LOCUS       NM_001127635            3959 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus zinc finger protein 9 (Zfp9), mRNA.
ACCESSION   NM_001127635
VERSION     NM_001127635.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3959)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 3959)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Jan 1, 2009 this sequence version replaced NM_001127635.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC166539.1, SRR26643295.19590.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-44                JAXUCZ010000004.1  153328995-153329038 c
            45-147              JAXUCZ010000004.1  153327124-153327226 c
            148-274             JAXUCZ010000004.1  153316185-153316311 c
            275-370             JAXUCZ010000004.1  153315816-153315911 c
            371-434             JAXUCZ010000004.1  153315062-153315125 c
            435-3959            JAXUCZ010000004.1  153311020-153314544 c
FEATURES             Location/Qualifiers
     source          1..3959
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..3959
                     /gene="Zfp9"
                     /note="zinc finger protein 9"
                     /db_xref="GeneID:100158232"
                     /db_xref="RGD:2293498"
     exon            1..44
                     /gene="Zfp9"
                     /inference="alignment:Splign:2.1.0"
     exon            45..147
                     /gene="Zfp9"
                     /inference="alignment:Splign:2.1.0"
     CDS             133..1500
                     /gene="Zfp9"
                     /codon_start=1
                     /product="zinc finger protein 25"
                     /protein_id="NP_001121107.1"
                     /db_xref="GeneID:100158232"
                     /db_xref="RGD:2293498"
                     /translation="MTKFKGPVTLRDVTVEFTKAEWKLLTPAQKSLYKNVMLETYSHL
                     VSVGYRVVKPSMISKLKKGKEPWPLGAEFLRRSCGDKRRTVHDPKARHQEQQAGTARK
                     GELAKRQKTPTRHESYDCSKCGKSFCQKSSLLAHQETHTKKSYKCDKCGQAFYKNEDL
                     SIHQKVHTRDKTYPCKECNKIFYHLSSLTRHLRIHAGEKPYECSQCEKSFYQKPHLTE
                     HQKTHTGEKPFECKECGKFFYVKAYLLVHQKTHTGEKPFECKECGKFFSQKSHLTVHQ
                     RTHTGEKPYKCKECGKLFSRNSHLITHQRTHTGEKPYKCKECGNRFYQKSALTVHQRT
                     HTGEKPFECSKCGKHFYYKSDLTKHERKHTGEKPYECAECGKSFSVNSVLRLHERTHT
                     GEKPYACEICGKSFSQKSHFVVHQRKHTGEKPYKCQECGKSFIKKSQLTEHQKTHSKK
                     GKTNK"
     exon            148..274
                     /gene="Zfp9"
                     /inference="alignment:Splign:2.1.0"
     exon            275..370
                     /gene="Zfp9"
                     /inference="alignment:Splign:2.1.0"
     exon            371..434
                     /gene="Zfp9"
                     /inference="alignment:Splign:2.1.0"
     exon            435..3959
                     /gene="Zfp9"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctgcagcaga ggccacgggc ctccctaaaa ccgctgtcac cgaggggacc tggagctgtg
       61 gcatatgatt tcctaggact tcactctccc gactttaaag ggtggaaccc ggctctaaaa
      121 gcacagcaga aaatgaccaa gttcaaggga cccgtgacac taagggatgt gactgtggaa
      181 ttcaccaagg cagaatggaa gctattgacc cctgcccaga agtcccttta caagaatgta
      241 atgctggaga cctacagtca cctggtctct gtgggctatc gtgtggtcaa gccaagtatg
      301 atctccaagt tgaagaaagg aaaagagcca tggccactag gagcagaatt tttacgtagg
      361 agctgtggtg ataagcggcg gacggttcat gaccccaaag ccagacatca ggagcaacag
      421 gctgggactg caaggaaagg agaactcgca aagcgtcaga aaactcccac ccggcatgaa
      481 agctatgact gtagcaaatg tggaaagtcc ttctgccaga agtcttccct cctggcgcac
      541 caggaaacac ataccaagaa gtcctataaa tgtgacaaat gtggacaagc tttctataaa
      601 aacgaagacc tttcaatcca tcagaaagtt cataccagag ataaaaccta cccgtgtaaa
      661 gaatgcaaca aaatcttcta ccacctgtcg tctctcacta gacatctgag aatccatgct
      721 ggggagaaac cctacgaatg tagccagtgt gagaaatcct tctaccagaa gccacacctc
      781 acagaacacc agaaaacaca cacaggggag aaaccttttg agtgtaagga atgtgggaag
