LOCUS       NM_001346428            3445 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus zinc finger protein 874b (Zfp874b), mRNA.
ACCESSION   NM_001346428
VERSION     NM_001346428.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3445)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 3445)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Apr 4, 2023 this sequence version replaced NM_001346428.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360172.1884812.1,
                                           SRR26360186.2615891.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-30                JAXUCZ010000001.1  36842676-36842705   c
            31-157              JAXUCZ010000001.1  36840335-36840461   c
            158-253             JAXUCZ010000001.1  36839790-36839885   c
            254-3445            JAXUCZ010000001.1  36830702-36833893   c
FEATURES             Location/Qualifiers
     source          1..3445
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1p11"
     gene            1..3445
                     /gene="Zfp874b"
                     /gene_synonym="AABR07001099.1; RGD1566325; Zfp875"
                     /note="zinc finger protein 874b"
                     /db_xref="GeneID:498682"
                     /db_xref="RGD:1566325"
     exon            1..30
                     /gene="Zfp874b"
                     /gene_synonym="AABR07001099.1; RGD1566325; Zfp875"
                     /inference="alignment:Splign:2.1.0"
     CDS             25..1371
                     /gene="Zfp874b"
                     /gene_synonym="AABR07001099.1; RGD1566325; Zfp875"
                     /note="zinc finger protein 875"
                     /codon_start=1
                     /product="zinc finger protein 874b"
                     /protein_id="NP_001333357.1"
                     /db_xref="GeneID:498682"
                     /db_xref="RGD:1566325"
                     /translation="MEEMLSFRDVAVDFSPEEREYLGPSQWSLYRDVMLENYSNLVFL
                     GLAVAKPYLVTFLEQTQGSSGVKRQEAATIPPGTTGNEFNTHSKTINHNSLSIQCQRI
                     HRGEKCYYFEECGKALSSQSTLSIRQRRYIGDKPYKCKECHKTLSSRSSLLIHQKYHT
                     DEKTYKCEECGKQFLRSSHLQHHQKIHTGEKPYKCEDCHKAFLHHSYLRKHQAVHTGE
                     KPYKCEECGNSFYYPAMLKQHQRIHSGEKPDKCEECGKVFSSAFFLNQHKGIDSREKR
                     YQCLECGKSFCYRSYLREHYRRHSGEYPYKCEECGKGFSRSSKLQEHQTIHTGVKPYS
                     CEECGKCFSSLTSLKRHQVIHSEDTPHECGKCGKKFSSSSRLQEHQKIHTEEKPYKCE
                     DCHKAFLYHSFLRRHKAVHTREKPYKCEECGKCYTSFTSLKRHQTLHSVDSPHEWV"
     exon            31..157
                     /gene="Zfp874b"
                     /gene_synonym="AABR07001099.1; RGD1566325; Zfp875"
                     /inference="alignment:Splign:2.1.0"
     exon            158..253
                     /gene="Zfp874b"
                     /gene_synonym="AABR07001099.1; RGD1566325; Zfp875"
                     /inference="alignment:Splign:2.1.0"
     exon            254..3445
                     /gene="Zfp874b"
                     /gene_synonym="AABR07001099.1; RGD1566325; Zfp875"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtgctctccc gttggatctc tgacatggag gaaatgctgt cattcaggga tgtggccgtt
       61 gatttctctc cagaagagag ggagtacctg gggccttctc agtggagtct gtatagggat
      121 gtgatgctag aaaattacag caaccttgtg ttcttgggtc ttgctgttgc taagccatac
      181 ttggtaacat ttctggagca aacccaaggg tcttcgggtg tgaaaagaca agaagcagcc
      241 accatccctc caggcacaac aggcaatgaa tttaatactc acagcaagac catcaaccac
      301 aactctctaa gtattcaatg ccagagaatt catagaggag agaaatgcta ctactttgaa
      361 gaatgtggta aggcccttag ttctcagtca acactttcta tacggcagag acgttatatt
      421 ggagacaaac cctacaagtg taaagaatgt cataaaacgc ttagtagtcg ctcatcactt
