LOCUS       XM_017589958            4299 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zinc finger protein 78 (Zfp78), mRNA.
ACCESSION   XM_017589958
VERSION     XM_017589958.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 3, 2024 this sequence was replaced by
            NM_001427789.1.
            
            On Jan 21, 2021 this sequence version replaced XM_017589958.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4299
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4299
                     /gene="Zfp78"
                     /note="zinc finger protein 78; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1 EST,
                     1 long SRA read, 74 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     110 samples with support for all annotated introns"
                     /db_xref="GeneID:103690110"
                     /db_xref="RGD:1586242"
     CDS             208..2124
                     /gene="Zfp78"
                     /codon_start=1
                     /product="zinc finger protein 471"
                     /protein_id="XP_017445447.1"
                     /db_xref="GeneID:103690110"
                     /db_xref="RGD:1586242"
                     /translation="MTVELMKAMLQDAVTFKDVAIDFSQEEWEWLNPAQRSLYRNVVL
                     ENYRNLVSVGACISKPSLISLLEHGKEPWEVKGQVTRSPVQGGESVQKTQELSLRQLA
                     FDAVSVENIASLGCESPTSGKKQKCKDLFDRQKMSQEIFNLKETVTHKGTHTKEIGYK
                     HTESFKSVHLDSVEENIYSHKTNKKSFSKNPKVRKYKKIWAGKNIFKCNECEKTFTHS
                     SSVTVHQRIHTGEKPYKCTVCGKAFKQSHHLAQHHTTHTHEKLFECKECNKAFSQNSY
                     LIVHQRIHTGEKPYKCKECTKSFRQPAHLAQHQRIHTGEKPYKCKECGKAFRDSSTFA
                     QHKRCHNDKRPFQCAECGQAFRYNMSLTRHSRHYHTGEKPFDCADCGKVFSVHIGLTL
                     HRRIHTGEKPYPCNVCGKAFRSGSSLTVHHRIHTGEKPYKCDICGKAFSHSMSLTGHQ
                     RVHSGEKPYTCKECGKAFRQSIHLVVHSRIHTGEKPYECKECGKAFRESSQLASHQRN
                     HTGEKPFECKQCGKFFKRSTYLARHQKIHTGEKPYECNECGKTFTHTAYLIRHKRVHT
                     GEKPYKCSECGKAFGDGSSRAQHQRLHSGERPYACERCGRAFRTKSSFNCHQSCHTGK
                     KPQNCVPGGKPFSR"
ORIGIN      
        1 acttcgccga gtacacgccc cttaagcccc gcctttctca gattaggttt ttctgttgtc
       61 gctggcacag gctgcgcttg cgcacattta gcttgtatga cacctcccag cgtccctcgg
      121 ttgacagcgt ctggataagg tagctggcgg gctggacttc ccaggacaca gttgttctcc
      181 aagagagaaa ccagggggag acagaacatg accgttgaac taatgaaagc catgctacag
      241 gacgcagtga cattcaaaga tgttgccata gacttttctc aggaggaatg ggagtggctg
      301 aatcctgctc agaggagttt gtacaggaac gtggtgctgg agaactatcg gaacttggtt
      361 tcagtgggag cttgcatttc caaaccatct ctaatctctt tattggagca tgggaaggag
      421 ccttgggagg tgaagggtca ggtgacaaga agcccggtac aaggtggaga atctgtacag
      481 aagacacaag aattatctct gaggcaattg gcttttgatg ccgtgtcagt ggagaacatt
      541 gcaagcctcg gttgtgagtc tcccacttct ggaaaaaagc agaaatgcaa agaccttttt
      601 gatagacaga agatgagtca ggaaatattt aacctgaaag aaacagtcac tcacaaagga
      661 actcacacta aagaaatagg ctacaaacac acggaatctt tcaaatctgt ccatctggat
      721 agtgtagaag agaatattta tagtcacaag acaaataaga aaagcttctc caaaaatccc
      781 aaggtacgga aatacaagaa aatctgggca gggaagaaca tttttaaatg taacgaatgc
      841 gagaaaacct tcacccacag ctcatctgtg actgtgcatc agagaattca cacgggcgaa
      901 aagccgtata aatgcacagt ctgtggaaag gccttcaagc agagccacca cctggctcag
      961 caccacacaa cacacaccca cgagaaactc tttgagtgta aggaatgtaa caaagccttc
     1021 agccagaatt cataccttat tgtgcaccaa agaatccaca ccggagaaaa accgtacaag
     1081 tgtaaggagt gtacgaagtc cttcaggcag cccgcccacc tggctcagca tcagaggatt
     1141 cacactgggg agaagcccta taagtgtaaa gagtgtggga aggccttcag ggacagttct
     1201 acctttgctc agcataagag gtgtcataat gataagcgac cctttcagtg tgctgagtgt
     1261 ggtcaagcct tcaggtacaa catgtcccta acccgtcact ctaggcatta tcataccggc
