LOCUS       NM_001401161            1849 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus zinc finger protein 707-like 1 (Zfp707l1),
            transcript variant 1, mRNA.
ACCESSION   NM_001401161 XM_006241815
VERSION     NM_001401161.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1849)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1849)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Feb 3, 2022 this sequence version replaced XM_006241815.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643291.21009.1, EV769957.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-282               JAXUCZ010000007.1  109531227-109531508
            283-412             JAXUCZ010000007.1  109535026-109535155
            413-523             JAXUCZ010000007.1  109535466-109535576
            524-1849            JAXUCZ010000007.1  109536702-109538027
FEATURES             Location/Qualifiers
     source          1..1849
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q34"
     gene            1..1849
                     /gene="Zfp707l1"
                     /gene_synonym="RGD1562665; Zfp707; Zfp979; Znf707"
                     /note="zinc finger protein 707-like 1"
                     /db_xref="GeneID:362936"
                     /db_xref="RGD:1562665"
     exon            1..282
                     /gene="Zfp707l1"
                     /gene_synonym="RGD1562665; Zfp707; Zfp979; Znf707"
                     /inference="alignment:Splign:2.1.0"
     CDS             175..1347
                     /gene="Zfp707l1"
                     /gene_synonym="RGD1562665; Zfp707; Zfp979; Znf707"
                     /note="isoform 1 is encoded by transcript variant 1; zinc
                     finger protein 979; zinc finger protein 707"
                     /codon_start=1
                     /product="zinc finger protein 707 isoform 1"
                     /protein_id="NP_001388090.1"
                     /db_xref="GeneID:362936"
                     /db_xref="RGD:1562665"
                     /translation="MRRCLAAAAAPGEAPLELFSGISSALPERANGDASPQVPVTFRE
                     VAVYFCREEWECLSFSQRTLYRDVMLENFRNLNELGCCGRKPSLISRLEQWDEPWVDK
                     WDSSELERQKSVCPGGRKASAPEKTHSRTGAKSKATLRKNVLTSGKAHFTRATSGRKL
                     DNKSEALQNQTCGKSRRRQPGLKEQGKSAAEGHPFICGICGKALSCHSRLAAHQTVHT
                     GTRSFECFECGQTFRWVSDLLRHQRTHTSEKPFCCEVCGQAFSRKDCLAQHHKIHTEH
                     RPYVCSDCGKAFSQKSNLLRHKLVHTGERPFYCDNCGKTFRTKENLNHHQRIHSGEKP
                     YTCGECGKAFRWPKSIRIHQRLHLTKKFYECELCGRGFNHLGYLTRHQRTHGRGEV"
     exon            283..412
                     /gene="Zfp707l1"
                     /gene_synonym="RGD1562665; Zfp707; Zfp979; Znf707"
                     /inference="alignment:Splign:2.1.0"
     exon            413..523
                     /gene="Zfp707l1"
                     /gene_synonym="RGD1562665; Zfp707; Zfp979; Znf707"
                     /inference="alignment:Splign:2.1.0"
     exon            524..1849
                     /gene="Zfp707l1"
                     /gene_synonym="RGD1562665; Zfp707; Zfp979; Znf707"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgtctttccg ctggagagtt gatgtcagag cggtgtgaag ccgagttgac tggtgaagct
       61 gcaggaactg gggaatcgtt tgaaggagcc gaacggcctg gctgctttgg gctgctctgc
      121 ttcgccccac tgcgcttgcg ctaaatccga cccggcattc cccgcggcct tccgatgcgt
      181 cggtgtcttg ctgctgctgc agctccgggt gaagctccac tagagctctt ctccggaatc
      241 agcagcgctc ttccggagcg ggctaacggc gatgcctctc cgcaggtgcc ggtgaccttc
      301 agagaggtgg ctgtgtactt ctgcagggaa gaatgggagt gtctcagttt tagccagagg
      361 accctctacc gggatgtgat gctggagaac ttcaggaact tgaatgaact gggatgctgt
      421 ggccggaaac caagccttat ttctcgcctg gaacaatggg atgagccatg ggttgacaaa
      481 tgggacagtt ctgagctgga aagacaaaaa agtgtctgcc caggaggcag aaaggcttca
      541 gctcctgaga agacccattc acggacagga gccaagagca aggctacctt acggaagaat
      601 gtcctaacat ctggtaaagc gcactttacc agagctacct ctgggaggaa actggacaat
      661 aaatccgaag ccctccagaa ccagacatgt gggaaatccc gcaggagaca gccaggcctc
      721 aaggaacagg gcaagagtgc agcagaggga cacccattca tctgcggcat atgtgggaag
      781 gcactgagct gccatagccg gttggcggct caccagacag tacataccgg aaccaggtcc
      841 tttgaatgct ttgagtgtgg ccagacattc cgctgggtct cagaccttct gcgccaccag
      901 agaactcaca ccagtgaaaa acccttctgc tgtgaggtat gtggacaggc ctttagccgg
      961 aaggactgcc tagcacagca tcacaagatc cacacggaac accggcccta tgtgtgcagt
     1021 gactgtggga aagccttcag tcagaagtca aacctcctgc ggcacaagct tgttcacaca
     1081 ggagagaggc ctttctactg tgacaactgc ggcaagacct ttcgaactaa agagaacctc
     1141 aaccaccatc agcggattca cagcggagag aagccctaca catgtggtga gtgtggaaag
     1201 gccttcaggt ggcccaagag catccgcatc caccagcggc tgcacttgac caagaagttc
     1261 tatgagtgcg aactgtgtgg gaggggcttc aaccacctgg gctatttaac aaggcaccag
     1321 agaacacatg ggcgaggaga agtgtagggc ctcctgtggt agcccggcct cctgtgctca
     1381 gttgcgggga agaactgcag caggtgctgt caaggaaggc cagatgactg gtttacgaac
     1441 cagcagtttt cactcctcgc aacccttgtg gctttctgac aagggaaggg atcagttaca
     1501 ttgtcagagc cagcaacggc cgttcccttg gtgctccttg cctctctctg gctatgtttc
     1561 caaggaattc gcagggcctg agtcttttgt atgcacttta acttccctcc cagcactttc
     1621 atgtctcctg tcttgtggga cggaggcttt tgcagatgca aagcctacgg ttggagatga
     1681 caagatggcc caaagggtaa aaagtctgtg aaacttgaat tgagtttgat tcccagggat
     1741 ccatatggtg ggaggagaga accaaatgct ataagctgtt ctctctgact tccctcatgt
     1801 gtgtgcatac agacacaata aatacttatt tggtttcatt aaagtataa
//