      841 ttcttctatg tgaaggcata cctcctggta catcaaaaga cacacacagg ggagaaacct
      901 tttgagtgta aggaatgtgg gaagttcttt tctcaaaaat cacacctcac cgtccatcag
      961 agaacacaca caggggagaa gccctataaa tgtaaggagt gtgggaaact cttctctagg
     1021 aattcacacc tcataaccca tcagagaacc cacacagggg agaaacccta taaatgtaag
     1081 gagtgtggaa accgcttcta ccagaagtca gccctcactg tgcaccagcg aactcacacc
     1141 ggggagaagc cttttgaatg tagcaagtgt gggaaacact tttactataa atcagatctc
     1201 accaaacacg agagaaagca tacaggggag aagccgtatg aatgtgcaga gtgtggcaaa
     1261 tctttctctg tgaactcagt ccttagatta cacgaaagga ctcacacggg agagaagcca
     1321 tatgcgtgtg agatctgtgg gaagtccttc tctcagaagt cacattttgt cgtccatcag
     1381 aggaagcaca caggggagaa gccctacaag tgccaggagt gtgggaaaag ctttatcaaa
     1441 aagtcacaac tcacggaaca tcagaagaca cactccaaga agggaaagac aaacaaatag
     1501 tgtgagttca gaacccctgc aggaattcac cctttggctg taatccacac agaaggagaa
     1561 ccttctaagt atggaggggg aaaaatggca gccatgtttt gttttgtttt gttttgtttt
     1621 ttattcctca cagaattatc agcaaatgtg cagaaagaaa ttcttcaatg acattaggta
     1681 gatctttacc atagggtcaa ctttcagaaa taacaggtgg cagaaactgt gcaaactaca
     1741 aaatgtgaaa gaaactttgt tttttagaag tcacactgat gccatataga aatagcatgg
     1801 ggcagaaatc cagtaagtaa gtgaatttcc agaagtttct gtcatagcat ctagcactct
     1861 acatgcaaag tccacagtga ggaattccaa tgagtatcag gcactcgaag tctccccaca
     1921 tggctggtta cactcatctt aaaaggacgg aggggaatac gtgcatagat tgcaatggat
     1981 atgagaacct tatcgagaac atgcccatca tggaatgtta gttccattaa tactttaatt
     2041 ggacctacat aagtatctta aatatttgaa acaccttcca caaaaattaa aatcaattta
     2101 tcctgaaggc agtggttaca ctccaagtcc tgctgccagt ttcaaggttc tattttcttc
     2161 cttaaagaaa catacagtac aaacagaagc caactaatat tgcatatatc aaaggtattt
     2221 aaagagcaaa aaacgtgcca aagagatggc ttagcaatta agagcactga cgactctacc
     2281 agaggtcctg agttcaattc ccagtaacca catggtggct cacagccatc tgtaatggga
     2341 tctggtgtgt ctgaagagaa tgacagtgtc ctcacataca taaaataaat aaataatctt
     2401 tttaaaagga gcaaaagcaa ccaggaaaca tcattaaaca aagaagtctt ttgatatgta
     2461 ggatgtagag gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtttatctct ttaaaaaaca
     2521 tttctaaatg tgtgactttc tccttgaacc catagtgatt gtttctgagc tcagtagctg
     2581 tggaaggaca catgtcacat tgtagcaaca gtgattccca caggtgacat tgttaccgta
     2641 acttatattt gtgtagactt tatatttgtg cgcctttttg tcaatctctg ggcacttaca
     2701 aatgggttca gacattgtta ttaattgggc ccttcaaaag aaactttgta actttttctg
     2761 ctatattgtg atgagttgaa cttggacatg catttgagca gtccgagctg tttctaaggc
     2821 agcagtattt acttctctta ctgtagatat gtagcagtgg catctgtgtt tgtattgtgt
     2881 atgaaaaata cctcattgct tttccttcct attctgggta gcagaggcag caaggccagt
     2941 agctgaaagt gagattctag gctcctacta ccttccttga cccggacccc agcatgaaca
     3001 tggcctgtaa ctttactgtg cctcaccttc ctcctctgta agggtaatga cagcaacatc
     3061 ctagaattgc cttgaggttg aaatatgttg atattttgaa gcactcagaa aagtgtctgt
     3121 aaaacatagt aactcaacgt tagatagcat tctcattaat ttgtatttcc caaatcacac
     3181 agtgaaaagg ttggcaagcc ggaatttatc tctcacctta ttcctgttag tgccttgatt
     3241 tgatttggct gtgtatctcc ccatggtagc tcaggagcag atcctgagta gacaaggcca
     3301 ggggttggtg aaccacagcc cgttggccag attcacagcc catttttgta gcctataagc
     3361 tgagattagt tttatattcc tcaatgattg caaaaattaa atattttgtg acacatgaag
     3421 gttgtacaaa acgaaagttc cgtgtctgta actaaagcac tttgagaaca ctaatacaaa
     3481 cccgtttgat tacattctgc cggtgatacc ttcgcacggt gctagtgagg cagaccacat
     3541 ggctaggaga gcctgagaca ttgctgactc agcactttac cgcataggtc tctgttactc
     3601 agggctgcac acgctgcagc tggtcctgag cccactcttc aaaatgttct gattacaaat
     3661 gtgatgccac agctttgcgc agtggcagta tcgtagccaa tgaggtttat ccgaggcgcg
     3721 attattgcta attgaaaaca aatgtgatgc cacagtctat gggtgggtga tgtctgtgca
     3781 gtatatttat tttgtggatt gtatttatat gtgaaaatgc ctaggcttcg aagtattttt
     3841 ctcctaaaaa aaatgtggct tttttttttt acttactgaa ttgttatgtt aaaacatatt
     3901 tcttgatgga atgtaacaaa tatatgaaat aaacattgtc tcaacgaaat ggaattaaa
//
