LOCUS       XM_006240613            6259 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zinc finger protein 839 (Zfp839),
            transcript variant X1, mRNA.
ACCESSION   XM_006240613
VERSION     XM_006240613.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_006240613.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6259
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6259
                     /gene="Zfp839"
                     /note="zinc finger protein 839; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 13
                     ESTs, 1 long SRA read, 7 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 117 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:500723"
                     /db_xref="RGD:1562557"
     CDS             51..2819
                     /gene="Zfp839"
                     /codon_start=1
                     /product="zinc finger protein 839 isoform X1"
                     /protein_id="XP_006240675.1"
                     /db_xref="GeneID:500723"
                     /db_xref="RGD:1562557"
                     /translation="MAGAEPEPGEVGGSGSTLPGRSHGTVRLAPLDPEQLQRVLKQVT
                     RAQPPPSVLSDAGRRLPDGARQTAQQRGPGAEAPRLLTPQELEAICVKVSGDTKIKER
                     AMPPLATIQPKTVRQSQLPGGSSSMGVSASSPQLLRVQALGRTESQPRTCRGSLQPPA
                     PQALVQRVSKRVKAHRTAHGRGITLSPVAASGPHTLAAVSSGSARLLISSLHTAHTEK
                     SKKSLRVRTRSGRVSRPPRYKARDYKFIKTEDLAEGHLSDSDDYSELSVEEEEELREK
                     PAFLDLEVCALRPKAFKCQVCEKSYIGKGGLARHCKLNPDHCQLQPEALLCGKANGSP
                     TLGCSDSKTRGLACLKPSIPATHCMEEAGSAWPTLQNGEPVEVEETLVPEPQNRSPSA
                     LLRPEKYLKPKSGNWESQAEFSTASLQESRAVQPNSHPAGPSGLSVSRGAELREALRQ
                     CGREELLGLVLPQLAQAVTLYELLLVKVEKSPRTKPFFPAVYKEFEQLYDVVKRMCQD
                     YLSSSGACSQEPLEINNDEVARSLGITEFLRKKETPKCSSQETEGKLEEGSGRKRERE
                     LGALATGEGLATVKKPRTVALPTDVPEYLPSTSGCQQKSKSSRAPAISKGSEPAATEC
                     SLCSEGSCREMVPDSDGNGPPVGQRHPVMAPDDFEARNSSADPTLVCQDVSGSVLHSL
                     VAEPRGMPAARESVFSEETAPEHTIDEDSVALRKSNSVCDTPSLGGRVELRESGTAEA
                     GDLRETDQTHLSGQQAIPSHALLAEAAAVPLHSILPANTLPAACVSKIVPEPEPVLHP
                     GPGGSLCTSGDPRVGSDAGDISQLLSRMETHGQRETETAAAIGEPLAFDISDVCQEVL
                     SQGQEQIFIRTSNGFILSYPSTIVSQEEDSVIVTNATGSILRFGPPEGVTLEAMEAFL
                     TVEAECSQ"
ORIGIN      
        1 tccgccccgc cgcttcaagc gacgcgggtt cgagcccccc ttaggccgca atggcgggcg
       61 cggagccgga gcccggggaa gtcggcggta gtggctcgac tcttccgggc cggagccacg
      121 gtaccgtgcg cttggctccg ctggaccccg agcagctgca gcgggttctg aagcaggtga
      181 ctcgggcaca gccaccgccc agcgtgctgt cggacgcggg gcggcggctc ccggacgggg
      241 cccggcagac cgcccagcag cggggaccgg gcgccgaggc cccgcgcctg ctgacacccc
      301 aggaacttga agccatttgt gtcaaggtat ctggtgatac aaaaattaag gaacgagcaa
      361 tgccccctct ggccaccatc caacccaaaa ctgtaagaca aagtcagctt cctgggggaa
      421 gctccagcat gggtgtgtct gcctccagcc ctcagctgct cagggtgcag gccctgggga
      481 ggactgagtc acagccgcgc acctgtagag gctctcttca gcctcctgct cctcaggcgt
      541 tggtacagag agtttcgaag agagtcaagg cccacaggac tgcccacggg cgtggtatca
      601 ctctgagccc tgtggcagcc tcaggtccac acaccctagc agctgtgtca tctggctcag
      661 cgaggctctt gatctccagc ttgcatacag cgcatactga gaagtcgaag aaatctttaa
      721 gggtgagaac tcgatctgga cgggtatccc ggcctcccag gtataaagcc agagattaca
      781 aattcatcaa gactgaagac ttagcagaag ggcatctgtc ggattctgat gactattcag
