LOCUS       NM_001107500            5938 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus zinc finger protein 84 (Zfp84), mRNA.
ACCESSION   NM_001107500 XM_001078745 XM_218463
VERSION     NM_001107500.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5938)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            FQ196558.1 and JAXUCZ010000001.1.
            
            On Sep 23, 2014 this sequence version replaced NM_001107500.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.2414776.1,
                                           SRR26643286.1264.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-758               FQ196558.1         1-758
            759-5938            JAXUCZ010000001.1  94124634-94129813
FEATURES             Location/Qualifiers
     source          1..5938
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q21"
     gene            1..5938
                     /gene="Zfp84"
                     /gene_synonym="AABR07002868.1; Zfp790; Znf30"
                     /note="zinc finger protein 84"
                     /db_xref="GeneID:308482"
                     /db_xref="RGD:1309815"
     exon            1..115
                     /gene="Zfp84"
                     /gene_synonym="AABR07002868.1; Zfp790; Znf30"
                     /inference="alignment:Splign:2.1.0"
     exon            116..188
                     /gene="Zfp84"
                     /gene_synonym="AABR07002868.1; Zfp790; Znf30"
                     /inference="alignment:Splign:2.1.0"
     CDS             156..1835
                     /gene="Zfp84"
                     /gene_synonym="AABR07002868.1; Zfp790; Znf30"
                     /note="ZFP30 zinc finger protein; zinc finger protein 30;
                     zinc finger protein 790"
                     /codon_start=1
                     /product="zinc finger protein 570"
                     /protein_id="NP_001100970.1"
                     /db_xref="GeneID:308482"
                     /db_xref="RGD:1309815"
                     /translation="MAVVDVNTVFKELVVFRDVAIEFGKEEWECLGPEQRSLYRDVML
                     ENYSHFVSLGLAISKPSVISLLEQGKEPWRVEQAGWYPDLLSVNEAKNLSLKHGIFGK
                     ESLKWKVTERVGSSCLEESRFGDDWKCRGLLETKLESPDEYLQGVAAPSEKASTEFIQ
                     PAPIALSEMTHSERKQSEQEAGETITQQVRIPTSDKLNEMYENAFIYYTDEMKRQQAF
                     AGDRCDELKGCSRGFAYDFQLAPYQINKKPYQCEICGKIFEKHAYLVQHNRFHTGEKP
                     CECKECGKAFTNCSLLVQHQRVHTDEKPYECKHCGKAFLYFSTFFQHQRTHTNEKPYE
                     CHKCQKAFNKSANLTRHQRIHSGEKPYECNLCGKTFTWASNLNDHQKIHTGEKPYECN
                     YCEKAFLCHSAFMKHYRTHTNEKPYECQECMKAFRQKAHLIQHQRVHTGEKPYECKEC
                     GKAFACPSYFNRHQRIHTGERPYECKECGKAFIDCKTLILHQRIHTGEKPFQCQQCSK
                     AFRQRSHLTQHQRIHTGEKPYECKECGQAFTRLLQVKKHQRVHTVGEILCI"
     exon            189..315
                     /gene="Zfp84"
                     /gene_synonym="AABR07002868.1; Zfp790; Znf30"
                     /inference="alignment:Splign:2.1.0"
     exon            316..402
                     /gene="Zfp84"
                     /gene_synonym="AABR07002868.1; Zfp790; Znf30"
                     /inference="alignment:Splign:2.1.0"
     exon            403..5938
                     /gene="Zfp84"
                     /gene_synonym="AABR07002868.1; Zfp790; Znf30"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aaaggttgtt ccggatcatc tctgtgccct acccgaccta acccggtact gtcctggttg
       61 gtattcgcct gtcttccgag ttcgaagccg tgaagactca gtttatactt ctgagttctg
      121 cagttttccc aaagtgcctg gaagaccgga gaaacatggc cgttgtggat gtcaacaccg
      181 tgttcaagga gttagtggtg ttcagggatg tggctattga gttcggtaag gaggagtggg