      481 ttaatacacc agaaatatca tactgacgaa aaaacctaca agtgcgaaga atgtggcaaa
      541 cagtttttgc gttcctcaca tcttcagcat catcaaaaaa ttcatactgg agagaagcca
      601 tacaaatgtg aagactgtca caaagccttt cttcatcact catatcttag gaaacaccag
      661 gcagttcata ctggagagaa accctacaag tgcgaagaat gtggaaattc attttactat
      721 cctgcaatgc tgaagcaaca tcaaagaatt cattctggag agaaacctga caagtgtgag
      781 gaatgtggaa aagtcttttc ctctgctttc ttccttaacc agcataaagg aattgattcc
      841 agagagaaaa ggtaccagtg tctagaatgt ggcaaatcct tttgctatcg ttcctatctt
      901 agggaacatt acagaaggca ttctggagag tatccctata agtgtgaaga atgtggcaaa
      961 gggttttccc gttcttcaaa gcttcaggag catcaaacaa ttcatactgg agttaaacca
     1021 tacagttgtg aagagtgtgg caagtgtttt tcctctctta catcccttaa aagacatcaa
     1081 gtcatccatt ctgaagacac tccccatgag tgtggaaaat gtggcaaaaa gttttctagc
     1141 tcttcccgcc ttcaggaaca tcagaaaatt catactgaag agaaaccata caaatgtgaa
     1201 gactgtcaca aagcctttct ttatcattca tttcttagga gacacaaagc agttcatact
     1261 agagagaaac cctacaagtg tgaagagtgt gggaaatgtt atacatcttt tacatccctg
     1321 aaaagacatc aaacactcca ttctgtagac agtcctcatg agtgggtata atgtggcaaa
     1381 aggttttcta gctcttccca ccttcaggaa cacctagaaa ttcatattgg agagaaaaca
     1441 tacaaatgtg aagactgtca aaaaaccttt gccattcatt tcttaggaga aactaggcag
     1501 ttcatattag tagaaaccct acaagtgtga agactgtagg aaatgttttt cctcttcctt
     1561 aacccttaaa agacatgaaa taattcattg tgaagacagt tcctacaagt gtgggtaatg
     1621 tagcaatctt ctctatgctg tctaccctta caaaacacaa gtttgttcat tctctagaga
     1681 aactgtcaaa gtaggaatga tgtgggaaag ccttgtcttc taattcttcc ctaatttaac
     1741 acaagtccta ctagagtgaa accttactag tgggaagaat gtaggaaaat gttttactct
     1801 acattacaac tgaaaaaaca taaatgaata caatgtcaag agaaaacatg aaaatgtaat
     1861 ggatgtggaa aagccttttc catttactgt tatcagcaga aagagaaatg ccacaaggtg
     1921 aagagtgcag caaaatgttt cactctagaa ttaaatttca aaatatttat actgtagaaa
     1981 aaccaagtgt gaagagtgtc tccttgtgtt atgttaccct tgtgtaccca ctaagttaat
     2041 tgttttgaaa tgttaaatat ctcttatcca tgagcacaaa tgctaagaat atgatcagat
     2101 gacagtaaaa atgcatcttt gatgtaatct ccccactact ctctaaacca gcatgtttgg
     2161 aatatacctt gattgataaa tttctttctt ctgtgctatc agtgtaccat gaaactgtta
     2221 ccatgctgtt acatggttgt ttgggtgacc tgaatctgag tactgggcca tggtatactt
     2281 actgttgttt tccccgcgga gacaccaaag cactgtaatg atgtctctta tgggctttgt
     2341 gggaagctcc atgaactcac atttctcacc agatatgact aggatgaaat gacctgcttt
     2401 gggtcccagc cagcctgagg tgagtgagaa ctagtgtttg tctccccagg aagccccaaa
     2461 acaatagata gttgtgttcg gttccagaat aaagaatctc tgatctgctt taagttcaga
     2521 aagtgttaat tgtgtgcata catgtgcctg tacatatgtg tatgtgtgtg tcagtaccaa
     2581 caacattgtc ataacaaact ctcatactgt aataaggaca aaagccaaat gcactcactc
     2641 agcagagaca atagatatgc ttactgtttg ggacctaggt aaaatgttaa agcctagatt
     2701 ctgaatgttg agcctagatg gaacattaag gccgaggtaa aatgttaagg attatgtgat
     2761 atataatagc tagcctgcca ttataaggaa actttatcat aagtttctgc tgttactagg
     2821 aaactttcta acatgtgact gattaaattt tatgttacag tctctgcctt tggaaactaa
     2881 tggctataga agtcagtgga actgttttgt gtggttaccc acaataagct tggactaaaa
     2941 ccaagccttc aacagcactt cctgtacctg tgtctaggct tctgtggtat aagctgctcc
     3001 tgggatgggc cccaatgtaa gagttataaa aaaaaaacta tttaagtttt ctattttgaa
     3061 ttatacttga gtaatgttta agttcccaag acctccctgg gaactgacat cttacttggc
     3121 agaggaaaac atgtaagtgg gtaactgaca tcctgattgg aaagttaaga catgaatgtt
     3181 acaccaggta agcccccgac acactggaat atctcaagta atgggggcag gataagtgca
     3241 caacaaagac atgttccaaa ggaaatgtcc ccatccctaa atcctgaggg tgaaataact
     3301 tggcatagat ttttgtggat ttggggctta aaaatcctgt aagatctaaa ctcaatgtca
     3361 tggttcattt cccaaatcta gactgtagct gtggccaatg aatcctgggg tgtatgctca
     3421 ataaactgtc cctgtctgac tgtta
//