     1321 gagaagccat tcgattgcgc tgactgtggg aaagtcttca gtgttcacat aggactaact
     1381 ttgcacagga gaattcacac cggagagaaa ccatacccat gtaacgtctg tgggaaagct
     1441 ttccgcagtg ggtcgtccct gactgtacac cacaggattc acacaggtga gaaaccttac
     1501 aaatgtgaca tttgtgggaa ggcctttagc cacagcatgt cgctcactgg ccatcaaaga
     1561 gtacactctg gagagaaacc ttatacatgc aaggagtgtg ggaaagcttt tcggcagagt
     1621 atacatcttg tcgttcactc aagaattcat actggagaaa agccctacga atgtaaggaa
     1681 tgtgggaagg cctttcgaga gagttcccaa ctggccagtc atcagagaaa ccacacagga
     1741 gaaaaacctt tcgaatgtaa gcagtgtggt aaatttttca aaagaagtac ctatcttgcc
     1801 agacatcaga aaatccatac aggagagaaa ccttatgagt gtaacgaatg tggcaaaacc
     1861 ttcacgcata ctgcctacct catacgacat aagagggttc acactggaga gaagccgtac
     1921 aaatgttctg agtgtgggaa ggcatttggt gacggctcct cccgcgctca gcatcagaga
     1981 cttcactctg gtgagaggcc ctacgcgtgt gagagatgtg gaagggcgtt cagaacaaag
     2041 tcatccttta attgccacca gagctgtcac accggaaaga aaccgcaaaa ctgtgtcccc
     2101 ggtggcaaac cctttagccg ctgacaaacc tggagcattc accagagaat ttagcttcca
     2161 accagattgt tcacgtggaa gatttcacag aagccagaga gctcttggga atgcgaggga
     2221 tggggagacg tcttcacaaa tgttcttaaa ccatccatca ttggtgagta cttgacactg
     2281 tcatctcggg catccctctg tcaccaagtc ctgtgcgtat acttgctaag tattcccatt
     2341 tatttttgtt cctgttagcc tgctccgaag cacgattgtc tcgcttggac ttttccaaat
     2401 gtctgtagct tgtcctgttt ccttcaagtt tattattcat tcgtcttaca gtcagaaaaa
     2461 cgctttataa aaatataaat gttatttatg taactcttct aatactcctt gtgacacgtt
     2521 taatgcattt ggaatgctcg gcgatgagac tgactgtatt aagtttggat ggaaaacatc
     2581 cctccaatga acaggagaca gatcggccca aagcacagag gccgcgcaca ggggcaaagg
     2641 gacatggggg cggggtatcc ctgagccgat gcttcatggg ggccagggtt acagatttcc
     2701 tctgctcagt ggcaacaagc aggcatgagt gctgggaggt catctcacgt gtggaatgtg
     2761 atcgttgtga catacgtgcc ccctccacct tcagcagtct gtttgacagg aagccctgag
     2821 accagggatc ccagtttggc agaagtgctt ctaagttctt attcttggca ccagcttgag
     2881 ccatctgtgg acagcatgat agtcggaagt gtcaagggtg actgaccttc acttccagcc
     2941 tgggaaatag atatcaagag aacataaaat gataggactt cagcacactg acccgtacaa
     3001 agtgcctaga aaatgtgtgg ggccagaaat attatttcta aaccagggcc tctgggactt
     3061 gggatacagc ttaggtgatg cgagtaattt agaaactgaa agtgtcttca ggtggatgac
     3121 aattagcatg tgcagtgttt aagatggaaa ctttctaatg attctaaggc tccttcttgg
     3181 taaagaaatt aaatatggtc tgatatggag aatctgtttg gaagtgccta gaagttagag
     3241 attggaataa attttaggat ttatttggaa acacacacac acacacacac acacacacac
     3301 acacacacac acacacacac tccccaaacc agtttagctg aaatagctcc tatctgaaag
     3361 tataagagat cctatctgaa aatataaggt ggagggtgat aaccaataac gacttctgct
     3421 ctctgcacat gcccacatgg gtgatcaaac ccacaaacgc acaaatacaa atacataaaa
     3481 ataaaattta aaagggtgat tgtggctggg attggtggca ctctggaggt agagtcaggt
     3541 ggatctctga attagagacc agcctggttt acagagttct agggcagtca gggctacata
     3601 gtgagacctt gaataaaaac aaaatgaaaa gatcacatgc aagatgagta cacactgcag
     3661 aaataggaaa atacagggac tcacacttct attctagctg ttctagagga ctacgggtga
     3721 tttttgtaat gtccatctca tggtaggttc tgttggactt tataaggacc acaatgtgag
     3781 gaactgtatt aaagagctgc agattgggga aggttgaaca ccacagttct aagactctag
     3841 agttgagtgt gatttttgtt tagcttgtta actgtggtaa attaggtaaa ttgagttttg
     3901 aatgttgaac cagccttcca tccctgaatg aaccccaggt agtcttttag tggccaagtt
     3961 gagcatcctt aacgtgactg tttagaatct aaaatgctcc aaagtctgaa actttctgaa
     4021 tgcttacagg acatcacaag tggcaaattc tactcccaat cccatgtaac aggttgcaat
     4081 aaaaataaga aaaataagaa aataaaattt tgttttaaaa ttgccagggc tggggatggt
     4141 tcagtggcta ggagcacttg tttttagaga ggacttggat ttgggtccca gcatctagca
     4201 gctcacagct atctgcaacc cgacttccag gggatgctgc tttctggcct ccacaaggac
     4261 tgtgggcaca caatgcacat aaatacacaa agacaaaat
//