      241 agtgcctggg ccctgagcag aggtcgctat acagagacgt gatgctggag aactacagcc
      301 actttgtgtc cctgggactt gccatttcta agccatcagt aatttcacta ctggagcaag
      361 gcaaagaacc atggagagtg gagcaagccg ggtggtatcc agatttgctg tctgtaaatg
      421 aggctaagaa tttgtctcta aagcatggca tctttgggaa ggaatcatta aaatggaaag
      481 taacagaaag agttgggagt tcctgcctcg aggaatctcg ttttggagat gattggaaat
      541 gcagggggct ccttgaaaca aaactggaat ctccagatga atatttacag ggagtggcag
      601 ccccgtcgga aaaggcgtca accgaattca ttcagcctgc acccatcgct ctgagtgaaa
      661 tgactcactc tgaaaggaag cagtctgagc aggaagcagg tgaaaccatt actcagcaag
      721 tacgaattcc caccagcgac aaacttaatg aaatgtacga gaacgccttt atctattaca
      781 cagatgagat gaagcgtcag caggcttttg ctggggacag atgtgatgaa ctaaagggat
      841 gtagcagagg atttgcctat gacttccagc tcgccccgta tcagatcaat aagaagccct
      901 accagtgtga aatctgtggt aagatctttg agaagcatgc ttaccttgtt cagcacaacc
      961 gctttcacac gggggagaag ccgtgcgaat gtaaggagtg tgggaaagcc ttcaccaact
     1021 gctccctgct ggtccagcac cagagagtgc acacagacga gaagccctac gagtgcaagc
     1081 attgtgggaa ggccttcctc tacttctcca cgttttttca gcatcagaga acccacacca
     1141 acgagaagcc gtatgagtgc cacaaatgtc agaaggcctt taacaagagc gccaacctca
     1201 ccagacatca aaggatccac agcggcgaga aaccctacga gtgtaacttg tgcggaaaga
     1261 ctttcacttg ggcttccaac ctgaacgacc accaaaagat tcacaccggt gaaaagcctt
     1321 atgagtgtaa ctactgcgaa aaggcctttc tctgtcactc ggccttcatg aagcactaca
     1381 gaactcacac gaacgagaag ccctatgagt gccaggagtg tatgaaggcc ttcaggcaga
     1441 aagcccatct catccaacac cagagggttc acactggcga gaaaccgtac gaatgtaagg
     1501 agtgtgggaa ggccttcgcg tgtccgtcgt actttaacag acatcagaga attcacaccg
     1561 gagagaggcc ttatgaatgt aaagagtgtg ggaaggcttt tattgattgt aaaaccctta
     1621 ttctgcacca gaggatccac actggcgaga agcccttcca gtgccagcag tgcagcaagg
     1681 cctttaggca gaggtcccac ctcacgcagc atcagagaat ccacaccggc gagaagccct
     1741 acgagtgcaa ggagtgcgga caggccttca ctcggctctt acaggtgaag aagcaccaga
     1801 gagtgcacac agtgggggag atcctgtgta tttgaacact gccctctatt tattgaaaag
     1861 ccccgttgag catccgcacc aacatacaga agataaacat tgataaatca gaaatatggg
     1921 aaacgcctgt gtgtgtcccc cagctaagca gactgctggg gagagccttc tggaagtgag
     1981 gcatgtggaa cgcctctcat accgtgctca tacactgtgt aacttatact gtgttcagag
     2041 tgggaaaccc tcatcactct ccgccgttca tcatggaaca agagtctgtc agaagcatct
     2101 gatgactgga ctcttttttt tctttataac ctactttata ttgagtatta actcacatag
     2161 gaaaaataaa aattaaatta tgaataggaa tcctaattcc tcaccagtca gtgggttcta
     2221 tttaaggata gctataaaaa gtaccacaca gagaacaatg gtatgcgtgt tgttagcgta
     2281 gaagcctcac gtgcatcgtt tgctgactgt agtttactaa gctgacctca gccctgcctc
     2341 cgattgctgc cttgttacct ggtagttcgg ttattttgag gatgggatga gtcagtaagc
     2401 ggggcctttc gtgtagcctc cacacagaag ccacaatcag gaagggtttg gaatcatcct
     2461 ctttatgacg ctctctgtta ctatttttgg aacattcata tccattttat taatgacatc
     2521 tgtcagtgct tgtcccatgc caaagctttc aaaaggagtc ccggagtgac agtgattgaa
     2581 acagaacctg agcagatttc cactttgaca tcatttgaat cagaaagtcg accctaacca
     2641 ggccacatgg actcactgct caaagcgtcc accacagcag aggcaccgtg acttcctact
     2701 catactcaga acagtcggat ctgcacagga caggaactgg aacaaacctg taatctacca
     2761 ccatcaccat gtgactgttg ggtcacatgc aaacgcagtc tgaaaataca gctttgcttc
     2821 agtgtggaag aatggcggct gtacgcacta aaaccaacga ggttcatttg agtagatgct
     2881 atcaaatatc ccccaccccc aaacaagcaa taaatcttag aattgacagc agaaatacat
     2941 gttatgtaca ataagtgtta atgaatttaa agaagttcct aaaaaccatc aataaagtgg
     3001 attttaaagc cttttccaaa ccatagacta gatttcccag gccttaagga cacatttgaa
