact ggcatttttg c
//