      841 agctcagtgt ggaggaggag gaggagctga gggagaagcc agctttcctt gaccttgaag
      901 tctgcgccct gaggcccaag gcctttaagt gtcaggtgtg tgagaagtca tacattggaa
      961 aaggggggct ggcgaggcat tgtaagctca acccagacca ctgccagctg cagcctgagg
     1021 ccttgctctg tgggaaagct aatgggagcc cgaccctggg ctgctcggac tcaaagacca
     1081 gaggcctggc ttgcctgaaa ccgtccatac cagctactca ctgcatggaa gaggcagggt
     1141 cagcttggcc taccctacag aatggtgagc ctgtcgaagt tgaagaaaca ctggtacctg
     1201 aaccacaaaa tagaagtccc tcagctcttc tgagaccaga gaagtaccta aaacctaaaa
     1261 gtggaaattg ggaaagccag gcagaattca gcacagccag cctccaggag agcagagcag
     1321 tccagccaaa cagccaccct gctggtcctt cagggctgag tgtgtccagg ggagccgagc
     1381 tccgggaggc gctcaggcag tgtggccggg aggagttgct gggattggtg ctacctcagc
     1441 tggctcaggc ggtgaccctg tatgaactcc ttctggtgaa ggttgagaaa agtcccagga
     1501 cgaagccttt ctttcctgct gtgtacaagg agtttgaaca gctgtatgac gtggtgaaga
     1561 ggatgtgtca ggattacctc agcagctctg gtgcatgctc tcaggagcct ctggagataa
     1621 acaacgatga ggttgccagg tccttgggaa tcacagaatt cctgaggaag aaagagacac
     1681 ctaagtgctc cagccaggag acggagggga agctggagga aggcagtgga cggaagaggg
     1741 agagggagct gggcgcactg gccacagggg aggggctggc cacggtgaaa aagccccgaa
     1801 cagtggcttt gcccacagat gtccctgagt atcttccctc caccagtgga tgccagcaga
     1861 agtctaagtc ctcacgtgct ccagccatca gcaagggttc tgagcctgca gccactgagt
     1921 gctctctctg ctcggaagga agctgtcggg agatggtgcc tgacagtgat gggaatggac
     1981 cacctgtggg ccagcggcat ccagtgatgg cacccgatga ctttgaggcc aggaacagct
     2041 ctgcagaccc tactcttgtg tgtcaggatg tcagtgggtc agttcttcat tccctggtag
     2101 ccgagcccag agggatgcct gcagcccggg agtctgtgtt ttctgaagag actgctccag
     2161 aacacactat agatgaggat tctgtggctc tccggaagag caacagtgtc tgtgatacgc
     2221 catcattagg tggaagagtt gaacttagag aatcgggaac tgcagaggca ggagacctcc
     2281 gggagacaga ccaaacccac ctcagtggcc agcaggccat tcccagccat gcccttcttg
     2341 cagaggctgc agccgttcca ctgcatagca ttttgcctgc gaacaccttg ccagctgcct
     2401 gtgtttccaa gattgtgcca gagccagagc cagtgcttca tcctggacca ggtggatcac
     2461 tgtgcacgag tggggatccc agggtcggaa gtgacgctgg agacataagc cagctcctct
     2521 ctaggatgga gacacatggc cagagagaga cagagactgc ggctgccata ggggaacccc
     2581 tggcttttga tatttctgat gtgtgccagg aagtattgtc tcagggacag gagcagattt
     2641 ttattcggac ttccaatggg tttattttgt cctatccaag taccatagta tctcaggaag
     2701 aagacagtgt catagtgact aatgcaacgg gttctatcct gaggtttggc ccaccagaag
     2761 gcgttactct tgaagccatg gaagcctttc tcactgtaga ggcagagtgc tctcagtgag
     2821 caggagccag gggttgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgaaag agagagagag
     2881 agagagagag agagagtcag agagagggaa tatgataggt gtgtatgtga acatgtgtgt
     2941 gttagagaga gagaagagag aatgtgtgtt tgtgtgtgtg tgttcagggc attatttttt
     3001 aaggcctggt cccatgtagt ccagactggc cttgaactcc caatcttcct gccttgatct
     3061 actgaatggt agtgtgacag ggatgtccca ccatgccagg cagatctttg aacctatatt
     3121 tatatggatt ttatcagaga aggtcaattt taggctatgt atttttctaa tgtgaatact
     3181 gacacaaaca gaccatttat aaagagtaat gtctgtccca gcgctgtttc tcaggacctc
     3241 ttcacaatag cgaacagtac aggcaggttt gtgggtttgg aagcagggtt tgcacagccc
     3301 tggctggtcc tgaattggtg attctcctgc agctagactt gcagatgtgg ctgtggcaga
     3361 tgcagaccct cttacacagc gagaggttgg tggctgtagc agttacgctt catttcatcg
     3421 tcacccacca gccttgcggc cgttccacat cattccgcct ccgctcttga tgatgtgctg
     3481 tttcttccac agatgacgtc tgtacttcag gaagctagcc gatttggcag tgttctactg