     3061 agacacaaac acagctgtca gtgttcatgg gaagtaggac attcttagaa atatgtttgt
     3121 tcagttggct ttggtgggtt ttcaagacag ggtctcttaa acgtgtggca gtcctcctgc
     3181 ttcaacccat tgagtgctgg gattagaagt gggtgccacc acactggctt gaactcagag
     3241 atttgagcct gctcggctgg ttctgtcctg agctttaacc ccagccctct ttattctgag
     3301 acagggtctt gctgaattgc ctaggcaggc cctgaactca tgatcccctt acattagcct
     3361 ttcaaatagc tgggactatc gagctccgtc gccaggtaca gctagaaagt tttactgcta
     3421 taaaatagtg tattcattat tatatcggat aaatttgaag tgctcggcgt aaattctgtg
     3481 ggaatgtata tgaatttttt ttgattggct cgtaaaccta taggaaattc gaataaagcc
     3541 tggctcctct tcaagaaaat agaaaaatgt gttgcgttac catatgtgaa gcatgtggta
     3601 gtgtttattt gagatcgggc cttctgtggc ccaggttagc ctcaatctca tatcgttagc
     3661 ttcccaagtg ccggtgtatc agataccaag gaaatttgaa acagattgtc aacaacgcat
     3721 ttgccaatcc atccttttta ctgagaaaaa aggtcacaga ccaccagagt acattggtgc
     3781 atgtaatccc aacccaggga aggcacagga aaattagaac tgttcaagcc caaactgggc
     3841 cacgtgagac cctgctgtat gccagaatac tcaagaaggt gtataaaaag cagccagatt
     3901 tcaaaagcag gcggcaagca aaggcagaac atggactctg ccggtgggaa attgtgcggt
     3961 agaacggccg acatgaattg taccagtaac tccagtaact atttgggtgg gctattgcca
     4021 tagttgaaaa cgagtctttc cttatttaaa tggagtacta ggttggcgtg ggacatacct
     4081 ggaatcgtgt ccctggcgag gcgaagataa gagtgctatt gcttcagatt agcccggggt
     4141 ccatagagca gccccatctc aaaaatggag aaagacagac agacaatgct atggaaagat
     4201 tgaaactgag ggatggggcg aagaacccat gctgttgaga gattaaccaa aagaatcgcc
     4261 tgaaaccagg aaagggaata acaattaaaa tgtaaataag aaatacccaa tttaataaag
     4321 atggagggaa agaaaaaaag aatcatctga attcaagaag aaataacaaa aaatggctta
     4381 ccaaaaaatt agggaaaaaa accatgatgt ccactgactc attaaaagga tcgggatatt
     4441 ttcatttgta tattaccaat agcacaaatg aaaagcaaaa gttaatcaaa actaccaaga
     4501 gaaaagccgg cttggatttt aacatgcctg tcatgcaaaa tcaggacaga acatgtggac
     4561 gaaaacgatt gaaaggtcca acacgcacat ggcctctccc aaatttacaa aatagtcttt
     4621 tatataagaa attattttct gtgtcttgaa cttcaagtct gaataagtgt cagtcagttc
     4681 aaattttata taatgctttc ttacttgggc ccagagatgt cattccagat atttggaaat
     4741 ataattttaa ataacctcaa aacaaccatt agttaaacaa aacttaatgg agctgaggtg
     4801 gggagtgata atttatggaa tgcagttgtg tgtagccggc agggtttcca ggaaacaagc
     4861 gggtgaggag aagcaaacgt aacacgttag gaagttagtg ggaagcaaaa agtgatacaa
     4921 gtttttaaaa tgatcaacac attctgggat aatctttagc tatgaaggaa ttactgacgt
     4981 cggtagtgat gtctctcaca tctttagttc tagcctttag gagacagaat ttagatgctc
     5041 tctgagttct aggccagcct ggtctacata gcaagacact gttctggggg aagaaaaaga
     5101 aaagtggggg ccgtggggat cctagggcct agttcctaag gcctgcattc cagcgctagg
     5161 ggtgtaggcc ttgggcagcc ttgtctacct agcgagactc cttctcaaca cggaaacaat
     5221 ctacacatta gtgaagaatg agtcccttcg tgcttctgag tgtagaaagt ggactacgtt
     5281 agaaaataaa gactaacagc ttcattcaca gtccttgtct ttgtagtggg gttttggcct
     5341 taaccacagt tggttgaatc agtccctttc tgaggtgtat agaggcccct ttctcccctg
     5401 gagtagagag tgaggtgatg acctttgtac atattagctc ccatatgcag ataaatatta
     5461 gaggtccctc cctgggttgg attcgctact ttccagtata tgaacactta caaaaggcca
     5521 atgttgctag catttggttc tttctcctgt gtcatatagc gcccctatcc aatacctttg
     5581 ctgacacctt tttgttcctt aaagctttga tctcactact tcgtttaagt gaaaagtatt
     5641 atgacagttt tagtttgcat ttttcctgct gtatgtaact tgcatctaat gccatatttt
     5701 cctattctca aatattacat cttctgtgga acgtctcaat accattttct gttgaatgac
     5761 tgttttcctg atggctgtgt aagacttaca atcctctaga ctatggtttt atcagttttc
     5821 tttctttatg cctggtttga atttgtaaac tttgcaattc acagttggaa ggcatctgtc
     5881 ttggtgttaa tgcctgtaaa tcatttcttt ccattccaat atattttcca aaacccca
//