     3541 aaaagtcaaa atgaaagtca tttgtatttg ctttcttgat gtgtgtgggg attgaaaaca
     3601 gccttgaacg tgtgggcagc cttagtcact gagctccatc tttaagacag tctcgtgaag
     3661 tggcccaagc agtcctccaa tctgtgctcc tcctgttagc ctccggtagc tacagtgaca
     3721 ggctgtgtga tcaggtgggg ttttgtttgc tgtttggttt ttttgttttg tttttgagac
     3781 agggcctcac tatgtagctc tgactagaaa tcactacgta gactaagctg gcctccaact
     3841 tagagatcta tctacctcct gagtgctgag actaaaggta tgtgccatca tgcccagctt
     3901 tcttccttcc tttatctaat tccgggatgg ctctcaggtt gccagacatg cacagtgagt
     3961 gcctataccc aaggagcctt ctcaccaggt atccacttgg gtttatgttc attctcccca
     4021 caccccaaga ctgggtcttg ctatagctga ggttggcttt gaacttagaa tcctcctgcc
     4081 tctgcttctc cagtgctgac ataaaaggct ctacagaaac ctagggctca cggggaagcc
     4141 catcactttt gatgtttcag ctgtaacata ctgtctcagg atttctttgt gagggtttcc
     4201 atggcaatat tgtgggacta aggagaatgc tgtttgtcct tattagatga gagcactgga
     4261 cttcagcagt tcttggctta ctcctgcagt ctttggaaga cctgagcgcc tgagacgcag
     4321 ctgcacggca tcctggtgct gtgctgagtc aagatgaatt gctccccacc gcccttgccc
     4381 ttcctgtttt ctcactctca aagtaggggt cacagggatg aacaggtggg tctcctagca
     4441 gaacaggggt gcctggaact ggggaccatc agaccaaccc aggaagggct gtgtcttgtg
     4501 gaccaggcca ctcctcagaa gcctaccacg tcccattgcc tgaattccta atctgctatt
     4561 ggggcatgtt gacatttatt attttatctt cagtgctttg tggtttgcct gaaatgcttt
     4621 acaaaagaca ccaccgacca cgtctttccc agtcttcact gtggagtcac ctcagacctt
     4681 ctcagtccgg ggcaaggtgg gtccgagctt tttgtctcct tccctgtgaa cttggcaggt
     4741 ttgagactgt agaaggcgtg tgtgatccac cactgtgctc aacctcaagt gccacactga
     4801 cctctgatga catctgagct gttcagatag gaaatacgct gcaggatcaa tatctgttta
     4861 tcttagtttc tgcctgtcct cggctgtatt gatctttcca ttagcactct tgtgtgctaa
     4921 tgggtggctg gggagcagat caccgagaag ccacagaagt tgggtctgaa atctcagcat
     4981 tggaggtgag gtgggagcgt agtgattctg aagtcagcat gagttagtta cccagcaggc
     5041 ccatctcaga aaacgtaagg aaatctttaa gcatgtagac tggtctggaa aaggagagtt
     5101 tgattaccct catgctggac agctcacaac tgcctgcctc tagttctacc tccaaaggat
     5161 ccagcgccct ccttcggtct ctgggcagct atagccaggt gcacgtaagc tcacacaggc
     5221 acatgtacaa cttaaaaaca ttagaaagct aactccagga aacagaagac agctatacac
     5281 aagctaaaag taggcatcat gagccacaga ttgcttggtc aaagactgta gcatgtccag
     5341 atcaacctgg ctgtggagtg aggtcatgtc tcaagcaaac gtgtctaact ctggaccttt
     5401 gtcctctggg aaaagggagc agcagagggc acagcgctca ctgtgtaaac ctgatgaact
     5461 gagtccagat ccctagaagc agcatagcac agcacaagtg taggtaaccc ccatggcatc
     5521 tacaaggaga tagaggctga gacaggagaa acacaagctt gcaagccagg tatcccggtg
     5581 tttacagcag tgaacaagag gctctgtatc aaggcagaag gcaaggcccc acacccactg
     5641 cagatgcaat gtagctcgtg tgcccataca cacagacacg agagaaggag cagggtagtc
     5701 ttgggtattc cccaaaagat gggcgcagtg gcccaagagt gcccaccccc agatgggaac
     5761 agtggtctta gtgcgccccc atcaggaagg agtgaaggaa gtacaagtgg tcgttcctga
     5821 gggccagttg acctcactat acaggcagct ctccctgagg aatgttagtt ctctatggac
     5881 ttaggcagta tgctaatggc tgagagaaag ccaaacagac acagcacatc caggccccag
     5941 atggaaacaa gctgcagtta ttggtcgtct cactggcttg ttcatctttt catgcaagca
     6001 gtagcaagtt ttggtaagtg gttttcattt ttgtgacact atactcaatt aattctattg
     6061 gattaaaaac agtgtatttc aatatatttt attaatatat tttatatatt aaatatatat
     6121 atttccagct ataggagaaa tgactgagca cttaagagca tgaactgttt ttccagagga
     6181 ctgactggag tttggtttct gacacccaaa tcaggtggcc gacaacctct tgtaactcta
     6241 gctccaagga ccccacccc
//
